RNA–Protein interactions for RNA: ENST00000493379.1

VPS52-219, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 786 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-219ENST00000493379 PRDM10Q9NQV6 1147 aa9.24□□□□□ -0.93
VPS52-219ENST00000493379 AXIN2Q9Y2T1 843 aa9.24□□□□□ -0.93
VPS52-219ENST00000493379 NFAT5O94916 1531 aa9.24□□□□□ -0.93
VPS52-219ENST00000493379 NSD3Q9BZ95 1437 aa9.23□□□□□ -0.93
VPS52-219ENST00000493379 ABCC6O95255 1503 aa9.23□□□□□ -0.93
VPS52-219ENST00000493379 C16orf71Q8IYS4 520 aaPredicted RBP9.23□□□□□ -0.93
VPS52-219ENST00000493379 TCP11L2Q8N4U5 519 aa9.23□□□□□ -0.93
VPS52-219ENST00000493379 LRRC37A3O60309 1634 aa9.23□□□□□ -0.93
VPS52-219ENST00000493379 NSD2O96028 1365 aa9.23□□□□□ -0.93
VPS52-219ENST00000493379 KIF24Q5T7B8 1368 aa9.23□□□□□ -0.93
VPS52-219ENST00000493379 GPR37O15354 613 aa9.22□□□□□ -0.93
VPS52-219ENST00000493379 IP6K1Q92551 441 aa9.22□□□□□ -0.93
VPS52-219ENST00000493379 GGNBP2Q9H3C7 697 aa9.22□□□□□ -0.93
VPS52-219ENST00000493379 COLQQ9Y215 455 aaPredicted RBP9.22□□□□□ -0.93
VPS52-219ENST00000493379 LMO7Q8WWI1 1683 aa9.21□□□□□ -0.93
VPS52-219ENST00000493379 SEC24BO95487 1268 aa9.21□□□□□ -0.94
VPS52-219ENST00000493379 LBX1P52954 281 aa9.21□□□□□ -0.94
VPS52-219ENST00000493379 EVA1CP58658 441 aa9.21□□□□□ -0.94
VPS52-219ENST00000493379 OXER1Q8TDS5 423 aa9.21□□□□□ -0.94
VPS52-219ENST00000493379 THRAP3Q9Y2W1 955 aaKnown RBP9.21□□□□□ -0.94
VPS52-219ENST00000493379 KNSTRNQ9Y448 316 aa9.21□□□□□ -0.94
VPS52-219ENST00000493379 PNPLA7Q6ZV29 1317 aa9.21□□□□□ -0.94
VPS52-219ENST00000493379 COL18A1P39060 1754 aa9.21□□□□□ -0.94
VPS52-219ENST00000493379 GRXCR2A6NFK2 248 aa9.2□□□□□ -0.94
VPS52-219ENST00000493379 DCBLD2Q96PD2 775 aa9.2□□□□□ -0.94
VPS52-219ENST00000493379 MAP3K19Q56UN5 1328 aa9.2□□□□□ -0.94
VPS52-219ENST00000493379 HOXC9P31274 260 aa9.19□□□□□ -0.94
VPS52-219ENST00000493379 MSL1Q68DK7 614 aa9.19□□□□□ -0.94
VPS52-219ENST00000493379 MARCH10Q8NA82 808 aaPredicted RBP9.19□□□□□ -0.94
VPS52-219ENST00000493379 SLC16A10Q8TF71 515 aa9.19□□□□□ -0.94
VPS52-219ENST00000493379 LRRC4BQ9NT99 713 aa9.19□□□□□ -0.94
VPS52-219ENST00000493379 POLKQ9UBT6 870 aa9.19□□□□□ -0.94
VPS52-219ENST00000493379 WDR17Q8IZU2 1322 aa9.19□□□□□ -0.94
VPS52-219ENST00000493379 RTL1A6NKG5 1358 aa9.19□□□□□ -0.94
VPS52-219ENST00000493379 COL5A2P05997 1499 aaPredicted RBP9.19□□□□□ -0.94
VPS52-219ENST00000493379 QSER1Q2KHR3 1735 aa9.19□□□□□ -0.94
VPS52-219ENST00000493379 TRIM66O15016 1216 aa9.18□□□□□ -0.94
VPS52-219ENST00000493379 INSRP06213 1382 aa9.18□□□□□ -0.94
VPS52-219ENST00000493379 ERBB3P21860 1342 aa9.18□□□□□ -0.94
VPS52-219ENST00000493379 OSBPP22059 807 aa9.18□□□□□ -0.94
VPS52-219ENST00000493379 FBLN1P23142 703 aa9.18□□□□□ -0.94
VPS52-219ENST00000493379 POLR3GLQ9BT43 218 aa9.18□□□□□ -0.94
VPS52-219ENST00000493379 CARD10Q9BWT7 1032 aa9.18□□□□□ -0.94
VPS52-219ENST00000493379 MKRN1Q9UHC7 482 aaKnown RBP9.18□□□□□ -0.94
VPS52-219ENST00000493379 POTEFA5A3E0 1075 aa9.17□□□□□ -0.94
VPS52-219ENST00000493379 CTCFP49711 727 aaPredicted RBP9.17□□□□□ -0.94
VPS52-219ENST00000493379 SLC39A7Q92504 469 aa9.17□□□□□ -0.94
VPS52-219ENST00000493379 KCPQ6ZWJ8 1503 aa9.16□□□□□ -0.94
VPS52-219ENST00000493379 CRB1P82279 1406 aa9.16□□□□□ -0.94
VPS52-219ENST00000493379 SMG6Q86US8 1419 aaKnown RBP9.16□□□□□ -0.94
VPS52-219ENST00000493379 IGSF1Q8N6C5 1336 aa9.16□□□□□ -0.94
VPS52-219ENST00000493379 RRS1Q15050 365 aaKnown RBP9.16□□□□□ -0.94
VPS52-219ENST00000493379 DDB1Q16531 1140 aa9.16□□□□□ -0.94
VPS52-219ENST00000493379 FLT4P35916 1363 aa9.15□□□□□ -0.94
VPS52-219ENST00000493379 DLL1O00548 723 aa9.15□□□□□ -0.94
VPS52-219ENST00000493379 C7P10643 843 aa9.15□□□□□ -0.94
VPS52-219ENST00000493379 AMPHP49418 695 aa9.15□□□□□ -0.94
VPS52-219ENST00000493379 HSP90AB2PQ58FF8 381 aa9.15□□□□□ -0.94
VPS52-219ENST00000493379 MORC1Q86VD1 984 aa9.15□□□□□ -0.94
VPS52-219ENST00000493379 CDCA7Q9BWT1 371 aaPredicted RBP9.15□□□□□ -0.94
VPS52-219ENST00000493379 RRAGCQ9HB90 399 aa9.15□□□□□ -0.94
VPS52-219ENST00000493379 CICQ96RK0 1608 aaPredicted RBP9.15□□□□□ -0.94
VPS52-219ENST00000493379 NCAPD2Q15021 1401 aa9.14□□□□□ -0.95
VPS52-219ENST00000493379 TBC1D12O60347 775 aa9.14□□□□□ -0.95
VPS52-219ENST00000493379 KCNQ4P56696 695 aa9.14□□□□□ -0.95
VPS52-219ENST00000493379 PDE4DQ08499 809 aa9.14□□□□□ -0.95
VPS52-219ENST00000493379 SMC1BQ8NDV3 1235 aa9.14□□□□□ -0.95
VPS52-219ENST00000493379 ANKRD24Q8TF21 1146 aa9.14□□□□□ -0.95
VPS52-219ENST00000493379 EMILIN1Q9Y6C2 1016 aa9.14□□□□□ -0.95
VPS52-219ENST00000493379 ZNF316A6NFI3 1004 aaPredicted RBP9.13□□□□□ -0.95
VPS52-219ENST00000493379 EVI5O60447 810 aa9.13□□□□□ -0.95
VPS52-219ENST00000493379 TOM1L2Q6ZVM7 507 aa9.13□□□□□ -0.95
VPS52-219ENST00000493379 DDX12PQ92771 950 aa9.13□□□□□ -0.95
VPS52-219ENST00000493379 ACSBG1Q96GR2 724 aa9.13□□□□□ -0.95
VPS52-219ENST00000493379 KDM4CQ9H3R0 1056 aa9.13□□□□□ -0.95
VPS52-219ENST00000493379 CD2APQ9Y5K6 639 aa9.13□□□□□ -0.95
VPS52-219ENST00000493379 PLEKHG2Q9H7P9 1386 aa9.12□□□□□ -0.95
VPS52-219ENST00000493379 HSPA8P11142 646 aaKnown RBP9.12□□□□□ -0.95
VPS52-219ENST00000493379 NBPF6Q5VWK0 638 aa9.12□□□□□ -0.95
VPS52-219ENST00000493379 PTCD2Q8WV60 388 aaKnown RBP9.12□□□□□ -0.95
VPS52-219ENST00000493379 AIDAQ96BJ3 306 aa9.12□□□□□ -0.95
VPS52-219ENST00000493379 NBPF4Q96M43 638 aa9.12□□□□□ -0.95
VPS52-219ENST00000493379 DAXXQ9UER7 740 aaPredicted RBP9.12□□□□□ -0.95
VPS52-219ENST00000493379 CUL9Q8IWT3 2517 aa9.12□□□□□ -0.95
VPS52-219ENST00000493379 KAT6BQ8WYB5 2073 aa9.12□□□□□ -0.95
VPS52-219ENST00000493379 BCL9O00512 1426 aa9.12□□□□□ -0.95
VPS52-219ENST00000493379 BTAF1O14981 1849 aa9.12□□□□□ -0.95
VPS52-219ENST00000493379 KIF20BQ96Q89 1820 aa9.12□□□□□ -0.95
VPS52-219ENST00000493379 WNK3Q9BYP7 1800 aa9.12□□□□□ -0.95
VPS52-219ENST00000493379 NHSQ6T4R5 1651 aa9.11□□□□□ -0.95
VPS52-219ENST00000493379 IL13P35225 146 aa9.11□□□□□ -0.95
VPS52-219ENST00000493379 MTHFSP49914 203 aa9.11□□□□□ -0.95
VPS52-219ENST00000493379 MAP2K5Q13163 448 aa9.11□□□□□ -0.95
VPS52-219ENST00000493379 DDX10Q13206 875 aaKnown RBP9.11□□□□□ -0.95
VPS52-219ENST00000493379 PRPF38BQ5VTL8 546 aaKnown RBP9.11□□□□□ -0.95
VPS52-219ENST00000493379 TFCP2L1Q9NZI6 479 aa9.11□□□□□ -0.95
VPS52-219ENST00000493379 METRNQ9UJH8 293 aa9.11□□□□□ -0.95
VPS52-219ENST00000493379 ANKRD26Q9UPS8 1709 aa9.11□□□□□ -0.95
VPS52-219ENST00000493379 GNPATO15228 680 aa9.1□□□□□ -0.95
VPS52-219ENST00000493379 EIF4A2Q14240 407 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms