RNA–Protein interactions for RNA: ENST00000492275.5

TTC3-223, Transcript of tetratricopeptide repeat domain 3, human

TSL 3

Gene TTC3, Length 769 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-223	ENST00000492275	TRAPPC3L	Q5T215	181 aa		33.83	■■■■□ 3.01
TTC3-223	ENST00000492275	STARD3NL	O95772	234 aa		33.82	■■■■□ 3
TTC3-223	ENST00000492275	SNRPA1	P09661	255 aa	Known RBP	33.82	■■■■□ 3
TTC3-223	ENST00000492275	EIF4A1	P60842	406 aa	Known RBP	33.82	■■■■□ 3
TTC3-223	ENST00000492275	ARHGEF1	Q92888	912 aa	Known RBP	33.82	■■■■□ 3
TTC3-223	ENST00000492275	BABAM1	Q9NWV8	329 aa		33.82	■■■■□ 3
TTC3-223	ENST00000492275	USP16	Q9Y5T5	823 aa		33.82	■■■■□ 3
TTC3-223	ENST00000492275	TSPYL4	Q9UJ04	414 aa		33.81	■■■■□ 3
TTC3-223	ENST00000492275	ZBTB1	Q9Y2K1	713 aa		33.81	■■■■□ 3
TTC3-223	ENST00000492275	CCER2	I3L3R5	266 aa		33.8	■■■■□ 3
TTC3-223	ENST00000492275	ADRA2B	P18089	450 aa		33.8	■■■■□ 3
TTC3-223	ENST00000492275	CHL1	O00533	1208 aa		33.79	■■■■□ 3
TTC3-223	ENST00000492275	C4A	P0C0L4	1744 aa		33.79	■■■■□ 3
TTC3-223	ENST00000492275	SOS1	Q07889	1333 aa	Predicted RBP	33.78	■■■■□ 3
TTC3-223	ENST00000492275	MSL1	Q68DK7	614 aa		33.77	■■■■□ 3
TTC3-223	ENST00000492275	SRCAP	Q6ZRS2	3230 aa		33.77	■■■■□ 3
TTC3-223	ENST00000492275	A1BG	P04217	495 aa		33.76	■■■□□ 2.99
TTC3-223	ENST00000492275	CANX	P27824	592 aa	Known RBP	33.76	■■■□□ 2.99
TTC3-223	ENST00000492275	LAS1L	Q9Y4W2	734 aa	Known RBP	33.76	■■■□□ 2.99
TTC3-223	ENST00000492275	GIGYF1	O75420	1035 aa	Predicted RBP	33.75	■■■□□ 2.99
TTC3-223	ENST00000492275	RFC4	P35249	363 aa		33.74	■■■□□ 2.99
TTC3-223	ENST00000492275	CCDC27	Q2M243	656 aa		33.74	■■■□□ 2.99
TTC3-223	ENST00000492275	MIER1	Q8N108	512 aa		33.74	■■■□□ 2.99
TTC3-223	ENST00000492275	NCBP3	Q53F19	620 aa	Known RBP	33.73	■■■□□ 2.99
TTC3-223	ENST00000492275	CFAP44	Q96MT7	982 aa		33.73	■■■□□ 2.99
TTC3-223	ENST00000492275	ZNF853	P0CG23	659 aa		33.72	■■■□□ 2.99
TTC3-223	ENST00000492275	LAMB4	A4D0S4	1761 aa		33.72	■■■□□ 2.99
TTC3-223	ENST00000492275	EIF5	P55010	431 aa	Known RBP	33.71	■■■□□ 2.99
TTC3-223	ENST00000492275	WWC1	Q8IX03	1113 aa		33.71	■■■□□ 2.99
TTC3-223	ENST00000492275	PPP1R1B	Q9UD71	204 aa	Predicted RBP	33.7	■■■□□ 2.99
TTC3-223	ENST00000492275	SRP68	Q9UHB9	627 aa	Known RBP	33.7	■■■□□ 2.99
TTC3-223	ENST00000492275	POLD1	P28340	1107 aa		33.69	■■■□□ 2.98
TTC3-223	ENST00000492275	CALD1	Q05682	793 aa	Known RBP	33.69	■■■□□ 2.98
TTC3-223	ENST00000492275	COL15A1	P39059	1388 aa		33.69	■■■□□ 2.98
TTC3-223	ENST00000492275	GYS1	P13807	737 aa		33.68	■■■□□ 2.98
TTC3-223	ENST00000492275	ARX	Q96QS3	562 aa		33.68	■■■□□ 2.98
TTC3-223	ENST00000492275	IFT57	Q9NWB7	429 aa		33.68	■■■□□ 2.98
TTC3-223	ENST00000492275	USP42	Q9H9J4	1324 aa	Known RBP	33.68	■■■□□ 2.98
TTC3-223	ENST00000492275	IL6ST	P40189	918 aa	Predicted RBP	33.67	■■■□□ 2.98
TTC3-223	ENST00000492275	PIP4K2A	P48426	406 aa	Predicted RBP	33.67	■■■□□ 2.98
TTC3-223	ENST00000492275	MBIP	Q9NS73	344 aa		33.67	■■■□□ 2.98
TTC3-223	ENST00000492275	SALL2	Q9Y467	1007 aa	Predicted RBP	33.67	■■■□□ 2.98
TTC3-223	ENST00000492275	NBPF26	B4DH59	902 aa		33.66	■■■□□ 2.98
TTC3-223	ENST00000492275	NBPF10	Q6P3W6	841 aa	Known RBP	33.66	■■■□□ 2.98
TTC3-223	ENST00000492275	NBPF15	Q8N660	670 aa		33.66	■■■□□ 2.98
TTC3-223	ENST00000492275	KRT24	Q2M2I5	525 aa		33.65	■■■□□ 2.98
TTC3-223	ENST00000492275	GNAI1	P63096	354 aa		33.64	■■■□□ 2.98
TTC3-223	ENST00000492275	NLGN1	Q8N2Q7	840 aa		33.63	■■■□□ 2.97
TTC3-223	ENST00000492275	NARF	Q9UHQ1	456 aa		33.63	■■■□□ 2.97
TTC3-223	ENST00000492275	USPL1	Q5W0Q7	1092 aa		33.62	■■■□□ 2.97
TTC3-223	ENST00000492275	ZNF330	Q9Y3S2	320 aa	Predicted RBP	33.62	■■■□□ 2.97
TTC3-223	ENST00000492275		A0A087WZG4	1122 aa		33.61	■■■□□ 2.97
TTC3-223	ENST00000492275	ZPR1	O75312	459 aa		33.61	■■■□□ 2.97
TTC3-223	ENST00000492275	FKBP8	Q14318	412 aa		33.61	■■■□□ 2.97
TTC3-223	ENST00000492275	BCL2L12	Q9HB09	334 aa		33.59	■■■□□ 2.97
TTC3-223	ENST00000492275	MMP10	P09238	476 aa		33.58	■■■□□ 2.97
TTC3-223	ENST00000492275	FHDC1	Q9C0D6	1143 aa	Predicted RBP	33.58	■■■□□ 2.97
TTC3-223	ENST00000492275	TBC1D2B	Q9UPU7	963 aa		33.58	■■■□□ 2.97
TTC3-223	ENST00000492275	EIF2S2	P20042	333 aa	Known RBP	33.57	■■■□□ 2.96
TTC3-223	ENST00000492275	NGEF	Q8N5V2	710 aa		33.57	■■■□□ 2.96
TTC3-223	ENST00000492275	IL16	Q14005	1332 aa		33.56	■■■□□ 2.96
TTC3-223	ENST00000492275	WDR63	Q8IWG1	891 aa		33.56	■■■□□ 2.96
TTC3-223	ENST00000492275	SYT17	Q9BSW7	474 aa		33.54	■■■□□ 2.96
TTC3-223	ENST00000492275	TM4SF1	P30408	202 aa		33.53	■■■□□ 2.96
TTC3-223	ENST00000492275	DUSP27	Q5VZP5	1158 aa		33.53	■■■□□ 2.96
TTC3-223	ENST00000492275	NPM2	Q86SE8	214 aa	Known RBP	33.53	■■■□□ 2.96
TTC3-223	ENST00000492275	DZIP3	Q86Y13	1208 aa	Known RBP	33.53	■■■□□ 2.96
TTC3-223	ENST00000492275	TSR2	Q969E8	191 aa	Known RBP	33.53	■■■□□ 2.96
TTC3-223	ENST00000492275	ERBB4	Q15303	1308 aa		33.53	■■■□□ 2.96
TTC3-223	ENST00000492275	CAMTA2	O94983	1202 aa		33.52	■■■□□ 2.96
TTC3-223	ENST00000492275	PDIA6	Q15084	440 aa		33.52	■■■□□ 2.96
TTC3-223	ENST00000492275	SCN7A	Q01118	1682 aa		33.52	■■■□□ 2.96
TTC3-223	ENST00000492275	HOXB7	P09629	217 aa		33.51	■■■□□ 2.95
TTC3-223	ENST00000492275	NECTIN2	Q92692	538 aa		33.51	■■■□□ 2.95
TTC3-223	ENST00000492275	BCOR	Q6W2J9	1755 aa		33.51	■■■□□ 2.95
TTC3-223	ENST00000492275	MYL6B	P14649	208 aa		33.5	■■■□□ 2.95
TTC3-223	ENST00000492275	C8orf58	Q8NAV2	365 aa		33.5	■■■□□ 2.95
TTC3-223	ENST00000492275	DDR1	Q08345	913 aa		33.49	■■■□□ 2.95
TTC3-223	ENST00000492275	LRP10	Q7Z4F1	713 aa		33.49	■■■□□ 2.95
TTC3-223	ENST00000492275	KLHL34	Q8N239	644 aa		33.49	■■■□□ 2.95
TTC3-223	ENST00000492275	ZNF521	Q96K83	1311 aa		33.49	■■■□□ 2.95
TTC3-223	ENST00000492275	ELL2	O00472	640 aa	Predicted RBP	33.48	■■■□□ 2.95
TTC3-223	ENST00000492275	NFIX	Q14938	502 aa		33.48	■■■□□ 2.95
TTC3-223	ENST00000492275	PROSER3	Q2NL68	480 aa		33.48	■■■□□ 2.95
TTC3-223	ENST00000492275	SPINK5	Q9NQ38	1064 aa	Predicted RBP	33.48	■■■□□ 2.95
TTC3-223	ENST00000492275	PARP3	Q9Y6F1	533 aa		33.47	■■■□□ 2.95
TTC3-223	ENST00000492275	ANXA1	P04083	346 aa		33.46	■■■□□ 2.95
TTC3-223	ENST00000492275	HDGFL1	Q5TGJ6	251 aa		33.46	■■■□□ 2.95
TTC3-223	ENST00000492275	POLRMT	O00411	1230 aa	Known RBP	33.45	■■■□□ 2.95
TTC3-223	ENST00000492275	TBC1D9B	Q66K14	1250 aa		33.45	■■■□□ 2.95
TTC3-223	ENST00000492275	TSPYL6	Q8N831	410 aa		33.45	■■■□□ 2.95
TTC3-223	ENST00000492275	AFDN	P55196	1824 aa	Known RBP	33.44	■■■□□ 2.94
TTC3-223	ENST00000492275	TTLL7	Q6ZT98	887 aa		33.44	■■■□□ 2.94
TTC3-223	ENST00000492275	CD2AP	Q9Y5K6	639 aa		33.44	■■■□□ 2.94
TTC3-223	ENST00000492275	DDX21	Q9NR30	783 aa	Known RBP eCLIP	33.43	■■■□□ 2.94
TTC3-223	ENST00000492275	FANCI	Q9NVI1	1328 aa		33.43	■■■□□ 2.94
TTC3-223	ENST00000492275	KIF13B	Q9NQT8	1826 aa		33.42	■■■□□ 2.94
TTC3-223	ENST00000492275	BICDL1	Q6ZP65	573 aa		33.42	■■■□□ 2.94
TTC3-223	ENST00000492275	NLGN2	Q8NFZ4	835 aa		33.42	■■■□□ 2.94
TTC3-223	ENST00000492275	CHPF2	Q9P2E5	772 aa		33.42	■■■□□ 2.94

Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms