RNA–Protein interactions for RNA: ENST00000489378.5

SSBP1-212, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 2

Gene SSBP1, Length 1,434 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-212ENST00000489378 L3MBTL2Q969R5 705 aa13.1□□□□□ -0.31
SSBP1-212ENST00000489378 TMEM106CQ9BVX2 250 aa13.1□□□□□ -0.31
SSBP1-212ENST00000489378 RNF181Q9P0P0 153 aa13.1□□□□□ -0.31
SSBP1-212ENST00000489378 SBF1O95248 1867 aa13.08□□□□□ -0.32
SSBP1-212ENST00000489378 LCE2DQ5TA82 110 aaPredicted RBP13.08□□□□□ -0.32
SSBP1-212ENST00000489378 SCUBE2Q9NQ36 999 aa13.08□□□□□ -0.32
SSBP1-212ENST00000489378 C4AP0C0L4 1744 aa13.07□□□□□ -0.32
SSBP1-212ENST00000489378 RRS1Q15050 365 aaKnown RBP13.07□□□□□ -0.32
SSBP1-212ENST00000489378 COG3Q96JB2 828 aa13.07□□□□□ -0.32
SSBP1-212ENST00000489378 DCAF5Q96JK2 942 aa13.07□□□□□ -0.32
SSBP1-212ENST00000489378 CCDC87Q9NVE4 849 aa13.07□□□□□ -0.32
SSBP1-212ENST00000489378 TERF2IPQ9NYB0 399 aa13.07□□□□□ -0.32
SSBP1-212ENST00000489378 SEC24BO95487 1268 aa13.06□□□□□ -0.32
SSBP1-212ENST00000489378 TMF1P82094 1093 aa13.06□□□□□ -0.32
SSBP1-212ENST00000489378 NLGN1Q8N2Q7 840 aa13.06□□□□□ -0.32
SSBP1-212ENST00000489378 RTL1A6NKG5 1358 aa13.06□□□□□ -0.32
SSBP1-212ENST00000489378 POTEMA6NI47 508 aa13.05□□□□□ -0.32
SSBP1-212ENST00000489378 ATP6V1AP38606 617 aa13.05□□□□□ -0.32
SSBP1-212ENST00000489378 PIM2Q9P1W9 311 aa13.05□□□□□ -0.32
SSBP1-212ENST00000489378 ASAP1Q9ULH1 1129 aa13.05□□□□□ -0.32
SSBP1-212ENST00000489378 DALRD3Q5D0E6 543 aaKnown RBP13.05□□□□□ -0.32
SSBP1-212ENST00000489378 GYS1P13807 737 aa13.04□□□□□ -0.32
SSBP1-212ENST00000489378 TRAPPC3LQ5T215 181 aa13.04□□□□□ -0.32
SSBP1-212ENST00000489378 PCDHB8Q9UN66 801 aa13.04□□□□□ -0.32
SSBP1-212ENST00000489378 PARP3Q9Y6F1 533 aa13.04□□□□□ -0.32
SSBP1-212ENST00000489378 SMG6Q86US8 1419 aaKnown RBP13.03□□□□□ -0.32
SSBP1-212ENST00000489378 FOXN1O15353 648 aa13.03□□□□□ -0.32
SSBP1-212ENST00000489378 VEGFAP15692 232 aaPredicted RBP13.03□□□□□ -0.32
SSBP1-212ENST00000489378 NKX1-1Q15270 411 aaPredicted RBP13.03□□□□□ -0.32
SSBP1-212ENST00000489378 ARHGEF1Q92888 912 aaKnown RBP13.03□□□□□ -0.32
SSBP1-212ENST00000489378 RTCBQ9Y3I0 505 aaKnown RBP13.03□□□□□ -0.32
SSBP1-212ENST00000489378 CHRNA5P30532 468 aa13.02□□□□□ -0.33
SSBP1-212ENST00000489378 IRX5P78411 483 aaPredicted RBP13.02□□□□□ -0.33
SSBP1-212ENST00000489378 RASSF7Q02833 373 aa13.02□□□□□ -0.33
SSBP1-212ENST00000489378 HSP90AB2PQ58FF8 381 aa13.02□□□□□ -0.33
SSBP1-212ENST00000489378 POTEGQ6S5H5 508 aa13.02□□□□□ -0.33
SSBP1-212ENST00000489378 TMOD3Q9NYL9 352 aa13.02□□□□□ -0.33
SSBP1-212ENST00000489378 FAM161AQ3B820 660 aa13.01□□□□□ -0.33
SSBP1-212ENST00000489378 ATG3Q9NT62 314 aa13.01□□□□□ -0.33
SSBP1-212ENST00000489378 PCDH10Q9P2E7 1040 aa13.01□□□□□ -0.33
SSBP1-212ENST00000489378 MKRN1Q9UHC7 482 aaKnown RBP13.01□□□□□ -0.33
SSBP1-212ENST00000489378 KDM6AO15550 1401 aaPredicted RBP13□□□□□ -0.33
SSBP1-212ENST00000489378 INSRP06213 1382 aa13□□□□□ -0.33
SSBP1-212ENST00000489378 KDRP35968 1356 aa13□□□□□ -0.33
SSBP1-212ENST00000489378 GLTPD2A6NH11 291 aa13□□□□□ -0.33
SSBP1-212ENST00000489378 SLC4A9Q96Q91 983 aa13□□□□□ -0.33
SSBP1-212ENST00000489378 ZC3H4Q9UPT8 1303 aaKnown RBP12.99□□□□□ -0.33
SSBP1-212ENST00000489378 RFC4P35249 363 aa12.99□□□□□ -0.33
SSBP1-212ENST00000489378 GSE1Q14687 1217 aa12.99□□□□□ -0.33
SSBP1-212ENST00000489378 PRDM10Q9NQV6 1147 aa12.99□□□□□ -0.33
SSBP1-212ENST00000489378 POTECB2RU33 542 aa12.98□□□□□ -0.33
SSBP1-212ENST00000489378 DDR1Q08345 913 aa12.98□□□□□ -0.33
SSBP1-212ENST00000489378 RPS6KA4O75676 772 aa12.97□□□□□ -0.33
SSBP1-212ENST00000489378 CHRM1P11229 460 aaPredicted RBP12.97□□□□□ -0.33
SSBP1-212ENST00000489378 IFNLR1Q8IU57 520 aaPredicted RBP12.97□□□□□ -0.33
SSBP1-212ENST00000489378 GGNBP2Q9H3C7 697 aa12.97□□□□□ -0.33
SSBP1-212ENST00000489378 MYH14Q7Z406 1995 aaKnown RBP12.97□□□□□ -0.33
SSBP1-212ENST00000489378 COL5A3P25940 1745 aaPredicted RBP12.97□□□□□ -0.33
SSBP1-212ENST00000489378 RC3H1Q5TC82 1133 aaKnown RBP12.96□□□□□ -0.33
SSBP1-212ENST00000489378 SIN3AQ96ST3 1273 aa12.96□□□□□ -0.33
SSBP1-212ENST00000489378 SRP68Q9UHB9 627 aaKnown RBP12.96□□□□□ -0.33
SSBP1-212ENST00000489378 SPG7Q9UQ90 795 aa12.96□□□□□ -0.33
SSBP1-212ENST00000489378 TIAM2Q8IVF5 1701 aa12.96□□□□□ -0.33
SSBP1-212ENST00000489378 FLT4P35916 1363 aa12.96□□□□□ -0.33
SSBP1-212ENST00000489378 CCDC88AQ3V6T2 1871 aa12.96□□□□□ -0.33
SSBP1-212ENST00000489378 CNTNAP4Q9C0A0 1308 aa12.96□□□□□ -0.34
SSBP1-212ENST00000489378 FYB1O15117 783 aa12.96□□□□□ -0.34
SSBP1-212ENST00000489378 LMNB1P20700 586 aa12.96□□□□□ -0.34
SSBP1-212ENST00000489378 PUS7Q96PZ0 661 aaKnown RBP12.96□□□□□ -0.34
SSBP1-212ENST00000489378 CARD11Q9BXL7 1154 aa12.96□□□□□ -0.34
SSBP1-212ENST00000489378 NCAPD2Q15021 1401 aa12.95□□□□□ -0.34
SSBP1-212ENST00000489378 CTCFP49711 727 aaPredicted RBP12.95□□□□□ -0.34
SSBP1-212ENST00000489378 ABHD8Q96I13 439 aa12.95□□□□□ -0.34
SSBP1-212ENST00000489378 ZNF831Q5JPB2 1677 aa12.94□□□□□ -0.34
SSBP1-212ENST00000489378 PHKG2P15735 406 aa12.94□□□□□ -0.34
SSBP1-212ENST00000489378 CNTNAP1P78357 1384 aa12.93□□□□□ -0.34
SSBP1-212ENST00000489378 PLCG2P16885 1265 aa12.93□□□□□ -0.34
SSBP1-212ENST00000489378 LBX1P52954 281 aa12.93□□□□□ -0.34
SSBP1-212ENST00000489378 FAM163AQ96GL9 167 aaPredicted RBP12.93□□□□□ -0.34
SSBP1-212ENST00000489378 USP42Q9H9J4 1324 aaKnown RBP12.92□□□□□ -0.34
SSBP1-212ENST00000489378 POLRMTO00411 1230 aaKnown RBP12.92□□□□□ -0.34
SSBP1-212ENST00000489378 NEUROD1Q13562 356 aa12.92□□□□□ -0.34
SSBP1-212ENST00000489378 IFNL2Q8IZJ0 200 aa12.92□□□□□ -0.34
SSBP1-212ENST00000489378 AIDAQ96BJ3 306 aa12.92□□□□□ -0.34
SSBP1-212ENST00000489378 KIF24Q5T7B8 1368 aa12.92□□□□□ -0.34
SSBP1-212ENST00000489378 NFKBIEO00221 500 aa12.91□□□□□ -0.34
SSBP1-212ENST00000489378 VEGFBP49765 207 aa12.91□□□□□ -0.34
SSBP1-212ENST00000489378 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.91□□□□□ -0.342e-7■■□□□ 12.8
SSBP1-212ENST00000489378 EMILIN1Q9Y6C2 1016 aa12.91□□□□□ -0.34
SSBP1-212ENST00000489378 TM4SF1P30408 202 aa12.9□□□□□ -0.34
SSBP1-212ENST00000489378 ZNF467Q7Z7K2 595 aaPredicted RBP12.9□□□□□ -0.34
SSBP1-212ENST00000489378 OCEL1Q9H607 264 aa12.9□□□□□ -0.34
SSBP1-212ENST00000489378 WBP1LQ9NX94 342 aa12.9□□□□□ -0.34
SSBP1-212ENST00000489378 CRKLP46109 303 aaKnown RBP12.89□□□□□ -0.35
SSBP1-212ENST00000489378 MLLT1Q03111 559 aaPredicted RBP12.89□□□□□ -0.35
SSBP1-212ENST00000489378 TESK2Q96S53 571 aa12.89□□□□□ -0.35
SSBP1-212ENST00000489378 EYA1Q99502 592 aa12.89□□□□□ -0.35
SSBP1-212ENST00000489378 PLSCR2Q9NRY7 297 aa12.89□□□□□ -0.35
SSBP1-212ENST00000489378 TONSLQ96HA7 1378 aa12.89□□□□□ -0.35
SSBP1-212ENST00000489378 VIRMAQ69YN4 1812 aaKnown RBP12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms