RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	EDC4	Q6P2E9	1401 aa	Known RBP	12.16	□□□□□ -0.46
USP4-213	ENST00000488520		A0A1W2PP64	1363 aa		12.16	□□□□□ -0.46
USP4-213	ENST00000488520	CEP350	Q5VT06	3117 aa		12.15	□□□□□ -0.46
USP4-213	ENST00000488520	GIGYF1	O75420	1035 aa	Predicted RBP	12.15	□□□□□ -0.46
USP4-213	ENST00000488520	NUDT7	P0C024	238 aa		12.15	□□□□□ -0.46
USP4-213	ENST00000488520	FBLN1	P23142	703 aa		12.15	□□□□□ -0.46
USP4-213	ENST00000488520	SLC27A3	Q5K4L6	730 aa		12.15	□□□□□ -0.46
USP4-213	ENST00000488520	IP6K1	Q92551	441 aa		12.15	□□□□□ -0.46
USP4-213	ENST00000488520	KIF20B	Q96Q89	1820 aa		12.15	□□□□□ -0.46
USP4-213	ENST00000488520	TBC1D12	O60347	775 aa		12.14	□□□□□ -0.47
USP4-213	ENST00000488520	UBR3	Q6ZT12	1888 aa		12.14	□□□□□ -0.47
USP4-213	ENST00000488520	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.13	□□□□□ -0.47
USP4-213	ENST00000488520	VARS2	Q5ST30	1063 aa	Known RBP	12.13	□□□□□ -0.47
USP4-213	ENST00000488520	TERF2IP	Q9NYB0	399 aa		12.13	□□□□□ -0.47
USP4-213	ENST00000488520	ANKRD36B	Q8N2N9	1353 aa		12.13	□□□□□ -0.47
USP4-213	ENST00000488520	MAP2	P11137	1827 aa	Known RBP	12.13	□□□□□ -0.47
USP4-213	ENST00000488520	MEGF6	O75095	1541 aa		12.12	□□□□□ -0.47
USP4-213	ENST00000488520	AMPH	P49418	695 aa		12.12	□□□□□ -0.47
USP4-213	ENST00000488520	MSL1	Q68DK7	614 aa		12.12	□□□□□ -0.47
USP4-213	ENST00000488520	ZCRB1	Q8TBF4	217 aa	Known RBP	12.12	□□□□□ -0.47
USP4-213	ENST00000488520	OXER1	Q8TDS5	423 aa		12.12	□□□□□ -0.47
USP4-213	ENST00000488520	CCNL1	Q9UK58	526 aa	Predicted RBP	12.12	□□□□□ -0.47
USP4-213	ENST00000488520	NSD2	O96028	1365 aa		12.12	□□□□□ -0.47
USP4-213	ENST00000488520	TOGARAM1	Q9Y4F4	1720 aa		12.11	□□□□□ -0.47
USP4-213	ENST00000488520	SLC24A1	O60721	1099 aa		12.11	□□□□□ -0.47
USP4-213	ENST00000488520	YBX3	P16989	372 aa	Known RBP eCLIP	12.11	□□□□□ -0.47
USP4-213	ENST00000488520	HOXC9	P31274	260 aa		12.11	□□□□□ -0.47
USP4-213	ENST00000488520	COL23A1	Q86Y22	540 aa	Predicted RBP	12.11	□□□□□ -0.47
USP4-213	ENST00000488520	MAP3K19	Q56UN5	1328 aa		12.11	□□□□□ -0.47
USP4-213	ENST00000488520	USHBP1	Q8N6Y0	703 aa		12.1	□□□□□ -0.47
USP4-213	ENST00000488520	COG3	Q96JB2	828 aa		12.1	□□□□□ -0.47
USP4-213	ENST00000488520	C4B	P0C0L5	1744 aa		12.09	□□□□□ -0.47
USP4-213	ENST00000488520	USP47	Q96K76	1375 aa		12.09	□□□□□ -0.47
USP4-213	ENST00000488520	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.08	□□□□□ -0.48
USP4-213	ENST00000488520	GRIN3B	O60391	1043 aa		12.08	□□□□□ -0.48
USP4-213	ENST00000488520	EIF4G2	P78344	907 aa	Known RBP eCLIP	12.08	□□□□□ -0.48
USP4-213	ENST00000488520	RRS1	Q15050	365 aa	Known RBP	12.08	□□□□□ -0.48
USP4-213	ENST00000488520	NBPF6	Q5VWK0	638 aa		12.07	□□□□□ -0.48
USP4-213	ENST00000488520	NBPF4	Q96M43	638 aa		12.07	□□□□□ -0.48
USP4-213	ENST00000488520	LHX6	Q9UPM6	363 aa		12.07	□□□□□ -0.48
USP4-213	ENST00000488520	PKD1L3	Q7Z443	1732 aa		12.06	□□□□□ -0.48
USP4-213	ENST00000488520	ATP10D	Q9P241	1426 aa		12.06	□□□□□ -0.48
USP4-213	ENST00000488520	ZNF526	Q8TF50	670 aa	Predicted RBP	12.06	□□□□□ -0.48
USP4-213	ENST00000488520	WWC3	Q9ULE0	1092 aa		12.06	□□□□□ -0.48
USP4-213	ENST00000488520	MPRIP	Q6WCQ1	1025 aa		12.05	□□□□□ -0.48
USP4-213	ENST00000488520	ZNF687	Q8N1G0	1237 aa		12.05	□□□□□ -0.48
USP4-213	ENST00000488520	RAPGEF4	Q8WZA2	1011 aa		12.05	□□□□□ -0.48
USP4-213	ENST00000488520	GGNBP2	Q9H3C7	697 aa		12.05	□□□□□ -0.48
USP4-213	ENST00000488520	ST20-MTHFS	A0A0A6YYL1	179 aa		12.04	□□□□□ -0.48
USP4-213	ENST00000488520	TAT	P17735	454 aa	Predicted RBP	12.04	□□□□□ -0.48
USP4-213	ENST00000488520	IFFO2	Q5TF58	517 aa		12.04	□□□□□ -0.48
USP4-213	ENST00000488520	SMIM5	Q71RC9	77 aa		12.04	□□□□□ -0.48
USP4-213	ENST00000488520	PUS7	Q96PZ0	661 aa	Known RBP	12.04	□□□□□ -0.48
USP4-213	ENST00000488520	EMILIN3	Q9NT22	766 aa		12.04	□□□□□ -0.48
USP4-213	ENST00000488520	SMG6	Q86US8	1419 aa	Known RBP	12.03	□□□□□ -0.48
USP4-213	ENST00000488520	CAMK2B	Q13554	666 aa		12.03	□□□□□ -0.48
USP4-213	ENST00000488520	TESK2	Q96S53	571 aa		12.03	□□□□□ -0.48
USP4-213	ENST00000488520	GPBP1L1	Q9HC44	474 aa	Predicted RBP	12.03	□□□□□ -0.48
USP4-213	ENST00000488520	RTL1	A6NKG5	1358 aa		12.03	□□□□□ -0.48
USP4-213	ENST00000488520	PALLD	Q8WX93	1383 aa		12.03	□□□□□ -0.48
USP4-213	ENST00000488520	KIF13B	Q9NQT8	1826 aa		12.02	□□□□□ -0.48
USP4-213	ENST00000488520	FYB1	O15117	783 aa		12.02	□□□□□ -0.49
USP4-213	ENST00000488520	PHF14	O94880	888 aa		12.02	□□□□□ -0.49
USP4-213	ENST00000488520	HSP90AB2P	Q58FF8	381 aa		12.02	□□□□□ -0.49
USP4-213	ENST00000488520	KRTAP3-3	Q9BYR6	98 aa		12.02	□□□□□ -0.49
USP4-213	ENST00000488520	KRTAP3-2	Q9BYR7	98 aa		12.02	□□□□□ -0.49
USP4-213	ENST00000488520	MAP3K9	P80192	1104 aa		12.01	□□□□□ -0.49
USP4-213	ENST00000488520	TMF1	P82094	1093 aa		12.01	□□□□□ -0.49
USP4-213	ENST00000488520	CDCA8	Q53HL2	280 aa		12.01	□□□□□ -0.49
USP4-213	ENST00000488520	AMIGO3	Q86WK7	504 aa		12.01	□□□□□ -0.49
USP4-213	ENST00000488520	TSHZ2	Q9NRE2	1034 aa		12.01	□□□□□ -0.49
USP4-213	ENST00000488520	CD2AP	Q9Y5K6	639 aa		12.01	□□□□□ -0.49
USP4-213	ENST00000488520	VIRMA	Q69YN4	1812 aa	Known RBP	12.01	□□□□□ -0.49
USP4-213	ENST00000488520	CGNL1	Q0VF96	1302 aa		12.01	□□□□□ -0.49
USP4-213	ENST00000488520	PCDH11X	Q9BZA7	1347 aa		12.01	□□□□□ -0.49
USP4-213	ENST00000488520	PCDH11Y	Q9BZA8	1340 aa		12.01	□□□□□ -0.49
USP4-213	ENST00000488520	BRCA1	P38398	1863 aa	Known RBP	12.01	□□□□□ -0.49
USP4-213	ENST00000488520	KIAA1551	Q9HCM1	1747 aa		12	□□□□□ -0.49
USP4-213	ENST00000488520	ANKRD26	Q9UPS8	1709 aa		12	□□□□□ -0.49
USP4-213	ENST00000488520	HSPA5	P11021	654 aa	Known RBP	12	□□□□□ -0.49
USP4-213	ENST00000488520	PLCB2	Q00722	1185 aa		12	□□□□□ -0.49
USP4-213	ENST00000488520	FLAD1	Q8NFF5	587 aa		12	□□□□□ -0.49
USP4-213	ENST00000488520	AK7	Q96M32	723 aa		12	□□□□□ -0.49
USP4-213	ENST00000488520	WDR70	Q9NW82	654 aa		12	□□□□□ -0.49
USP4-213	ENST00000488520	CCDC88A	Q3V6T2	1871 aa		12	□□□□□ -0.49
USP4-213	ENST00000488520	CYP27B1	O15528	508 aa		11.99	□□□□□ -0.49
USP4-213	ENST00000488520	PLSCR2	Q9NRY7	297 aa		11.99	□□□□□ -0.49
USP4-213	ENST00000488520	IGSF1	Q8N6C5	1336 aa		11.99	□□□□□ -0.49
USP4-213	ENST00000488520	MYH14	Q7Z406	1995 aa	Known RBP	11.99	□□□□□ -0.49
USP4-213	ENST00000488520	INSR	P06213	1382 aa		11.98	□□□□□ -0.49
USP4-213	ENST00000488520	POLR3GL	Q9BT43	218 aa		11.98	□□□□□ -0.49
USP4-213	ENST00000488520	ARFGEF1	Q9Y6D6	1849 aa		11.97	□□□□□ -0.49
USP4-213	ENST00000488520	ADCY9	O60503	1353 aa		11.97	□□□□□ -0.49
USP4-213	ENST00000488520	FLT4	P35916	1363 aa		11.97	□□□□□ -0.49
USP4-213	ENST00000488520	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	11.97	□□□□□ -0.49
USP4-213	ENST00000488520	EVI5	O60447	810 aa		11.97	□□□□□ -0.49
USP4-213	ENST00000488520	HSPA6	P17066	643 aa		11.97	□□□□□ -0.49
USP4-213	ENST00000488520	PIGB	Q92521	554 aa		11.97	□□□□□ -0.49
USP4-213	ENST00000488520	SMARCC1	Q92922	1105 aa	Predicted RBP	11.97	□□□□□ -0.49
USP4-213	ENST00000488520	SBF1	O95248	1867 aa		11.97	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms