RNA–Protein interactions for RNA: ENST00000487401.1

SREBF1-215, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-215ENST00000487401 GPBP1L1Q9HC44 474 aaPredicted RBP16.6■□□□□ 0.25
SREBF1-215ENST00000487401 ATP10DQ9P241 1426 aa16.6■□□□□ 0.25
SREBF1-215ENST00000487401 CICQ96RK0 1608 aaPredicted RBP16.59■□□□□ 0.25
SREBF1-215ENST00000487401 NPM2Q86SE8 214 aaKnown RBP16.59■□□□□ 0.25
SREBF1-215ENST00000487401 ZNF526Q8TF50 670 aaPredicted RBP16.59■□□□□ 0.25
SREBF1-215ENST00000487401 PIM2Q9P1W9 311 aa16.59■□□□□ 0.25
SREBF1-215ENST00000487401 COL15A1P39059 1388 aa16.59■□□□□ 0.25
SREBF1-215ENST00000487401 SENP3-EIF4A1A0A087X0R7 540 aa16.58■□□□□ 0.24
SREBF1-215ENST00000487401 NEFMP07197 916 aa16.58■□□□□ 0.24
SREBF1-215ENST00000487401 NFIXQ14938 502 aa16.58■□□□□ 0.24
SREBF1-215ENST00000487401 DALRD3Q5D0E6 543 aaKnown RBP16.58■□□□□ 0.24
SREBF1-215ENST00000487401 HEG1Q9ULI3 1381 aa16.58■□□□□ 0.24
SREBF1-215ENST00000487401 KCPQ6ZWJ8 1503 aa16.57■□□□□ 0.24
SREBF1-215ENST00000487401 KCNA3P22001 575 aa16.57■□□□□ 0.24
SREBF1-215ENST00000487401 EIF5P55010 431 aaKnown RBP16.57■□□□□ 0.24
SREBF1-215ENST00000487401 ZNF330Q9Y3S2 320 aaPredicted RBP16.57■□□□□ 0.24
SREBF1-215ENST00000487401 CEMIPQ8WUJ3 1361 aa16.56■□□□□ 0.24
SREBF1-215ENST00000487401 KCNQ3O43525 872 aa16.56■□□□□ 0.24
SREBF1-215ENST00000487401 CHRNA5P30532 468 aa16.56■□□□□ 0.24
SREBF1-215ENST00000487401 MCM10Q7L590 875 aa16.56■□□□□ 0.24
SREBF1-215ENST00000487401 HTATSF1O43719 755 aaKnown RBP16.55■□□□□ 0.24
SREBF1-215ENST00000487401 SERPINB2P05120 415 aa16.55■□□□□ 0.24
SREBF1-215ENST00000487401 BICDL1Q6ZP65 573 aa16.55■□□□□ 0.24
SREBF1-215ENST00000487401 BCL2L12Q9HB09 334 aa16.55■□□□□ 0.24
SREBF1-215ENST00000487401 ADCY9O60503 1353 aa16.54■□□□□ 0.24
SREBF1-215ENST00000487401 A1BGP04217 495 aa16.54■□□□□ 0.24
SREBF1-215ENST00000487401 IL6STP40189 918 aaPredicted RBP16.54■□□□□ 0.24
SREBF1-215ENST00000487401 TBC1D2BQ9UPU7 963 aa16.54■□□□□ 0.24
SREBF1-215ENST00000487401 COL5A3P25940 1745 aaPredicted RBP16.53■□□□□ 0.24
SREBF1-215ENST00000487401 DCTN1Q14203 1278 aa16.53■□□□□ 0.24
SREBF1-215ENST00000487401 SCN11AQ9UI33 1791 aa16.53■□□□□ 0.24
SREBF1-215ENST00000487401 C4AP0C0L4 1744 aa16.53■□□□□ 0.24
SREBF1-215ENST00000487401 SNRPA1P09661 255 aaKnown RBP16.52■□□□□ 0.24
SREBF1-215ENST00000487401 PNNQ9H307 717 aaKnown RBP16.52■□□□□ 0.24
SREBF1-215ENST00000487401 TJP1Q07157 1748 aa16.52■□□□□ 0.24
SREBF1-215ENST00000487401 CHD4Q14839 1912 aa16.51■□□□□ 0.23
SREBF1-215ENST00000487401 TAF7Q15545 349 aaPredicted RBP16.51■□□□□ 0.23
SREBF1-215ENST00000487401 C9orf131Q5VYM1 1079 aa16.51■□□□□ 0.23
SREBF1-215ENST00000487401 H0YIN7 160 aa16.5■□□□□ 0.23
SREBF1-215ENST00000487401 TBC1D9BQ66K14 1250 aa16.5■□□□□ 0.23
SREBF1-215ENST00000487401 C2CD5Q86YS7 1000 aa16.5■□□□□ 0.23
SREBF1-215ENST00000487401 USP16Q9Y5T5 823 aa16.5■□□□□ 0.23
SREBF1-215ENST00000487401 ADAMTS7Q9UKP4 1686 aa16.5■□□□□ 0.23
SREBF1-215ENST00000487401 MYH14Q7Z406 1995 aaKnown RBP16.49■□□□□ 0.23
SREBF1-215ENST00000487401 SETDB2Q96T68 719 aa16.49■□□□□ 0.23
SREBF1-215ENST00000487401 PRAMEF22A3QJZ6 481 aa16.48■□□□□ 0.23
SREBF1-215ENST00000487401 NPHP1O15259 732 aa16.48■□□□□ 0.23
SREBF1-215ENST00000487401 CAMTA2O94983 1202 aa16.48■□□□□ 0.23
SREBF1-215ENST00000487401 RALBP1Q15311 655 aa16.48■□□□□ 0.23
SREBF1-215ENST00000487401 DZIP3Q86Y13 1208 aaKnown RBP16.48■□□□□ 0.23
SREBF1-215ENST00000487401 TTLL6Q8N841 843 aa16.48■□□□□ 0.23
SREBF1-215ENST00000487401 PNISRQ8TF01 805 aaKnown RBP16.48■□□□□ 0.23
SREBF1-215ENST00000487401 MIS18AQ9NYP9 233 aa16.48■□□□□ 0.23
SREBF1-215ENST00000487401 MAPK8IP3Q9UPT6 1336 aa16.47■□□□□ 0.23
SREBF1-215ENST00000487401 PIP4K2AP48426 406 aaPredicted RBP16.47■□□□□ 0.23
SREBF1-215ENST00000487401 NFE2L2Q16236 605 aa16.47■□□□□ 0.23
SREBF1-215ENST00000487401 BRIP1Q9BX63 1249 aa16.47■□□□□ 0.23
SREBF1-215ENST00000487401 PDZRN3Q9UPQ7 1066 aa16.47■□□□□ 0.23
SREBF1-215ENST00000487401 PDE6BP35913 854 aa16.46■□□□□ 0.23
SREBF1-215ENST00000487401 ZNF622Q969S3 477 aaKnown RBP eCLIP16.46■□□□□ 0.232e-12■□□□□ 9.3
SREBF1-215ENST00000487401 PLEKHF1Q96S99 279 aa16.46■□□□□ 0.23
SREBF1-215ENST00000487401 RNF181Q9P0P0 153 aa16.46■□□□□ 0.23
SREBF1-215ENST00000487401 KIF3CO14782 793 aa16.45■□□□□ 0.22
SREBF1-215ENST00000487401 DDX10Q13206 875 aaKnown RBP16.45■□□□□ 0.22
SREBF1-215ENST00000487401 PRR5LQ6MZQ0 368 aa16.45■□□□□ 0.22
SREBF1-215ENST00000487401 CCDC24Q8N4L8 307 aa16.45■□□□□ 0.22
SREBF1-215ENST00000487401 CNBD1Q8NA66 436 aa16.45■□□□□ 0.22
SREBF1-215ENST00000487401 ZNF652Q9Y2D9 606 aa16.45■□□□□ 0.22
SREBF1-215ENST00000487401 CARMIL3Q8ND23 1372 aa16.45■□□□□ 0.22
SREBF1-215ENST00000487401 ST5P78524 1137 aa16.44■□□□□ 0.22
SREBF1-215ENST00000487401 CLEC4GQ6UXB4 293 aa16.44■□□□□ 0.22
SREBF1-215ENST00000487401 NBPF26B4DH59 902 aa16.42■□□□□ 0.22
SREBF1-215ENST00000487401 NBPF10Q6P3W6 841 aaKnown RBP16.42■□□□□ 0.22
SREBF1-215ENST00000487401 NBPF5PQ86XG9 351 aaPredicted RBP16.42■□□□□ 0.22
SREBF1-215ENST00000487401 NBPF15Q8N660 670 aa16.42■□□□□ 0.22
SREBF1-215ENST00000487401 THUMPD2Q9BTF0 503 aaKnown RBP16.42■□□□□ 0.22
SREBF1-215ENST00000487401 NMRK2Q9NPI5 230 aa16.42■□□□□ 0.22
SREBF1-215ENST00000487401 KIF13BQ9NQT8 1826 aa16.42■□□□□ 0.22
SREBF1-215ENST00000487401 KDM2BQ8NHM5 1336 aa16.42■□□□□ 0.22
SREBF1-215ENST00000487401 HSPA6P17066 643 aa16.41■□□□□ 0.22
SREBF1-215ENST00000487401 LMNB1P20700 586 aa16.41■□□□□ 0.22
SREBF1-215ENST00000487401 RASSF7Q02833 373 aa16.41■□□□□ 0.22
SREBF1-215ENST00000487401 C16orf71Q8IYS4 520 aaPredicted RBP16.41■□□□□ 0.22
SREBF1-215ENST00000487401 TOMM70O94826 608 aa16.4■□□□□ 0.22
SREBF1-215ENST00000487401 EIF4A1P60842 406 aaKnown RBP16.4■□□□□ 0.22
SREBF1-215ENST00000487401 NGEFQ8N5V2 710 aa16.4■□□□□ 0.22
SREBF1-215ENST00000487401 ZNF219Q9P2Y4 722 aaPredicted RBP16.4■□□□□ 0.22
SREBF1-215ENST00000487401 N4BP2Q86UW6 1770 aaPredicted RBP16.4■□□□□ 0.22
SREBF1-215ENST00000487401 KIAA1551Q9HCM1 1747 aa16.39■□□□□ 0.21
SREBF1-215ENST00000487401 UBR2Q8IWV8 1755 aa16.39■□□□□ 0.21
SREBF1-215ENST00000487401 RGL2O15211 777 aa16.39■□□□□ 0.21
SREBF1-215ENST00000487401 RIPK4P57078 832 aa16.39■□□□□ 0.21
SREBF1-215ENST00000487401 TPTE2Q6XPS3 522 aa16.39■□□□□ 0.21
SREBF1-215ENST00000487401 CNKSR1Q969H4 720 aa16.39■□□□□ 0.21
SREBF1-215ENST00000487401 NIP7Q9Y221 180 aaKnown RBP eCLIP16.39■□□□□ 0.21
SREBF1-215ENST00000487401 RRP7AQ9Y3A4 280 aaKnown RBP16.39■□□□□ 0.21
SREBF1-215ENST00000487401 C21orf2O43822 256 aa16.38■□□□□ 0.21
SREBF1-215ENST00000487401 STYK1Q6J9G0 422 aa16.38■□□□□ 0.21
SREBF1-215ENST00000487401 TSPYL4Q9UJ04 414 aa16.38■□□□□ 0.21
SREBF1-215ENST00000487401 MYBBP1AQ9BQG0 1328 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms