RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 GRIN3BO60391 1043 aa10.73□□□□□ -0.69
SF3A1-208ENST00000485618 RC3H1Q5TC82 1133 aaKnown RBP10.73□□□□□ -0.69
SF3A1-208ENST00000485618 WWC1Q8IX03 1113 aa10.73□□□□□ -0.69
SF3A1-208ENST00000485618 THUMPD2Q9BTF0 503 aaKnown RBP10.73□□□□□ -0.69
SF3A1-208ENST00000485618 MYH16Q9H6N6 1097 aa10.73□□□□□ -0.69
SF3A1-208ENST00000485618 C4BP0C0L5 1744 aa10.72□□□□□ -0.69
SF3A1-208ENST00000485618 CHL1O00533 1208 aa10.72□□□□□ -0.69
SF3A1-208ENST00000485618 SALL2Q9Y467 1007 aaPredicted RBP10.72□□□□□ -0.69
SF3A1-208ENST00000485618 ATP10DQ9P241 1426 aa10.72□□□□□ -0.69
SF3A1-208ENST00000485618 TAF1LQ8IZX4 1826 aa10.72□□□□□ -0.69
SF3A1-208ENST00000485618 ADRA2BP18089 450 aa10.71□□□□□ -0.69
SF3A1-208ENST00000485618 SOS1Q07889 1333 aaPredicted RBP10.71□□□□□ -0.69
SF3A1-208ENST00000485618 GOLGA2Q08379 1002 aa10.71□□□□□ -0.69
SF3A1-208ENST00000485618 ZNF496Q96IT1 587 aaPredicted RBP10.71□□□□□ -0.69
SF3A1-208ENST00000485618 MIS18AQ9NYP9 233 aa10.71□□□□□ -0.69
SF3A1-208ENST00000485618 ADAMTS7Q9UKP4 1686 aa10.71□□□□□ -0.69
SF3A1-208ENST00000485618 RTCBQ9Y3I0 505 aaKnown RBP10.71□□□□□ -0.69
SF3A1-208ENST00000485618 GOLGB1Q14789 3259 aaKnown RBP10.7□□□□□ -0.7
SF3A1-208ENST00000485618 HEG1Q9ULI3 1381 aa10.7□□□□□ -0.7
SF3A1-208ENST00000485618 A0A087WZG4 1122 aa10.7□□□□□ -0.7
SF3A1-208ENST00000485618 PHF14O94880 888 aa10.7□□□□□ -0.7
SF3A1-208ENST00000485618 HOXB7P09629 217 aa10.7□□□□□ -0.7
SF3A1-208ENST00000485618 CD2APQ9Y5K6 639 aa10.7□□□□□ -0.7
SF3A1-208ENST00000485618 CNTNAP4Q9C0A0 1308 aa10.69□□□□□ -0.7
SF3A1-208ENST00000485618 DLG5Q8TDM6 1919 aa10.69□□□□□ -0.7
SF3A1-208ENST00000485618 E9PSI1 815 aa10.69□□□□□ -0.7
SF3A1-208ENST00000485618 GNPATO15228 680 aa10.69□□□□□ -0.7
SF3A1-208ENST00000485618 SSFA2P28290 1259 aa10.69□□□□□ -0.7
SF3A1-208ENST00000485618 EIF4A1P60842 406 aaKnown RBP10.69□□□□□ -0.7
SF3A1-208ENST00000485618 TRAPPC3LQ5T215 181 aa10.69□□□□□ -0.7
SF3A1-208ENST00000485618 CCDC87Q9NVE4 849 aa10.69□□□□□ -0.7
SF3A1-208ENST00000485618 RPS6KA4O75676 772 aa10.68□□□□□ -0.7
SF3A1-208ENST00000485618 ZNF853P0CG23 659 aa10.68□□□□□ -0.7
SF3A1-208ENST00000485618 CYP19A1P11511 503 aaPredicted RBP10.68□□□□□ -0.7
SF3A1-208ENST00000485618 RFC4P35249 363 aa10.68□□□□□ -0.7
SF3A1-208ENST00000485618 CRKLP46109 303 aaKnown RBP10.68□□□□□ -0.7
SF3A1-208ENST00000485618 HNRNPUQ00839 825 aaKnown RBP eCLIP10.68□□□□□ -0.7
SF3A1-208ENST00000485618 ITPK1Q13572 414 aa10.68□□□□□ -0.7
SF3A1-208ENST00000485618 DNAJC10Q8IXB1 793 aa10.68□□□□□ -0.7
SF3A1-208ENST00000485618 WWC3Q9ULE0 1092 aa10.68□□□□□ -0.7
SF3A1-208ENST00000485618 UBR3Q6ZT12 1888 aa10.68□□□□□ -0.7
SF3A1-208ENST00000485618 ADCY9O60503 1353 aa10.67□□□□□ -0.7
SF3A1-208ENST00000485618 ERBB4Q15303 1308 aa10.67□□□□□ -0.7
SF3A1-208ENST00000485618 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.67□□□□□ -0.7
SF3A1-208ENST00000485618 KCNQ3O43525 872 aa10.67□□□□□ -0.7
SF3A1-208ENST00000485618 AMIGO3Q86WK7 504 aa10.67□□□□□ -0.7
SF3A1-208ENST00000485618 LINC00116Q8NCU8 138 aa10.67□□□□□ -0.7
SF3A1-208ENST00000485618 ZNF526Q8TF50 670 aaPredicted RBP10.67□□□□□ -0.7
SF3A1-208ENST00000485618 GPBP1L1Q9HC44 474 aaPredicted RBP10.67□□□□□ -0.7
SF3A1-208ENST00000485618 MBIPQ9NS73 344 aa10.67□□□□□ -0.7
SF3A1-208ENST00000485618 VIRMAQ69YN4 1812 aaKnown RBP10.67□□□□□ -0.7
SF3A1-208ENST00000485618 ZNF831Q5JPB2 1677 aa10.66□□□□□ -0.7
SF3A1-208ENST00000485618 ZPR1O75312 459 aa10.66□□□□□ -0.7
SF3A1-208ENST00000485618 IL6STP40189 918 aaPredicted RBP10.66□□□□□ -0.7
SF3A1-208ENST00000485618 SMIM5Q71RC9 77 aa10.66□□□□□ -0.7
SF3A1-208ENST00000485618 SLC4A9Q96Q91 983 aa10.66□□□□□ -0.7
SF3A1-208ENST00000485618 EIF2S2P20042 333 aaKnown RBP10.65□□□□□ -0.7
SF3A1-208ENST00000485618 CANXP27824 592 aaKnown RBP10.65□□□□□ -0.7
SF3A1-208ENST00000485618 CCDC30Q5VVM6 783 aa10.65□□□□□ -0.7
SF3A1-208ENST00000485618 DUSP27Q5VZP5 1158 aa10.65□□□□□ -0.7
SF3A1-208ENST00000485618 STK31Q9BXU1 1019 aa10.65□□□□□ -0.7
SF3A1-208ENST00000485618 SIPA1L3O60292 1781 aaPredicted RBP10.65□□□□□ -0.71
SF3A1-208ENST00000485618 KCPQ6ZWJ8 1503 aa10.64□□□□□ -0.71
SF3A1-208ENST00000485618 HDGFL1Q5TGJ6 251 aa10.64□□□□□ -0.71
SF3A1-208ENST00000485618 INTS5Q6P9B9 1019 aaKnown RBP10.64□□□□□ -0.71
SF3A1-208ENST00000485618 NLGN1Q8N2Q7 840 aa10.64□□□□□ -0.71
SF3A1-208ENST00000485618 DBF4Q9UBU7 674 aaPredicted RBP10.64□□□□□ -0.71
SF3A1-208ENST00000485618 ZNF652Q9Y2D9 606 aa10.64□□□□□ -0.71
SF3A1-208ENST00000485618 USP16Q9Y5T5 823 aa10.64□□□□□ -0.71
SF3A1-208ENST00000485618 A1BGP04217 495 aa10.63□□□□□ -0.71
SF3A1-208ENST00000485618 TWISTNBQ3B726 338 aaPredicted RBP10.63□□□□□ -0.71
SF3A1-208ENST00000485618 KIF6Q6ZMV9 814 aa10.63□□□□□ -0.71
SF3A1-208ENST00000485618 ARHGEF1Q92888 912 aaKnown RBP10.63□□□□□ -0.71
SF3A1-208ENST00000485618 ZNF428Q96B54 188 aa10.63□□□□□ -0.71
SF3A1-208ENST00000485618 HYPKQ9NX55 129 aa10.63□□□□□ -0.71
SF3A1-208ENST00000485618 ZNF330Q9Y3S2 320 aaPredicted RBP10.63□□□□□ -0.71
SF3A1-208ENST00000485618 CICQ96RK0 1608 aaPredicted RBP10.62□□□□□ -0.71
SF3A1-208ENST00000485618 ZNF521Q96K83 1311 aa10.62□□□□□ -0.71
SF3A1-208ENST00000485618 RGL2O15211 777 aa10.62□□□□□ -0.71
SF3A1-208ENST00000485618 CT47B1P0C2W7 299 aaPredicted RBP10.62□□□□□ -0.71
SF3A1-208ENST00000485618 EIF5P55010 431 aaKnown RBP10.62□□□□□ -0.71
SF3A1-208ENST00000485618 SLFN5Q08AF3 891 aa10.62□□□□□ -0.71
SF3A1-208ENST00000485618 TSR2Q969E8 191 aaKnown RBP10.62□□□□□ -0.71
SF3A1-208ENST00000485618 DDX21Q9NR30 783 aaKnown RBP eCLIP10.62□□□□□ -0.71
SF3A1-208ENST00000485618 ZBED9Q6R2W3 1325 aa10.61□□□□□ -0.71
SF3A1-208ENST00000485618 FANCIQ9NVI1 1328 aa10.61□□□□□ -0.71
SF3A1-208ENST00000485618 ELL2O00472 640 aaPredicted RBP10.61□□□□□ -0.71
SF3A1-208ENST00000485618 DDX58O95786 925 aaKnown RBP10.61□□□□□ -0.71
SF3A1-208ENST00000485618 NARFQ9UHQ1 456 aa10.61□□□□□ -0.71
SF3A1-208ENST00000485618 ZBTB1Q9Y2K1 713 aa10.61□□□□□ -0.71
SF3A1-208ENST00000485618 UBR2Q8IWV8 1755 aa10.61□□□□□ -0.71
SF3A1-208ENST00000485618 PXDNLA1KZ92 1463 aa10.61□□□□□ -0.71
SF3A1-208ENST00000485618 KDM3BQ7LBC6 1761 aa10.6□□□□□ -0.71
SF3A1-208ENST00000485618 CAPN15O75808 1086 aa10.6□□□□□ -0.71
SF3A1-208ENST00000485618 MMP10P09238 476 aa10.6□□□□□ -0.71
SF3A1-208ENST00000485618 MYL6BP14649 208 aa10.6□□□□□ -0.71
SF3A1-208ENST00000485618 HSPA6P17066 643 aa10.6□□□□□ -0.71
SF3A1-208ENST00000485618 EXOSC9Q06265 439 aaKnown RBP10.6□□□□□ -0.71
SF3A1-208ENST00000485618 CLEC4GQ6UXB4 293 aa10.6□□□□□ -0.71
SF3A1-208ENST00000485618 DZIP3Q86Y13 1208 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 248.3 ms