RNA–Protein interactions for RNA: ENST00000477561.5

HDAC6-221, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-221ENST00000477561 NFE2L2Q16236 605 aa10.95□□□□□ -0.66
HDAC6-221ENST00000477561 GPR162Q16538 588 aa10.95□□□□□ -0.66
HDAC6-221ENST00000477561 CCDC146Q8IYE0 955 aa10.95□□□□□ -0.66
HDAC6-221ENST00000477561 NLGN1Q8N2Q7 840 aa10.95□□□□□ -0.66
HDAC6-221ENST00000477561 FMNL2Q96PY5 1086 aa10.95□□□□□ -0.66
HDAC6-221ENST00000477561 THUMPD2Q9BTF0 503 aaKnown RBP10.95□□□□□ -0.66
HDAC6-221ENST00000477561 PNNQ9H307 717 aaKnown RBP10.95□□□□□ -0.66
HDAC6-221ENST00000477561 SOS1Q07889 1333 aaPredicted RBP10.94□□□□□ -0.66
HDAC6-221ENST00000477561 PRAMEF22A3QJZ6 481 aa10.94□□□□□ -0.66
HDAC6-221ENST00000477561 STARD3NLO95772 234 aa10.94□□□□□ -0.66
HDAC6-221ENST00000477561 FKBP8Q14318 412 aa10.94□□□□□ -0.66
HDAC6-221ENST00000477561 TAF7Q15545 349 aaPredicted RBP10.94□□□□□ -0.66
HDAC6-221ENST00000477561 WWC3Q9ULE0 1092 aa10.94□□□□□ -0.66
HDAC6-221ENST00000477561 ZNF330Q9Y3S2 320 aaPredicted RBP10.94□□□□□ -0.66
HDAC6-221ENST00000477561 SIPA1L3O60292 1781 aaPredicted RBP10.94□□□□□ -0.66
HDAC6-221ENST00000477561 UTRNP46939 3433 aa10.93□□□□□ -0.66
HDAC6-221ENST00000477561 ZPR1O75312 459 aa10.93□□□□□ -0.66
HDAC6-221ENST00000477561 A1BGP04217 495 aa10.93□□□□□ -0.66
HDAC6-221ENST00000477561 RIPK4P57078 832 aa10.93□□□□□ -0.66
HDAC6-221ENST00000477561 WDR43Q15061 677 aaKnown RBP eCLIP10.93□□□□□ -0.66
HDAC6-221ENST00000477561 USPL1Q5W0Q7 1092 aa10.93□□□□□ -0.66
HDAC6-221ENST00000477561 RRP7AQ9Y3A4 280 aaKnown RBP10.93□□□□□ -0.66
HDAC6-221ENST00000477561 CD2APQ9Y5K6 639 aa10.93□□□□□ -0.66
HDAC6-221ENST00000477561 UBR2Q8IWV8 1755 aa10.93□□□□□ -0.66
HDAC6-221ENST00000477561 CICQ96RK0 1608 aaPredicted RBP10.92□□□□□ -0.66
HDAC6-221ENST00000477561 USP42Q9H9J4 1324 aaKnown RBP10.92□□□□□ -0.66
HDAC6-221ENST00000477561 YY1P25490 414 aa10.92□□□□□ -0.66
HDAC6-221ENST00000477561 PIP4K2AP48426 406 aaPredicted RBP10.92□□□□□ -0.66
HDAC6-221ENST00000477561 NEUROD2Q15784 382 aa10.92□□□□□ -0.66
HDAC6-221ENST00000477561 TEX13AQ9BXU3 409 aaPredicted RBP10.92□□□□□ -0.66
HDAC6-221ENST00000477561 ADAMTS8Q9UP79 889 aa10.92□□□□□ -0.66
HDAC6-221ENST00000477561 USP16Q9Y5T5 823 aa10.92□□□□□ -0.66
HDAC6-221ENST00000477561 PARP3Q9Y6F1 533 aa10.92□□□□□ -0.66
HDAC6-221ENST00000477561 C4AP0C0L4 1744 aa10.92□□□□□ -0.66
HDAC6-221ENST00000477561 COL15A1P39059 1388 aa10.91□□□□□ -0.66
HDAC6-221ENST00000477561 YBX3P16989 372 aaKnown RBP eCLIP10.91□□□□□ -0.66
HDAC6-221ENST00000477561 TMPOP42166 694 aaKnown RBP10.91□□□□□ -0.66
HDAC6-221ENST00000477561 NARFQ9UHQ1 456 aa10.91□□□□□ -0.66
HDAC6-221ENST00000477561 GOLGB1Q14789 3259 aaKnown RBP10.9□□□□□ -0.66
HDAC6-221ENST00000477561 DLG5Q8TDM6 1919 aa10.9□□□□□ -0.66
HDAC6-221ENST00000477561 SNRPA1P09661 255 aaKnown RBP10.9□□□□□ -0.66
HDAC6-221ENST00000477561 EIF5P55010 431 aaKnown RBP10.9□□□□□ -0.66
HDAC6-221ENST00000477561 DDR1Q08345 913 aa10.9□□□□□ -0.66
HDAC6-221ENST00000477561 CCDC184Q52MB2 194 aa10.9□□□□□ -0.66
HDAC6-221ENST00000477561 BCL2L12Q9HB09 334 aa10.9□□□□□ -0.66
HDAC6-221ENST00000477561 TBC1D2BQ9UPU7 963 aa10.9□□□□□ -0.66
HDAC6-221ENST00000477561 TM4SF1P30408 202 aa10.89□□□□□ -0.67
HDAC6-221ENST00000477561 BICDL1Q6ZP65 573 aa10.89□□□□□ -0.67
HDAC6-221ENST00000477561 RUNDC1Q96C34 613 aa10.89□□□□□ -0.67
HDAC6-221ENST00000477561 A0A087WZG4 1122 aa10.88□□□□□ -0.67
HDAC6-221ENST00000477561 A0A0G2JLW4 131 aa10.88□□□□□ -0.67
HDAC6-221ENST00000477561 POLRMTO00411 1230 aaKnown RBP10.88□□□□□ -0.67
HDAC6-221ENST00000477561 IL6STP40189 918 aaPredicted RBP10.88□□□□□ -0.67
HDAC6-221ENST00000477561 EIF4A1P60842 406 aaKnown RBP10.88□□□□□ -0.67
HDAC6-221ENST00000477561 NFIXQ14938 502 aa10.88□□□□□ -0.67
HDAC6-221ENST00000477561 NPM2Q86SE8 214 aaKnown RBP10.88□□□□□ -0.67
HDAC6-221ENST00000477561 PNISRQ8TF01 805 aaKnown RBP10.88□□□□□ -0.67
HDAC6-221ENST00000477561 TSPYL4Q9UJ04 414 aa10.88□□□□□ -0.67
HDAC6-221ENST00000477561 DPEP1P16444 411 aa10.87□□□□□ -0.67
HDAC6-221ENST00000477561 LAS1LQ9Y4W2 734 aaKnown RBP10.87□□□□□ -0.67
HDAC6-221ENST00000477561 C10orf71Q711Q0 1435 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 SENP3-EIF4A1A0A087X0R7 540 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 NBPF26B4DH59 902 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 ANP32CO43423 234 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 GRIN3BO60391 1043 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 GIGYF1O75420 1035 aaPredicted RBP10.86□□□□□ -0.67
HDAC6-221ENST00000477561 TGFB2P61812 414 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 LMOD3Q0VAK6 560 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 TBC1D9BQ66K14 1250 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 NBPF10Q6P3W6 841 aaKnown RBP10.86□□□□□ -0.67
HDAC6-221ENST00000477561 DZIP3Q86Y13 1208 aaKnown RBP10.86□□□□□ -0.67
HDAC6-221ENST00000477561 NGEFQ8N5V2 710 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 NBPF15Q8N660 670 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 TRIM35Q9UPQ4 493 aa10.86□□□□□ -0.67
HDAC6-221ENST00000477561 APAF1O14727 1248 aa10.85□□□□□ -0.67
HDAC6-221ENST00000477561 CAMTA2O94983 1202 aa10.85□□□□□ -0.67
HDAC6-221ENST00000477561 SERPINB2P05120 415 aa10.85□□□□□ -0.67
HDAC6-221ENST00000477561 CHRNA5P30532 468 aa10.85□□□□□ -0.67
HDAC6-221ENST00000477561 CCDC24Q8N4L8 307 aa10.85□□□□□ -0.67
HDAC6-221ENST00000477561 BCS1LQ9Y276 419 aa10.85□□□□□ -0.67
HDAC6-221ENST00000477561 PXDNLA1KZ92 1463 aa10.85□□□□□ -0.67
HDAC6-221ENST00000477561 KDM3BQ7LBC6 1761 aa10.84□□□□□ -0.67
HDAC6-221ENST00000477561 N4BP2Q86UW6 1770 aaPredicted RBP10.84□□□□□ -0.67
HDAC6-221ENST00000477561 MYL6BP14649 208 aa10.83□□□□□ -0.68
HDAC6-221ENST00000477561 EIF2S2P20042 333 aaKnown RBP10.83□□□□□ -0.68
HDAC6-221ENST00000477561 KCNA3P22001 575 aa10.83□□□□□ -0.68
HDAC6-221ENST00000477561 MIER1Q8N108 512 aa10.83□□□□□ -0.68
HDAC6-221ENST00000477561 NECTIN2Q92692 538 aa10.83□□□□□ -0.68
HDAC6-221ENST00000477561 KRT24Q2M2I5 525 aa10.82□□□□□ -0.68
HDAC6-221ENST00000477561 POTEDQ86YR6 584 aa10.82□□□□□ -0.68
HDAC6-221ENST00000477561 SETDB2Q96T68 719 aa10.82□□□□□ -0.68
HDAC6-221ENST00000477561 MRS2Q9HD23 443 aa10.82□□□□□ -0.68
HDAC6-221ENST00000477561 KIF13BQ9NQT8 1826 aa10.81□□□□□ -0.68
HDAC6-221ENST00000477561 KIAA1551Q9HCM1 1747 aa10.81□□□□□ -0.68
HDAC6-221ENST00000477561 CARMIL3Q8ND23 1372 aa10.81□□□□□ -0.68
HDAC6-221ENST00000477561 FAM177BA6PVY3 158 aa10.81□□□□□ -0.68
HDAC6-221ENST00000477561 CHL1O00533 1208 aa10.81□□□□□ -0.68
HDAC6-221ENST00000477561 ANXA1P04083 346 aa10.81□□□□□ -0.68
HDAC6-221ENST00000477561 HLFQ16534 295 aa10.81□□□□□ -0.68
HDAC6-221ENST00000477561 TTLL7Q6ZT98 887 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms