RNA–Protein interactions for RNA: ENST00000470531.5

CHD3-208, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 3,744 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-208ENST00000470531 NOL7Q9UMY1 257 aaKnown RBP12.77□□□□□ -0.36
CHD3-208ENST00000470531 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.77□□□□□ -0.36
CHD3-208ENST00000470531 CYP46A1Q9Y6A2 500 aa12.77□□□□□ -0.36
CHD3-208ENST00000470531 SHPRHQ149N8 1683 aa12.77□□□□□ -0.36
CHD3-208ENST00000470531 IPO4Q8TEX9 1081 aaKnown RBP12.77□□□□□ -0.37
CHD3-208ENST00000470531 RUFY2Q8WXA3 655 aa12.77□□□□□ -0.37
CHD3-208ENST00000470531 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.77□□□□□ -0.37
CHD3-208ENST00000470531 RPGRIP1LQ68CZ1 1315 aa12.77□□□□□ -0.37
CHD3-208ENST00000470531 A0A087WWV3 80 aa12.77□□□□□ -0.37
CHD3-208ENST00000470531 CCT2P78371 535 aaKnown RBP12.77□□□□□ -0.37
CHD3-208ENST00000470531 CHST3Q7LGC8 479 aa12.77□□□□□ -0.37
CHD3-208ENST00000470531 SDF4Q9BRK5 362 aa12.77□□□□□ -0.37
CHD3-208ENST00000470531 TNMDQ9H2S6 317 aa12.77□□□□□ -0.37
CHD3-208ENST00000470531 CHPF2Q9P2E5 772 aa12.77□□□□□ -0.37
CHD3-208ENST00000470531 HSP90AA4PQ58FG1 418 aa12.76□□□□□ -0.37
CHD3-208ENST00000470531 LRRC59Q96AG4 307 aaKnown RBP12.76□□□□□ -0.37
CHD3-208ENST00000470531 ZKSCAN5Q9Y2L8 839 aa12.76□□□□□ -0.37
CHD3-208ENST00000470531 EDC3Q96F86 508 aaKnown RBP12.76□□□□□ -0.37
CHD3-208ENST00000470531 AK2P54819 239 aa12.76□□□□□ -0.37
CHD3-208ENST00000470531 SLC39A6Q13433 755 aa12.76□□□□□ -0.37
CHD3-208ENST00000470531 SKIDA1Q1XH10 827 aa12.76□□□□□ -0.37
CHD3-208ENST00000470531 GNAT3A8MTJ3 354 aa12.75□□□□□ -0.37
CHD3-208ENST00000470531 ATP5J2-PTCD1G3V325 749 aa12.75□□□□□ -0.37
CHD3-208ENST00000470531 STX6O43752 255 aa12.75□□□□□ -0.37
CHD3-208ENST00000470531 PTCD1O75127 700 aaKnown RBP12.75□□□□□ -0.37
CHD3-208ENST00000470531 BTBD11A6QL63 1104 aa12.75□□□□□ -0.37
CHD3-208ENST00000470531 NBPF7P0C2Y1 421 aaPredicted RBP12.75□□□□□ -0.37
CHD3-208ENST00000470531 ZNF445P59923 1031 aa12.75□□□□□ -0.37
CHD3-208ENST00000470531 WASHC4Q2M389 1173 aa12.75□□□□□ -0.37
CHD3-208ENST00000470531 ZFP91Q96JP5 570 aaPredicted RBP12.75□□□□□ -0.37
CHD3-208ENST00000470531 BIN1O00499 593 aa12.75□□□□□ -0.37
CHD3-208ENST00000470531 HOMER1Q86YM7 354 aa12.75□□□□□ -0.37
CHD3-208ENST00000470531 ZDHHC9Q9Y397 364 aa12.75□□□□□ -0.37
CHD3-208ENST00000470531 CHMLP26374 656 aa12.74□□□□□ -0.37
CHD3-208ENST00000470531 IL16Q14005 1332 aa12.74□□□□□ -0.37
CHD3-208ENST00000470531 TTLL5Q6EMB2 1281 aa12.74□□□□□ -0.37
CHD3-208ENST00000470531 RHPN1Q8TCX5 695 aa12.74□□□□□ -0.37
CHD3-208ENST00000470531 ERCC6L2Q5T890 1561 aa12.74□□□□□ -0.37
CHD3-208ENST00000470531 SPATA32Q96LK8 384 aa12.74□□□□□ -0.37
CHD3-208ENST00000470531 SPHKAPQ2M3C7 1700 aa12.74□□□□□ -0.37
CHD3-208ENST00000470531 NEXNQ0ZGT2 675 aa12.74□□□□□ -0.37
CHD3-208ENST00000470531 EYA1Q99502 592 aa12.74□□□□□ -0.37
CHD3-208ENST00000470531 TRPM2O94759 1503 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 PPP4R3BQ5MIZ7 849 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 BLOC1S2Q6QNY1 142 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 LUZP1Q86V48 1076 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 ABCA6Q8N139 1617 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 ERICH4A6NGS2 130 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 KCNQ3O43525 872 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 ME1P48163 572 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 CCDC82Q8N4S0 544 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 GTF2E1P29083 439 aaPredicted RBP12.73□□□□□ -0.37
CHD3-208ENST00000470531 ARHGAP45Q92619 1136 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 SNRKQ9NRH2 765 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 PRDM4Q9UKN5 801 aa12.73□□□□□ -0.37
CHD3-208ENST00000470531 SYT1P21579 422 aa12.72□□□□□ -0.37
CHD3-208ENST00000470531 SMC2O95347 1197 aa12.72□□□□□ -0.37
CHD3-208ENST00000470531 CCDC192P0DO97 292 aa12.72□□□□□ -0.37
CHD3-208ENST00000470531 MCM2P49736 904 aa12.72□□□□□ -0.37
CHD3-208ENST00000470531 FKBP4Q02790 459 aaKnown RBP eCLIP12.72□□□□□ -0.37
CHD3-208ENST00000470531 HSP90AB3PQ58FF7 597 aa12.72□□□□□ -0.37
CHD3-208ENST00000470531 NUP62CLQ9H1M0 184 aa12.72□□□□□ -0.37
CHD3-208ENST00000470531 LIMCH1Q9UPQ0 1083 aa12.72□□□□□ -0.37
CHD3-208ENST00000470531 KRT85P78386 507 aa12.72□□□□□ -0.37
CHD3-208ENST00000470531 ASXL2Q76L83 1435 aa12.71□□□□□ -0.37
CHD3-208ENST00000470531 HAND2P61296 217 aa12.71□□□□□ -0.37
CHD3-208ENST00000470531 LGR6Q9HBX8 967 aa12.71□□□□□ -0.37
CHD3-208ENST00000470531 AMOTL2Q9Y2J4 779 aa12.71□□□□□ -0.37
CHD3-208ENST00000470531 MAP3K2Q9Y2U5 619 aa12.71□□□□□ -0.37
CHD3-208ENST00000470531 KIF3AQ9Y496 699 aa12.71□□□□□ -0.37
CHD3-208ENST00000470531 MAP3K19Q56UN5 1328 aa12.71□□□□□ -0.37
CHD3-208ENST00000470531 PES1O00541 588 aaKnown RBP12.71□□□□□ -0.37
CHD3-208ENST00000470531 NOLC1Q14978 699 aaKnown RBP eCLIP12.71□□□□□ -0.371e-49■■■■■ 70.7
CHD3-208ENST00000470531 MTMR7Q9Y216 660 aa12.71□□□□□ -0.37
CHD3-208ENST00000470531 PATL2C9JE40 543 aaKnown RBP12.71□□□□□ -0.38
CHD3-208ENST00000470531 ZNF500O60304 480 aaPredicted RBP12.71□□□□□ -0.38
CHD3-208ENST00000470531 DDX46Q7L014 1031 aaKnown RBP12.71□□□□□ -0.38
CHD3-208ENST00000470531 KIF1BPQ96EK5 621 aa12.71□□□□□ -0.38
CHD3-208ENST00000470531 DACT1Q9NYF0 836 aa12.71□□□□□ -0.38
CHD3-208ENST00000470531 TTC21BQ7Z4L5 1316 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 CPLX1O14810 134 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 PTGS1P23219 599 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 CCDC183Q5T5S1 534 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 CCDC186Q7Z3E2 898 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 RASEFQ8IZ41 740 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 FAM227BQ96M60 508 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 NPATQ14207 1427 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 RNF20Q5VTR2 975 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 TTC5Q8N0Z6 440 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 DNAAF4Q8WXU2 420 aa12.7□□□□□ -0.38
CHD3-208ENST00000470531 CCDC129Q6ZRS4 1044 aa12.69□□□□□ -0.38
CHD3-208ENST00000470531 PDLIM2Q96JY6 352 aa12.69□□□□□ -0.38
CHD3-208ENST00000470531 ZSCAN22P10073 491 aaPredicted RBP12.69□□□□□ -0.38
CHD3-208ENST00000470531 CCDC73Q6ZRK6 1079 aa12.69□□□□□ -0.38
CHD3-208ENST00000470531 PDCL2Q8N4E4 241 aa12.69□□□□□ -0.38
CHD3-208ENST00000470531 PDILTQ8N807 584 aa12.69□□□□□ -0.38
CHD3-208ENST00000470531 DNAJC25Q9H1X3 360 aa12.69□□□□□ -0.38
CHD3-208ENST00000470531 POLR3DP05423 398 aaPredicted RBP12.68□□□□□ -0.38
CHD3-208ENST00000470531 MAP3K11Q16584 847 aa12.68□□□□□ -0.38
CHD3-208ENST00000470531 CCDC144CPQ8IYA2 1237 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms