RNA–Protein interactions for RNA: ENST00000463631.1

HMGN1-209, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 583 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-209ENST00000463631 CYP19A1P11511 503 aaPredicted RBP23.52■■□□□ 1.36
HMGN1-209ENST00000463631 CHRNA5P30532 468 aa23.52■■□□□ 1.36
HMGN1-209ENST00000463631 KDM2BQ8NHM5 1336 aa23.52■■□□□ 1.36
HMGN1-209ENST00000463631 RNMTO43148 476 aaKnown RBP23.51■■□□□ 1.35
HMGN1-209ENST00000463631 USPL1Q5W0Q7 1092 aa23.51■■□□□ 1.35
HMGN1-209ENST00000463631 LGR6Q9HBX8 967 aa23.51■■□□□ 1.35
HMGN1-209ENST00000463631 NARFQ9UHQ1 456 aa23.51■■□□□ 1.35
HMGN1-209ENST00000463631 ZC3H4Q9UPT8 1303 aaKnown RBP23.51■■□□□ 1.35
HMGN1-209ENST00000463631 VSIG10Q8N0Z9 540 aa23.5■■□□□ 1.35
HMGN1-209ENST00000463631 RNF181Q9P0P0 153 aa23.5■■□□□ 1.35
HMGN1-209ENST00000463631 FSTL1Q12841 308 aa23.49■■□□□ 1.35
HMGN1-209ENST00000463631 NFIXQ14938 502 aa23.48■■□□□ 1.35
HMGN1-209ENST00000463631 C16orf71Q8IYS4 520 aaPredicted RBP23.48■■□□□ 1.35
HMGN1-209ENST00000463631 ZBTB1Q9Y2K1 713 aa23.48■■□□□ 1.35
HMGN1-209ENST00000463631 SLC39A6Q13433 755 aa23.47■■□□□ 1.35
HMGN1-209ENST00000463631 KIF7Q2M1P5 1343 aa23.47■■□□□ 1.35
HMGN1-209ENST00000463631 HMOX1P09601 288 aa23.46■■□□□ 1.35
HMGN1-209ENST00000463631 SCN7AQ01118 1682 aa23.45■■□□□ 1.34
HMGN1-209ENST00000463631 COL3A1P02461 1466 aaPredicted RBP23.45■■□□□ 1.34
HMGN1-209ENST00000463631 MTHFSDQ2M296 383 aaKnown RBP23.45■■□□□ 1.34
HMGN1-209ENST00000463631 BCL2L12Q9HB09 334 aa23.45■■□□□ 1.34
HMGN1-209ENST00000463631 SIPA1L3O60292 1781 aaPredicted RBP23.44■■□□□ 1.34
HMGN1-209ENST00000463631 TIAM2Q8IVF5 1701 aa23.44■■□□□ 1.34
HMGN1-209ENST00000463631 PER1O15534 1290 aaPredicted RBP23.43■■□□□ 1.34
HMGN1-209ENST00000463631 DIAPH1O60610 1272 aaKnown RBP23.43■■□□□ 1.34
HMGN1-209ENST00000463631 SERPINB2P05120 415 aa23.41■■□□□ 1.34
HMGN1-209ENST00000463631 LMNB1P20700 586 aa23.41■■□□□ 1.34
HMGN1-209ENST00000463631 KLRG1Q96E93 195 aa23.41■■□□□ 1.34
HMGN1-209ENST00000463631 ANKRD31Q8N7Z5 1873 aa23.41■■□□□ 1.34
HMGN1-209ENST00000463631 CARMIL3Q8ND23 1372 aa23.4■■□□□ 1.34
HMGN1-209ENST00000463631 NPC1L1Q9UHC9 1359 aa23.4■■□□□ 1.34
HMGN1-209ENST00000463631 EIF5P55010 431 aaKnown RBP23.4■■□□□ 1.34
HMGN1-209ENST00000463631 RASSF7Q02833 373 aa23.4■■□□□ 1.34
HMGN1-209ENST00000463631 JMYQ8N9B5 988 aa23.4■■□□□ 1.34
HMGN1-209ENST00000463631 RRAGCQ9HB90 399 aa23.4■■□□□ 1.34
HMGN1-209ENST00000463631 STARD3NLO95772 234 aa23.39■■□□□ 1.33
HMGN1-209ENST00000463631 TTLL6Q8N841 843 aa23.39■■□□□ 1.33
HMGN1-209ENST00000463631 TTC5Q8N0Z6 440 aa23.38■■□□□ 1.33
HMGN1-209ENST00000463631 SMC1BQ8NDV3 1235 aa23.38■■□□□ 1.33
HMGN1-209ENST00000463631 CCDC88AQ3V6T2 1871 aa23.37■■□□□ 1.33
HMGN1-209ENST00000463631 COL11A2P13942 1736 aaPredicted RBP23.37■■□□□ 1.33
HMGN1-209ENST00000463631 A0A087WZG4 1122 aa23.37■■□□□ 1.33
HMGN1-209ENST00000463631 PRELPP51888 382 aa23.37■■□□□ 1.33
HMGN1-209ENST00000463631 CCER1Q8TC90 406 aaPredicted RBP23.37■■□□□ 1.33
HMGN1-209ENST00000463631 HEG1Q9ULI3 1381 aa23.37■■□□□ 1.33
HMGN1-209ENST00000463631 H0YIN7 160 aa23.36■■□□□ 1.33
HMGN1-209ENST00000463631 CANXP27824 592 aaKnown RBP23.36■■□□□ 1.33
HMGN1-209ENST00000463631 C2CD5Q86YS7 1000 aa23.36■■□□□ 1.33
HMGN1-209ENST00000463631 GLTPD2A6NH11 291 aa23.35■■□□□ 1.33
HMGN1-209ENST00000463631 HTRA3P83110 453 aa23.35■■□□□ 1.33
HMGN1-209ENST00000463631 ZNF496Q96IT1 587 aaPredicted RBP23.35■■□□□ 1.33
HMGN1-209ENST00000463631 TEX13AQ9BXU3 409 aaPredicted RBP23.35■■□□□ 1.33
HMGN1-209ENST00000463631 PDZRN3Q9UPQ7 1066 aa23.35■■□□□ 1.33
HMGN1-209ENST00000463631 DICER1Q9UPY3 1922 aaKnown RBP23.34■■□□□ 1.33
HMGN1-209ENST00000463631 NFKBIEO00221 500 aa23.34■■□□□ 1.33
HMGN1-209ENST00000463631 CC2D1BQ5T0F9 858 aaKnown RBP23.34■■□□□ 1.33
HMGN1-209ENST00000463631 ZNF790Q6PG37 636 aa23.34■■□□□ 1.33
HMGN1-209ENST00000463631 GAS2L2Q8NHY3 880 aa23.34■■□□□ 1.33
HMGN1-209ENST00000463631 BCORQ6W2J9 1755 aa23.34■■□□□ 1.33
HMGN1-209ENST00000463631 FER1L6Q2WGJ9 1857 aa23.34■■□□□ 1.33
HMGN1-209ENST00000463631 PCNTO95613 3336 aa23.34■■□□□ 1.33
HMGN1-209ENST00000463631 CEMIPQ8WUJ3 1361 aa23.33■■□□□ 1.33
HMGN1-209ENST00000463631 GNAT3A8MTJ3 354 aa23.33■■□□□ 1.33
HMGN1-209ENST00000463631 VEGFAP15692 232 aaPredicted RBP23.33■■□□□ 1.33
HMGN1-209ENST00000463631 TEFQ10587 303 aa23.33■■□□□ 1.33
HMGN1-209ENST00000463631 IL6STP40189 918 aaPredicted RBP23.32■■□□□ 1.32
HMGN1-209ENST00000463631 IL17REQ8NFR9 667 aa23.32■■□□□ 1.32
HMGN1-209ENST00000463631 BRIP1Q9BX63 1249 aa23.32■■□□□ 1.32
HMGN1-209ENST00000463631 TBC1D9BQ66K14 1250 aa23.31■■□□□ 1.32
HMGN1-209ENST00000463631 ARFGEF2Q9Y6D5 1785 aa23.31■■□□□ 1.32
HMGN1-209ENST00000463631 PDE6BP35913 854 aa23.3■■□□□ 1.32
HMGN1-209ENST00000463631 BICDL1Q6ZP65 573 aa23.3■■□□□ 1.32
HMGN1-209ENST00000463631 PRR5LQ6MZQ0 368 aa23.29■■□□□ 1.32
HMGN1-209ENST00000463631 U2SURPO15042 1029 aaKnown RBP23.28■■□□□ 1.32
HMGN1-209ENST00000463631 FMNL2Q96PY5 1086 aa23.28■■□□□ 1.32
HMGN1-209ENST00000463631 LTBP3Q9NS15 1303 aa23.28■■□□□ 1.32
HMGN1-209ENST00000463631 TBC1D2BQ9UPU7 963 aa23.26■■□□□ 1.31
HMGN1-209ENST00000463631 CAMTA2O94983 1202 aa23.25■■□□□ 1.31
HMGN1-209ENST00000463631 POTECB2RU33 542 aa23.24■■□□□ 1.31
HMGN1-209ENST00000463631 CNBD1Q8NA66 436 aa23.24■■□□□ 1.31
HMGN1-209ENST00000463631 ZNF622Q969S3 477 aaKnown RBP eCLIP23.24■■□□□ 1.31
HMGN1-209ENST00000463631 DPY19L2Q6NUT2 758 aa23.23■■□□□ 1.31
HMGN1-209ENST00000463631 SETDB2Q96T68 719 aa23.23■■□□□ 1.31
HMGN1-209ENST00000463631 ZNF330Q9Y3S2 320 aaPredicted RBP23.23■■□□□ 1.31
HMGN1-209ENST00000463631 SLX4Q8IY92 1834 aa23.23■■□□□ 1.31
HMGN1-209ENST00000463631 CACNA1SQ13698 1873 aa23.23■■□□□ 1.31
HMGN1-209ENST00000463631 C21orf2O43822 256 aa23.22■■□□□ 1.31
HMGN1-209ENST00000463631 COL13A1Q5TAT6 717 aaPredicted RBP23.22■■□□□ 1.31
HMGN1-209ENST00000463631 STYK1Q6J9G0 422 aa23.22■■□□□ 1.31
HMGN1-209ENST00000463631 NPM2Q86SE8 214 aaKnown RBP23.22■■□□□ 1.31
HMGN1-209ENST00000463631 A1BGP04217 495 aa23.21■■□□□ 1.31
HMGN1-209ENST00000463631 ERFEQ4G0M1 354 aa23.21■■□□□ 1.31
HMGN1-209ENST00000463631 CNKSR1Q969H4 720 aa23.21■■□□□ 1.31
HMGN1-209ENST00000463631 PHACTR3Q96KR7 559 aa23.21■■□□□ 1.31
HMGN1-209ENST00000463631 RSPH6AQ9H0K4 717 aa23.21■■□□□ 1.31
HMGN1-209ENST00000463631 TAOK3Q9H2K8 898 aa23.21■■□□□ 1.31
HMGN1-209ENST00000463631 BTBD11A6QL63 1104 aa23.2■■□□□ 1.3
HMGN1-209ENST00000463631 SRGNP10124 158 aa23.2■■□□□ 1.3
HMGN1-209ENST00000463631 ST5P78524 1137 aa23.2■■□□□ 1.3
HMGN1-209ENST00000463631 SOGA3Q5TF21 947 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms