RNA–Protein interactions for RNA: ENST00000459667.1

VARS-218, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 793 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-218ENST00000459667 ZBTB1Q9Y2K1 713 aa27.32■■□□□ 1.96
VARS-218ENST00000459667 RRP7AQ9Y3A4 280 aaKnown RBP27.32■■□□□ 1.96
VARS-218ENST00000459667 KDM3BQ7LBC6 1761 aa27.31■■□□□ 1.96
VARS-218ENST00000459667 LMOD3Q0VAK6 560 aa27.31■■□□□ 1.96
VARS-218ENST00000459667 CCDC184Q52MB2 194 aa27.31■■□□□ 1.96
VARS-218ENST00000459667 PNISRQ8TF01 805 aaKnown RBP27.31■■□□□ 1.96
VARS-218ENST00000459667 SOS1Q07889 1333 aaPredicted RBP27.31■■□□□ 1.96
VARS-218ENST00000459667 MIS18AQ9NYP9 233 aa27.3■■□□□ 1.96
VARS-218ENST00000459667 NEUROD2Q15784 382 aa27.29■■□□□ 1.96
VARS-218ENST00000459667 COL15A1P39059 1388 aa27.28■■□□□ 1.96
VARS-218ENST00000459667 USP42Q9H9J4 1324 aaKnown RBP27.28■■□□□ 1.96
VARS-218ENST00000459667 GYS1P13807 737 aa27.27■■□□□ 1.96
VARS-218ENST00000459667 CANXP27824 592 aaKnown RBP27.27■■□□□ 1.96
VARS-218ENST00000459667 NLGN1Q8N2Q7 840 aa27.27■■□□□ 1.96
VARS-218ENST00000459667 SRP68Q9UHB9 627 aaKnown RBP27.27■■□□□ 1.96
VARS-218ENST00000459667 SNRPA1P09661 255 aaKnown RBP27.26■■□□□ 1.95
VARS-218ENST00000459667 MRS2Q9HD23 443 aa27.25■■□□□ 1.95
VARS-218ENST00000459667 PRAMEF22A3QJZ6 481 aa27.24■■□□□ 1.95
VARS-218ENST00000459667 MMP10P09238 476 aa27.24■■□□□ 1.95
VARS-218ENST00000459667 USP16Q9Y5T5 823 aa27.24■■□□□ 1.95
VARS-218ENST00000459667 ZPR1O75312 459 aa27.23■■□□□ 1.95
VARS-218ENST00000459667 LAMB4A4D0S4 1761 aa27.22■■□□□ 1.95
VARS-218ENST00000459667 TRIM35Q9UPQ4 493 aa27.22■■□□□ 1.95
VARS-218ENST00000459667 DCAF8L1A6NGE4 600 aa27.21■■□□□ 1.95
VARS-218ENST00000459667 A1BGP04217 495 aa27.21■■□□□ 1.95
VARS-218ENST00000459667 EIF5P55010 431 aaKnown RBP27.21■■□□□ 1.95
VARS-218ENST00000459667 USPL1Q5W0Q7 1092 aa27.21■■□□□ 1.95
VARS-218ENST00000459667 TSPYL4Q9UJ04 414 aa27.21■■□□□ 1.95
VARS-218ENST00000459667 IL6STP40189 918 aaPredicted RBP27.2■■□□□ 1.94
VARS-218ENST00000459667 EIF4A1P60842 406 aaKnown RBP27.2■■□□□ 1.94
VARS-218ENST00000459667 NLGN2Q8NFZ4 835 aa27.2■■□□□ 1.94
VARS-218ENST00000459667 NARFQ9UHQ1 456 aa27.2■■□□□ 1.94
VARS-218ENST00000459667 ZNF330Q9Y3S2 320 aaPredicted RBP27.2■■□□□ 1.94
VARS-218ENST00000459667 A0A087WZG4 1122 aa27.19■■□□□ 1.94
VARS-218ENST00000459667 APAF1O14727 1248 aa27.19■■□□□ 1.94
VARS-218ENST00000459667 FKBP8Q14318 412 aa27.19■■□□□ 1.94
VARS-218ENST00000459667 CD2APQ9Y5K6 639 aa27.19■■□□□ 1.94
VARS-218ENST00000459667 BABAM1Q9NWV8 329 aa27.18■■□□□ 1.94
VARS-218ENST00000459667 NPM2Q86SE8 214 aaKnown RBP27.17■■□□□ 1.94
VARS-218ENST00000459667 PIP4K2AP48426 406 aaPredicted RBP27.16■■□□□ 1.94
VARS-218ENST00000459667 PARP3Q9Y6F1 533 aa27.16■■□□□ 1.94
VARS-218ENST00000459667 SCN7AQ01118 1682 aa27.15■■□□□ 1.94
VARS-218ENST00000459667 GIGYF1O75420 1035 aaPredicted RBP27.15■■□□□ 1.94
VARS-218ENST00000459667 BCL2L12Q9HB09 334 aa27.13■■□□□ 1.93
VARS-218ENST00000459667 LAS1LQ9Y4W2 734 aaKnown RBP27.13■■□□□ 1.93
VARS-218ENST00000459667 KIF13BQ9NQT8 1826 aa27.12■■□□□ 1.93
VARS-218ENST00000459667 DDR1Q08345 913 aa27.12■■□□□ 1.93
VARS-218ENST00000459667 TBC1D2BQ9UPU7 963 aa27.12■■□□□ 1.93
VARS-218ENST00000459667 C10orf71Q711Q0 1435 aa27.11■■□□□ 1.93
VARS-218ENST00000459667 NBPF26B4DH59 902 aa27.11■■□□□ 1.93
VARS-218ENST00000459667 CHL1O00533 1208 aa27.11■■□□□ 1.93
VARS-218ENST00000459667 NBPF10Q6P3W6 841 aaKnown RBP27.11■■□□□ 1.93
VARS-218ENST00000459667 NBPF15Q8N660 670 aa27.11■■□□□ 1.93
VARS-218ENST00000459667 BCORQ6W2J9 1755 aa27.1■■□□□ 1.93
VARS-218ENST00000459667 TM4SF1P30408 202 aa27.1■■□□□ 1.93
VARS-218ENST00000459667 DZIP3Q86Y13 1208 aaKnown RBP27.1■■□□□ 1.93
VARS-218ENST00000459667 POLRMTO00411 1230 aaKnown RBP27.09■■□□□ 1.93
VARS-218ENST00000459667 NFIXQ14938 502 aa27.09■■□□□ 1.93
VARS-218ENST00000459667 PELP1Q8IZL8 1130 aaKnown RBP27.09■■□□□ 1.93
VARS-218ENST00000459667 GPR162Q16538 588 aa27.08■■□□□ 1.93
VARS-218ENST00000459667 CAMTA2O94983 1202 aa27.07■■□□□ 1.92
VARS-218ENST00000459667 CFAP44Q96MT7 982 aa27.07■■□□□ 1.92
VARS-218ENST00000459667 CALD1Q05682 793 aaKnown RBP27.06■■□□□ 1.92
VARS-218ENST00000459667 KIAA1551Q9HCM1 1747 aa27.05■■□□□ 1.92
VARS-218ENST00000459667 AFDNP55196 1824 aaKnown RBP27.05■■□□□ 1.92
VARS-218ENST00000459667 BICDL1Q6ZP65 573 aa27.05■■□□□ 1.92
VARS-218ENST00000459667 SENP3-EIF4A1A0A087X0R7 540 aa27.04■■□□□ 1.92
VARS-218ENST00000459667 TBC1D9BQ66K14 1250 aa27.04■■□□□ 1.92
VARS-218ENST00000459667 PXDNLA1KZ92 1463 aa27.04■■□□□ 1.92
VARS-218ENST00000459667 NRXN2Q9P2S2 1712 aa27.04■■□□□ 1.92
VARS-218ENST00000459667 ERBB4Q15303 1308 aa27.03■■□□□ 1.92
VARS-218ENST00000459667 N4BP2Q86UW6 1770 aaPredicted RBP27.02■■□□□ 1.92
VARS-218ENST00000459667 EIF2S2P20042 333 aaKnown RBP27.02■■□□□ 1.92
VARS-218ENST00000459667 TGFB2P61812 414 aa27.02■■□□□ 1.92
VARS-218ENST00000459667 FAM9BQ8IZU0 186 aa27.02■■□□□ 1.92
VARS-218ENST00000459667 MBIPQ9NS73 344 aa27.02■■□□□ 1.92
VARS-218ENST00000459667 IFT57Q9NWB7 429 aa27.02■■□□□ 1.92
VARS-218ENST00000459667 SERPINB2P05120 415 aa27.01■■□□□ 1.91
VARS-218ENST00000459667 ZNF853P0CG23 659 aa27.01■■□□□ 1.91
VARS-218ENST00000459667 MYL6BP14649 208 aa27.01■■□□□ 1.91
VARS-218ENST00000459667 GNAI1P63096 354 aa27.01■■□□□ 1.91
VARS-218ENST00000459667 KRT24Q2M2I5 525 aa27.01■■□□□ 1.91
VARS-218ENST00000459667 NGEFQ8N5V2 710 aa27.01■■□□□ 1.91
VARS-218ENST00000459667 YBX3P16989 372 aaKnown RBP eCLIP27■■□□□ 1.911e-21■□□□□ 8.4
VARS-218ENST00000459667 CCDC27Q2M243 656 aa27■■□□□ 1.91
VARS-218ENST00000459667 ZNF652Q9Y2D9 606 aa27■■□□□ 1.91
VARS-218ENST00000459667 CARMIL3Q8ND23 1372 aa26.99■■□□□ 1.91
VARS-218ENST00000459667 CLEC4GQ6UXB4 293 aa26.99■■□□□ 1.91
VARS-218ENST00000459667 WWC3Q9ULE0 1092 aa26.99■■□□□ 1.91
VARS-218ENST00000459667 A0A0G2JLW4 131 aa26.97■■□□□ 1.91
VARS-218ENST00000459667 RGL2O15211 777 aa26.97■■□□□ 1.91
VARS-218ENST00000459667 NECTIN2Q92692 538 aa26.97■■□□□ 1.91
VARS-218ENST00000459667 SETDB2Q96T68 719 aa26.97■■□□□ 1.91
VARS-218ENST00000459667 HOXB7P09629 217 aa26.96■■□□□ 1.91
VARS-218ENST00000459667 DPEP1P16444 411 aa26.96■■□□□ 1.91
VARS-218ENST00000459667 NCBP3Q53F19 620 aaKnown RBP26.96■■□□□ 1.91
VARS-218ENST00000459667 WWC1Q8IX03 1113 aa26.96■■□□□ 1.91
VARS-218ENST00000459667 GRIN3BO60391 1043 aa26.95■■□□□ 1.9
VARS-218ENST00000459667 PDIA6Q15084 440 aa26.95■■□□□ 1.9
VARS-218ENST00000459667 KIF6Q6ZMV9 814 aa26.95■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 1352.1 ms