RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 ADAMTS8Q9UP79 889 aa24.64■■□□□ 1.54
USP39-209ENST00000458268 ZBTB1Q9Y2K1 713 aa24.64■■□□□ 1.54
USP39-209ENST00000458268 STARD3NLO95772 234 aa24.62■■□□□ 1.53
USP39-209ENST00000458268 ADRA2BP18089 450 aa24.62■■□□□ 1.53
USP39-209ENST00000458268 TAF7Q15545 349 aaPredicted RBP24.62■■□□□ 1.53
USP39-209ENST00000458268 VSIG10Q8N0Z9 540 aa24.62■■□□□ 1.53
USP39-209ENST00000458268 RUNDC1Q96C34 613 aa24.61■■□□□ 1.53
USP39-209ENST00000458268 MMP10P09238 476 aa24.6■■□□□ 1.53
USP39-209ENST00000458268 TMPOP42166 694 aaKnown RBP24.6■■□□□ 1.53
USP39-209ENST00000458268 CCDC184Q52MB2 194 aa24.59■■□□□ 1.53
USP39-209ENST00000458268 NLGN2Q8NFZ4 835 aa24.59■■□□□ 1.53
USP39-209ENST00000458268 SOS1Q07889 1333 aaPredicted RBP24.59■■□□□ 1.53
USP39-209ENST00000458268 COL15A1P39059 1388 aa24.58■■□□□ 1.53
USP39-209ENST00000458268 PRAMEF22A3QJZ6 481 aa24.58■■□□□ 1.53
USP39-209ENST00000458268 ZPR1O75312 459 aa24.58■■□□□ 1.53
USP39-209ENST00000458268 GYS1P13807 737 aa24.58■■□□□ 1.53
USP39-209ENST00000458268 KDM3BQ7LBC6 1761 aa24.57■■□□□ 1.52
USP39-209ENST00000458268 PIP4K2AP48426 406 aaPredicted RBP24.57■■□□□ 1.52
USP39-209ENST00000458268 TEX13AQ9BXU3 409 aaPredicted RBP24.57■■□□□ 1.52
USP39-209ENST00000458268 SENP3-EIF4A1A0A087X0R7 540 aa24.56■■□□□ 1.52
USP39-209ENST00000458268 A1BGP04217 495 aa24.56■■□□□ 1.52
USP39-209ENST00000458268 LMOD3Q0VAK6 560 aa24.56■■□□□ 1.52
USP39-209ENST00000458268 USPL1Q5W0Q7 1092 aa24.56■■□□□ 1.52
USP39-209ENST00000458268 NPM2Q86SE8 214 aaKnown RBP24.56■■□□□ 1.52
USP39-209ENST00000458268 NLGN1Q8N2Q7 840 aa24.56■■□□□ 1.52
USP39-209ENST00000458268 WWC3Q9ULE0 1092 aa24.56■■□□□ 1.52
USP39-209ENST00000458268 USP42Q9H9J4 1324 aaKnown RBP24.56■■□□□ 1.52
USP39-209ENST00000458268 PNISRQ8TF01 805 aaKnown RBP24.55■■□□□ 1.52
USP39-209ENST00000458268 MRS2Q9HD23 443 aa24.55■■□□□ 1.52
USP39-209ENST00000458268 LAS1LQ9Y4W2 734 aaKnown RBP24.55■■□□□ 1.52
USP39-209ENST00000458268 SNRPA1P09661 255 aaKnown RBP24.54■■□□□ 1.52
USP39-209ENST00000458268 GPR162Q16538 588 aa24.54■■□□□ 1.52
USP39-209ENST00000458268 USP16Q9Y5T5 823 aa24.54■■□□□ 1.52
USP39-209ENST00000458268 PARP3Q9Y6F1 533 aa24.54■■□□□ 1.52
USP39-209ENST00000458268 FKBP8Q14318 412 aa24.53■■□□□ 1.52
USP39-209ENST00000458268 TSPYL4Q9UJ04 414 aa24.53■■□□□ 1.52
USP39-209ENST00000458268 LAMB4A4D0S4 1761 aa24.52■■□□□ 1.52
USP39-209ENST00000458268 BICDL1Q6ZP65 573 aa24.5■■□□□ 1.51
USP39-209ENST00000458268 TBC1D2BQ9UPU7 963 aa24.5■■□□□ 1.51
USP39-209ENST00000458268 APAF1O14727 1248 aa24.49■■□□□ 1.51
USP39-209ENST00000458268 NARFQ9UHQ1 456 aa24.49■■□□□ 1.51
USP39-209ENST00000458268 CD2APQ9Y5K6 639 aa24.49■■□□□ 1.51
USP39-209ENST00000458268 A0A087WZG4 1122 aa24.48■■□□□ 1.51
USP39-209ENST00000458268 EIF5P55010 431 aaKnown RBP24.47■■□□□ 1.51
USP39-209ENST00000458268 EIF4A1P60842 406 aaKnown RBP24.47■■□□□ 1.51
USP39-209ENST00000458268 IL6STP40189 918 aaPredicted RBP24.46■■□□□ 1.51
USP39-209ENST00000458268 NGEFQ8N5V2 710 aa24.46■■□□□ 1.51
USP39-209ENST00000458268 TRIM35Q9UPQ4 493 aa24.46■■□□□ 1.51
USP39-209ENST00000458268 N4BP2Q86UW6 1770 aaPredicted RBP24.46■■□□□ 1.51
USP39-209ENST00000458268 DDR1Q08345 913 aa24.45■■□□□ 1.5
USP39-209ENST00000458268 SCN7AQ01118 1682 aa24.45■■□□□ 1.5
USP39-209ENST00000458268 DZIP3Q86Y13 1208 aaKnown RBP24.44■■□□□ 1.5
USP39-209ENST00000458268 BCL2L12Q9HB09 334 aa24.43■■□□□ 1.5
USP39-209ENST00000458268 AFDNP55196 1824 aaKnown RBP24.42■■□□□ 1.5
USP39-209ENST00000458268 GIGYF1O75420 1035 aaPredicted RBP24.42■■□□□ 1.5
USP39-209ENST00000458268 EIF2S2P20042 333 aaKnown RBP24.42■■□□□ 1.5
USP39-209ENST00000458268 NFIXQ14938 502 aa24.42■■□□□ 1.5
USP39-209ENST00000458268 MYL6BP14649 208 aa24.41■■□□□ 1.5
USP39-209ENST00000458268 NECTIN2Q92692 538 aa24.41■■□□□ 1.5
USP39-209ENST00000458268 C10orf71Q711Q0 1435 aa24.41■■□□□ 1.5
USP39-209ENST00000458268 BCORQ6W2J9 1755 aa24.41■■□□□ 1.5
USP39-209ENST00000458268 KIF13BQ9NQT8 1826 aa24.4■■□□□ 1.5
USP39-209ENST00000458268 NBPF26B4DH59 902 aa24.4■■□□□ 1.5
USP39-209ENST00000458268 POLRMTO00411 1230 aaKnown RBP24.4■■□□□ 1.5
USP39-209ENST00000458268 NBPF10Q6P3W6 841 aaKnown RBP24.4■■□□□ 1.5
USP39-209ENST00000458268 NBPF15Q8N660 670 aa24.4■■□□□ 1.5
USP39-209ENST00000458268 YBX3P16989 372 aaKnown RBP eCLIP24.39■■□□□ 1.49
USP39-209ENST00000458268 YY1P25490 414 aa24.39■■□□□ 1.49
USP39-209ENST00000458268 TBC1D9BQ66K14 1250 aa24.39■■□□□ 1.49
USP39-209ENST00000458268 FAM9BQ8IZU0 186 aa24.39■■□□□ 1.49
USP39-209ENST00000458268 A0A0G2JLW4 131 aa24.38■■□□□ 1.49
USP39-209ENST00000458268 NPHP1O15259 732 aa24.38■■□□□ 1.49
USP39-209ENST00000458268 TM4SF1P30408 202 aa24.38■■□□□ 1.49
USP39-209ENST00000458268 KRT24Q2M2I5 525 aa24.38■■□□□ 1.49
USP39-209ENST00000458268 SALL2Q9Y467 1007 aaPredicted RBP24.38■■□□□ 1.49
USP39-209ENST00000458268 CAMTA2O94983 1202 aa24.37■■□□□ 1.49
USP39-209ENST00000458268 SERPINB2P05120 415 aa24.37■■□□□ 1.49
USP39-209ENST00000458268 PXDNLA1KZ92 1463 aa24.37■■□□□ 1.49
USP39-209ENST00000458268 CHD4Q14839 1912 aa24.37■■□□□ 1.49
USP39-209ENST00000458268 KIAA1551Q9HCM1 1747 aa24.36■■□□□ 1.49
USP39-209ENST00000458268 DPEP1P16444 411 aa24.35■■□□□ 1.49
USP39-209ENST00000458268 CCDC24Q8N4L8 307 aa24.35■■□□□ 1.49
USP39-209ENST00000458268 BABAM1Q9NWV8 329 aa24.35■■□□□ 1.49
USP39-209ENST00000458268 CHL1O00533 1208 aa24.34■■□□□ 1.49
USP39-209ENST00000458268 FAM177BA6PVY3 158 aa24.33■■□□□ 1.49
USP39-209ENST00000458268 ANXA1P04083 346 aa24.33■■□□□ 1.49
USP39-209ENST00000458268 SETDB2Q96T68 719 aa24.33■■□□□ 1.49
USP39-209ENST00000458268 BCS1LQ9Y276 419 aa24.33■■□□□ 1.49
USP39-209ENST00000458268 ZNF652Q9Y2D9 606 aa24.33■■□□□ 1.49
USP39-209ENST00000458268 CHRNA5P30532 468 aa24.32■■□□□ 1.48
USP39-209ENST00000458268 TGFB2P61812 414 aa24.32■■□□□ 1.48
USP39-209ENST00000458268 CALD1Q05682 793 aaKnown RBP24.32■■□□□ 1.48
USP39-209ENST00000458268 KIF6Q6ZMV9 814 aa24.32■■□□□ 1.48
USP39-209ENST00000458268 MBIPQ9NS73 344 aa24.32■■□□□ 1.48
USP39-209ENST00000458268 CARMIL3Q8ND23 1372 aa24.31■■□□□ 1.48
USP39-209ENST00000458268 GRIN3BO60391 1043 aa24.31■■□□□ 1.48
USP39-209ENST00000458268 TTLL7Q6ZT98 887 aa24.31■■□□□ 1.48
USP39-209ENST00000458268 CFAP44Q96MT7 982 aa24.31■■□□□ 1.48
USP39-209ENST00000458268 ZBTB3Q9H5J0 574 aa24.31■■□□□ 1.48
USP39-209ENST00000458268 NRXN2Q9P2S2 1712 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms