RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 FRAT1Q92837 279 aaPredicted RBP24.63■■□□□ 1.53
RPS28-202ENST00000449223 BCL11BQ9C0K0 894 aaPredicted RBP24.63■■□□□ 1.53
RPS28-202ENST00000449223 USP16Q9Y5T5 823 aa24.63■■□□□ 1.53
RPS28-202ENST00000449223 TCERG1O14776 1098 aaKnown RBP24.62■■□□□ 1.53
RPS28-202ENST00000449223 MS4A1P11836 297 aa24.62■■□□□ 1.53
RPS28-202ENST00000449223 TRIM27P14373 513 aa24.61■■□□□ 1.53
RPS28-202ENST00000449223 CANXP27824 592 aaKnown RBP24.61■■□□□ 1.53
RPS28-202ENST00000449223 ERICH6BQ5W0A0 696 aa24.61■■□□□ 1.53
RPS28-202ENST00000449223 SLC4A9Q96Q91 983 aa24.61■■□□□ 1.53
RPS28-202ENST00000449223 DDX21Q9NR30 783 aaKnown RBP eCLIP24.61■■□□□ 1.53
RPS28-202ENST00000449223 CHPF2Q9P2E5 772 aa24.61■■□□□ 1.53
RPS28-202ENST00000449223 PDIA6Q15084 440 aa24.61■■□□□ 1.53
RPS28-202ENST00000449223 COL5A3P25940 1745 aaPredicted RBP24.6■■□□□ 1.53
RPS28-202ENST00000449223 RREB1Q92766 1687 aa24.59■■□□□ 1.53
RPS28-202ENST00000449223 FLIIQ13045 1269 aa24.59■■□□□ 1.53
RPS28-202ENST00000449223 C20orf194Q5TEA3 1177 aa24.59■■□□□ 1.53
RPS28-202ENST00000449223 PTF1AQ7RTS3 328 aa24.59■■□□□ 1.53
RPS28-202ENST00000449223 NECTIN2Q92692 538 aa24.59■■□□□ 1.53
RPS28-202ENST00000449223 API5Q9BZZ5 524 aaKnown RBP24.59■■□□□ 1.53
RPS28-202ENST00000449223 HYPKQ9NX55 129 aa24.59■■□□□ 1.53
RPS28-202ENST00000449223 N4BP2Q86UW6 1770 aaPredicted RBP24.58■■□□□ 1.53
RPS28-202ENST00000449223 LOC102724428A0A0B4J2F2 783 aa24.58■■□□□ 1.53
RPS28-202ENST00000449223 SIK1P57059 783 aa24.58■■□□□ 1.53
RPS28-202ENST00000449223 LRP10Q7Z4F1 713 aa24.58■■□□□ 1.53
RPS28-202ENST00000449223 RBM42Q9BTD8 480 aaKnown RBP24.58■■□□□ 1.53
RPS28-202ENST00000449223 ABCC4O15439 1325 aa24.57■■□□□ 1.52
RPS28-202ENST00000449223 FKBP8Q14318 412 aa24.56■■□□□ 1.52
RPS28-202ENST00000449223 G2E3Q7L622 706 aa24.56■■□□□ 1.52
RPS28-202ENST00000449223 DZIP1LQ8IYY4 767 aaKnown RBP24.56■■□□□ 1.52
RPS28-202ENST00000449223 GTF3C3Q9Y5Q9 886 aa24.56■■□□□ 1.52
RPS28-202ENST00000449223 STARD3NLO95772 234 aa24.56■■□□□ 1.52
RPS28-202ENST00000449223 DNAJC10Q8IXB1 793 aa24.56■■□□□ 1.52
RPS28-202ENST00000449223 RLBP1P12271 317 aa24.55■■□□□ 1.52
RPS28-202ENST00000449223 IRX6P78412 446 aaPredicted RBP24.55■■□□□ 1.52
RPS28-202ENST00000449223 PROSER3Q2NL68 480 aa24.55■■□□□ 1.52
RPS28-202ENST00000449223 PXDNLA1KZ92 1463 aa24.54■■□□□ 1.52
RPS28-202ENST00000449223 CYP19A1P11511 503 aaPredicted RBP24.54■■□□□ 1.52
RPS28-202ENST00000449223 FTSJ3Q8IY81 847 aaKnown RBP24.53■■□□□ 1.52
RPS28-202ENST00000449223 PHAXQ9H814 394 aaKnown RBP24.53■■□□□ 1.52
RPS28-202ENST00000449223 TNNQ9UQP3 1299 aa24.53■■□□□ 1.52
RPS28-202ENST00000449223 TNS1Q9HBL0 1735 aaKnown RBP24.53■■□□□ 1.52
RPS28-202ENST00000449223 NBPF26B4DH59 902 aa24.52■■□□□ 1.52
RPS28-202ENST00000449223 NBPF14Q5TI25 921 aa24.52■■□□□ 1.52
RPS28-202ENST00000449223 NBPF10Q6P3W6 841 aaKnown RBP24.52■■□□□ 1.52
RPS28-202ENST00000449223 NBPF15Q8N660 670 aa24.52■■□□□ 1.52
RPS28-202ENST00000449223 PANK1Q8TE04 598 aa24.52■■□□□ 1.52
RPS28-202ENST00000449223 RGPD3A6NKT7 1758 aaPredicted RBP24.52■■□□□ 1.52
RPS28-202ENST00000449223 RGPD4Q7Z3J3 1758 aa24.52■■□□□ 1.52
RPS28-202ENST00000449223 TAF1LQ8IZX4 1826 aa24.52■■□□□ 1.52
RPS28-202ENST00000449223 ATP6V1AP38606 617 aa24.51■■□□□ 1.51
RPS28-202ENST00000449223 ANXA1P04083 346 aa24.51■■□□□ 1.51
RPS28-202ENST00000449223 FKBP5Q13451 457 aaPredicted RBP24.51■■□□□ 1.51
RPS28-202ENST00000449223 CLUAP1Q96AJ1 413 aa24.51■■□□□ 1.51
RPS28-202ENST00000449223 TRIM37O94972 964 aa24.5■■□□□ 1.51
RPS28-202ENST00000449223 ITPK1Q13572 414 aa24.5■■□□□ 1.51
RPS28-202ENST00000449223 MVPQ14764 893 aaKnown RBP24.5■■□□□ 1.51
RPS28-202ENST00000449223 CRBNQ96SW2 442 aa24.5■■□□□ 1.51
RPS28-202ENST00000449223 MYH14Q7Z406 1995 aaKnown RBP24.49■■□□□ 1.51
RPS28-202ENST00000449223 A1BGP04217 495 aa24.49■■□□□ 1.51
RPS28-202ENST00000449223 INTS3Q68E01 1043 aaKnown RBP24.49■■□□□ 1.51
RPS28-202ENST00000449223 AAMPQ13685 434 aa24.47■■□□□ 1.51
RPS28-202ENST00000449223 TMEM57Q8N5G2 664 aa24.47■■□□□ 1.51
RPS28-202ENST00000449223 COG6Q9Y2V7 657 aa24.47■■□□□ 1.51
RPS28-202ENST00000449223 ADCY9O60503 1353 aa24.47■■□□□ 1.51
RPS28-202ENST00000449223 NUP188Q5SRE5 1749 aa24.47■■□□□ 1.51
RPS28-202ENST00000449223 MYL6BP14649 208 aa24.46■■□□□ 1.51
RPS28-202ENST00000449223 EXOC6Q8TAG9 804 aa24.46■■□□□ 1.51
RPS28-202ENST00000449223 ATP10DQ9P241 1426 aa24.46■■□□□ 1.51
RPS28-202ENST00000449223 PLSCR1O15162 318 aa24.45■■□□□ 1.51
RPS28-202ENST00000449223 DDX58O95786 925 aaKnown RBP24.45■■□□□ 1.51
RPS28-202ENST00000449223 ARFGEF2Q9Y6D5 1785 aa24.45■■□□□ 1.51
RPS28-202ENST00000449223 IBTKQ9P2D0 1353 aaPredicted RBP24.45■■□□□ 1.5
RPS28-202ENST00000449223 CNTNAP4Q9C0A0 1308 aa24.45■■□□□ 1.5
RPS28-202ENST00000449223 IL6STP40189 918 aaPredicted RBP24.45■■□□□ 1.5
RPS28-202ENST00000449223 KSR2Q6VAB6 950 aa24.45■■□□□ 1.5
RPS28-202ENST00000449223 XAGE3Q8WTP9 111 aa24.45■■□□□ 1.5
RPS28-202ENST00000449223 CCDC87Q9NVE4 849 aa24.45■■□□□ 1.5
RPS28-202ENST00000449223 DDX19BQ9UMR2 479 aa24.45■■□□□ 1.5
RPS28-202ENST00000449223 PI4KAP2A4QPH2 592 aa24.44■■□□□ 1.5
RPS28-202ENST00000449223 CRKLP46109 303 aaKnown RBP24.44■■□□□ 1.5
RPS28-202ENST00000449223 SLC27A3Q5K4L6 730 aa24.44■■□□□ 1.5
RPS28-202ENST00000449223 INTS5Q6P9B9 1019 aaKnown RBP24.44■■□□□ 1.5
RPS28-202ENST00000449223 COPS6Q7L5N1 327 aa24.44■■□□□ 1.5
RPS28-202ENST00000449223 PI4KAP1Q8N8J0 262 aa24.44■■□□□ 1.5
RPS28-202ENST00000449223 CCNL1Q9UK58 526 aaPredicted RBP24.44■■□□□ 1.5
RPS28-202ENST00000449223 ZBTB1Q9Y2K1 713 aa24.44■■□□□ 1.5
RPS28-202ENST00000449223 PIP4K2AP48426 406 aaPredicted RBP24.43■■□□□ 1.5
RPS28-202ENST00000449223 CCT4P50991 539 aaKnown RBP24.43■■□□□ 1.5
RPS28-202ENST00000449223 RC3H1Q5TC82 1133 aaKnown RBP24.43■■□□□ 1.5
RPS28-202ENST00000449223 DNAAF4Q8WXU2 420 aa24.43■■□□□ 1.5
RPS28-202ENST00000449223 C4BP0C0L5 1744 aa24.42■■□□□ 1.5
RPS28-202ENST00000449223 F6X3S4 739 aa24.42■■□□□ 1.5
RPS28-202ENST00000449223 HMGB2P26583 209 aaKnown RBP24.42■■□□□ 1.5
RPS28-202ENST00000449223 LINC00116Q8NCU8 138 aa24.42■■□□□ 1.5
RPS28-202ENST00000449223 ITPRIPQ8IWB1 547 aa24.41■■□□□ 1.5
RPS28-202ENST00000449223 EIF5P55010 431 aaKnown RBP24.4■■□□□ 1.5
RPS28-202ENST00000449223 ANKRD13DQ6ZTN6 518 aa24.4■■□□□ 1.5
RPS28-202ENST00000449223 PLBD2Q8NHP8 589 aa24.4■■□□□ 1.5
RPS28-202ENST00000449223 CHMP4BQ9H444 224 aaKnown RBP24.4■■□□□ 1.5
RPS28-202ENST00000449223 AIMP1Q12904 312 aaKnown RBP24.39■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 145.3 ms