RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 TRIM27P14373 513 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 CLCN1P35523 988 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 BMS1Q14692 1282 aaKnown RBP9.03□□□□□ -0.96
NEDD9-204ENST00000448183 STX1AQ16623 288 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 SMARCC1Q92922 1105 aaPredicted RBP9.03□□□□□ -0.96
NEDD9-204ENST00000448183 AKAP2Q9Y2D5 859 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 CCDC61Q9Y6R9 512 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 SNAPC4Q5SXM2 1469 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 GTF2F1P35269 517 aaKnown RBP eCLIP9.03□□□□□ -0.967e-8■■■□□ 19.1
NEDD9-204ENST00000448183 MICALCLQ6ZW33 695 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 CACNA2D4Q7Z3S7 1137 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 VPS36Q86VN1 386 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 PROSER2Q86WR7 435 aaPredicted RBP9.03□□□□□ -0.96
NEDD9-204ENST00000448183 STRN4Q9NRL3 753 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 UBE2HP62256 183 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 LARP1Q6PKG0 1096 aaKnown RBP9.03□□□□□ -0.96
NEDD9-204ENST00000448183 MCM10Q7L590 875 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 CNNM3Q8NE01 707 aa9.03□□□□□ -0.96
NEDD9-204ENST00000448183 YEATS4O95619 227 aa9.02□□□□□ -0.96
NEDD9-204ENST00000448183 GUCY1B3Q02153 619 aa9.02□□□□□ -0.96
NEDD9-204ENST00000448183 SNW1Q13573 536 aaKnown RBP9.02□□□□□ -0.96
NEDD9-204ENST00000448183 TOM1L2Q6ZVM7 507 aa9.02□□□□□ -0.96
NEDD9-204ENST00000448183 PIBF1Q8WXW3 757 aa9.02□□□□□ -0.96
NEDD9-204ENST00000448183 MEX3CQ5U5Q3 659 aaKnown RBP9.02□□□□□ -0.97
NEDD9-204ENST00000448183 TMC6Q7Z403 805 aa9.02□□□□□ -0.97
NEDD9-204ENST00000448183 MIS18AQ9NYP9 233 aa9.02□□□□□ -0.97
NEDD9-204ENST00000448183 TFIP11Q9UBB9 837 aaKnown RBP9.02□□□□□ -0.97
NEDD9-204ENST00000448183 PAXBP1Q9Y5B6 917 aa9.02□□□□□ -0.97
NEDD9-204ENST00000448183 IFIT1P09914 478 aaKnown RBP9.02□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC113Q9H0I3 377 aa9.02□□□□□ -0.97
NEDD9-204ENST00000448183 PRG4Q92954 1404 aaPredicted RBP9.02□□□□□ -0.97
NEDD9-204ENST00000448183 FGFR1OPO95684 399 aaKnown RBP9.02□□□□□ -0.97
NEDD9-204ENST00000448183 IFFO1Q0D2I5 559 aa9.02□□□□□ -0.97
NEDD9-204ENST00000448183 METTL24Q5JXM2 366 aa9.02□□□□□ -0.97
NEDD9-204ENST00000448183 NUP88Q99567 741 aaPredicted RBP9.02□□□□□ -0.97
NEDD9-204ENST00000448183 GJB2P29033 226 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 CPLX3Q8WVH0 158 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 TRERF1Q96PN7 1200 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 TSG101Q99816 390 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 DESP17661 470 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 ZNF76P36508 570 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 IGHMBP2P38935 993 aaKnown RBP9.01□□□□□ -0.97
NEDD9-204ENST00000448183 LRSAM1Q6UWE0 723 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC91Q7Z6B0 441 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 NAPBQ9H115 298 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 ABCF2Q9UG63 623 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 POTEJP0CG39 1038 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 HCLS1P14317 486 aaPredicted RBP9.01□□□□□ -0.97
NEDD9-204ENST00000448183 SSR1P43307 286 aaKnown RBP9.01□□□□□ -0.97
NEDD9-204ENST00000448183 ZSCAN23Q3MJ62 389 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 RBM27Q9P2N5 1060 aaKnown RBP9.01□□□□□ -0.97
NEDD9-204ENST00000448183 SMC1AQ14683 1233 aaKnown RBP9.01□□□□□ -0.97
NEDD9-204ENST00000448183 THEMISQ8N1K5 641 aaPredicted RBP9.01□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC150Q8NCX0 1101 aa9.01□□□□□ -0.97
NEDD9-204ENST00000448183 CTCFLQ8NI51 663 aaPredicted RBP9.01□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC85AQ96PX6 553 aaPredicted RBP9.01□□□□□ -0.97
NEDD9-204ENST00000448183 F6X3S4 739 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 TAF7Q15545 349 aaPredicted RBP9□□□□□ -0.97
NEDD9-204ENST00000448183 SPECC1Q5M775 1068 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 CEP135Q66GS9 1140 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 NAA15Q9BXJ9 866 aaKnown RBP9□□□□□ -0.97
NEDD9-204ENST00000448183 ECHDC1Q9NTX5 307 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 ZHX1Q9UKY1 873 aaPredicted RBP9□□□□□ -0.97
NEDD9-204ENST00000448183 GOLGA6L10A0A0M3HER8 536 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 USP5P45974 858 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 RNF187Q5TA31 235 aaPredicted RBP9□□□□□ -0.97
NEDD9-204ENST00000448183 EVI5LQ96CN4 794 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 NUDT16Q96DE0 195 aaKnown RBP9□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC8Q9H0W5 538 aaPredicted RBP9□□□□□ -0.97
NEDD9-204ENST00000448183 ZNF287Q9HBT7 754 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 PTPRCP08575 1304 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 BIN1O00499 593 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 TDRD12Q587J7 1177 aaKnown RBP9□□□□□ -0.97
NEDD9-204ENST00000448183 DNAAF4Q8WXU2 420 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 RAB34Q9BZG1 259 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 SPINK5Q9NQ38 1064 aaPredicted RBP9□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC171Q6TFL3 1326 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 GOLGA8BA8MQT2 603 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 ZNF213O14771 459 aa9□□□□□ -0.97
NEDD9-204ENST00000448183 XRCC6P12956 609 aaKnown RBP eCLIP9□□□□□ -0.97
NEDD9-204ENST00000448183 GSTTP1A0A1W2PQM5 241 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 SPDYE4A6NLX3 237 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 MINDY4BA8MYZ0 360 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 KIF20AO95235 890 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 IGHDP01880 384 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC175P0C221 793 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 CCDC178Q5BJE1 867 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 KRT222Q8N1A0 295 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 SLC12A7Q9Y666 1083 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 GCOM1H8Y6P7 765 aaPredicted RBP8.99□□□□□ -0.97
NEDD9-204ENST00000448183 MYZAPP0CAP1 466 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 LMAN1P49257 510 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 GNG11P61952 73 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 TTC22Q5TAA0 569 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 KRI1Q8N9T8 703 aaKnown RBP8.99□□□□□ -0.97
NEDD9-204ENST00000448183 ALS2CR12Q96Q35 445 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 SEC63Q9UGP8 760 aaKnown RBP8.99□□□□□ -0.97
NEDD9-204ENST00000448183 IQGAP2Q13576 1575 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 NCOA1Q15788 1441 aa8.99□□□□□ -0.97
NEDD9-204ENST00000448183 CCT2P78371 535 aaKnown RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms