RNA–Protein interactions for RNA: ENST00000447216.2

TRAPPC4-203, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 980 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-203ENST00000447216 CAMKK2Q96RR4 588 aa23.2■■□□□ 1.3
TRAPPC4-203ENST00000447216 HOXB7P09629 217 aa23.19■■□□□ 1.3
TRAPPC4-203ENST00000447216 HDGFL1Q5TGJ6 251 aa23.19■■□□□ 1.3
TRAPPC4-203ENST00000447216 CYP19A1P11511 503 aaPredicted RBP23.18■■□□□ 1.3
TRAPPC4-203ENST00000447216 SLC27A3Q5K4L6 730 aa23.18■■□□□ 1.3
TRAPPC4-203ENST00000447216 C4BP0C0L5 1744 aa23.18■■□□□ 1.3
TRAPPC4-203ENST00000447216 NUP188Q5SRE5 1749 aa23.18■■□□□ 1.3
TRAPPC4-203ENST00000447216 SOS1Q07889 1333 aaPredicted RBP23.17■■□□□ 1.3
TRAPPC4-203ENST00000447216 PIP4K2AP48426 406 aaPredicted RBP23.17■■□□□ 1.3
TRAPPC4-203ENST00000447216 TEX13AQ9BXU3 409 aaPredicted RBP23.17■■□□□ 1.3
TRAPPC4-203ENST00000447216 A1BGP04217 495 aa23.16■■□□□ 1.3
TRAPPC4-203ENST00000447216 STARD3NLO95772 234 aa23.15■■□□□ 1.3
TRAPPC4-203ENST00000447216 ANXA1P04083 346 aa23.14■■□□□ 1.29
TRAPPC4-203ENST00000447216 CT47B1P0C2W7 299 aaPredicted RBP23.14■■□□□ 1.29
TRAPPC4-203ENST00000447216 CRKLP46109 303 aaKnown RBP23.14■■□□□ 1.29
TRAPPC4-203ENST00000447216 TUBGCP6Q96RT7 1819 aa23.14■■□□□ 1.29
TRAPPC4-203ENST00000447216 PROSER3Q2NL68 480 aa23.13■■□□□ 1.29
TRAPPC4-203ENST00000447216 CCDC30Q5VVM6 783 aa23.13■■□□□ 1.29
TRAPPC4-203ENST00000447216 INTS5Q6P9B9 1019 aaKnown RBP23.13■■□□□ 1.29
TRAPPC4-203ENST00000447216 BCL2L13Q9BXK5 485 aa23.13■■□□□ 1.29
TRAPPC4-203ENST00000447216 CHPF2Q9P2E5 772 aa23.13■■□□□ 1.29
TRAPPC4-203ENST00000447216 UBR3Q6ZT12 1888 aa23.13■■□□□ 1.29
TRAPPC4-203ENST00000447216 NBPF26B4DH59 902 aa23.12■■□□□ 1.29
TRAPPC4-203ENST00000447216 RARSP54136 660 aaKnown RBP23.12■■□□□ 1.29
TRAPPC4-203ENST00000447216 NBPF14Q5TI25 921 aa23.12■■□□□ 1.29
TRAPPC4-203ENST00000447216 NBPF10Q6P3W6 841 aaKnown RBP23.12■■□□□ 1.29
TRAPPC4-203ENST00000447216 NBPF15Q8N660 670 aa23.12■■□□□ 1.29
TRAPPC4-203ENST00000447216 SSH1Q8WYL5 1049 aa23.12■■□□□ 1.29
TRAPPC4-203ENST00000447216 CCDC87Q9NVE4 849 aa23.12■■□□□ 1.29
TRAPPC4-203ENST00000447216 ZBTB1Q9Y2K1 713 aa23.12■■□□□ 1.29
TRAPPC4-203ENST00000447216 MYL6BP14649 208 aa23.11■■□□□ 1.29
TRAPPC4-203ENST00000447216 CANXP27824 592 aaKnown RBP23.11■■□□□ 1.29
TRAPPC4-203ENST00000447216 PDIA6Q15084 440 aa23.11■■□□□ 1.29
TRAPPC4-203ENST00000447216 CNTNAP4Q9C0A0 1308 aa23.1■■□□□ 1.29
TRAPPC4-203ENST00000447216 STK31Q9BXU1 1019 aa23.1■■□□□ 1.29
TRAPPC4-203ENST00000447216 SMIM5Q71RC9 77 aa23.09■■□□□ 1.29
TRAPPC4-203ENST00000447216 DDX21Q9NR30 783 aaKnown RBP eCLIP23.09■■□□□ 1.29
TRAPPC4-203ENST00000447216 SMC4Q9NTJ3 1288 aa23.09■■□□□ 1.29
TRAPPC4-203ENST00000447216 RCAN3Q9UKA8 241 aa23.09■■□□□ 1.29
TRAPPC4-203ENST00000447216 BCAR3O75815 825 aa23.08■■□□□ 1.29
TRAPPC4-203ENST00000447216 RC3H1Q5TC82 1133 aaKnown RBP23.08■■□□□ 1.29
TRAPPC4-203ENST00000447216 MRPL50Q8N5N7 158 aaKnown RBP23.08■■□□□ 1.29
TRAPPC4-203ENST00000447216 ZNF428Q96B54 188 aa23.08■■□□□ 1.29
TRAPPC4-203ENST00000447216 AK7Q96M32 723 aa23.08■■□□□ 1.29
TRAPPC4-203ENST00000447216 DBF4Q9UBU7 674 aaPredicted RBP23.08■■□□□ 1.29
TRAPPC4-203ENST00000447216 ZNF330Q9Y3S2 320 aaPredicted RBP23.08■■□□□ 1.29
TRAPPC4-203ENST00000447216 ERBB4Q15303 1308 aa23.08■■□□□ 1.28
TRAPPC4-203ENST00000447216 GNPATO15228 680 aa23.07■■□□□ 1.28
TRAPPC4-203ENST00000447216 SLC4A2P04920 1241 aa23.07■■□□□ 1.28
TRAPPC4-203ENST00000447216 ZNF827Q17R98 1081 aa23.07■■□□□ 1.28
TRAPPC4-203ENST00000447216 ALDH1L2Q3SY69 923 aa23.07■■□□□ 1.28
TRAPPC4-203ENST00000447216 CHMP4AQ9BY43 222 aa23.07■■□□□ 1.28
TRAPPC4-203ENST00000447216 G2E3Q7L622 706 aa23.06■■□□□ 1.28
TRAPPC4-203ENST00000447216 PHAXQ9H814 394 aaKnown RBP23.06■■□□□ 1.28
TRAPPC4-203ENST00000447216 ANO8Q9HCE9 1232 aaPredicted RBP23.06■■□□□ 1.28
TRAPPC4-203ENST00000447216 LRP10Q7Z4F1 713 aa23.05■■□□□ 1.28
TRAPPC4-203ENST00000447216 AMIGO3Q86WK7 504 aa23.05■■□□□ 1.28
TRAPPC4-203ENST00000447216 AKT1S1Q96B36 256 aa23.05■■□□□ 1.28
TRAPPC4-203ENST00000447216 C4AP0C0L4 1744 aa23.05■■□□□ 1.28
TRAPPC4-203ENST00000447216 HYPKQ9NX55 129 aa23.04■■□□□ 1.28
TRAPPC4-203ENST00000447216 RPS6KA4O75676 772 aa23.03■■□□□ 1.28
TRAPPC4-203ENST00000447216 CENPBP07199 599 aaPredicted RBP23.03■■□□□ 1.28
TRAPPC4-203ENST00000447216 IL6STP40189 918 aaPredicted RBP23.03■■□□□ 1.28
TRAPPC4-203ENST00000447216 AIMP1Q12904 312 aaKnown RBP23.03■■□□□ 1.28
TRAPPC4-203ENST00000447216 XAGE3Q8WTP9 111 aa23.03■■□□□ 1.28
TRAPPC4-203ENST00000447216 PHF14O94880 888 aa23.02■■□□□ 1.28
TRAPPC4-203ENST00000447216 EIF5P55010 431 aaKnown RBP23.02■■□□□ 1.28
TRAPPC4-203ENST00000447216 RTCBQ9Y3I0 505 aaKnown RBP23.02■■□□□ 1.28
TRAPPC4-203ENST00000447216 QSER1Q2KHR3 1735 aa23.02■■□□□ 1.28
TRAPPC4-203ENST00000447216 COL15A1P39059 1388 aa23.01■■□□□ 1.27
TRAPPC4-203ENST00000447216 TTLL7Q6ZT98 887 aa23.01■■□□□ 1.27
TRAPPC4-203ENST00000447216 COPS6Q7L5N1 327 aa23.01■■□□□ 1.27
TRAPPC4-203ENST00000447216 STK32BQ9NY57 414 aa23.01■■□□□ 1.27
TRAPPC4-203ENST00000447216 ARFGEF2Q9Y6D5 1785 aa23■■□□□ 1.27
TRAPPC4-203ENST00000447216 HMGB2P26583 209 aaKnown RBP23■■□□□ 1.27
TRAPPC4-203ENST00000447216 FLIIQ13045 1269 aa23■■□□□ 1.27
TRAPPC4-203ENST00000447216 ARXQ96QS3 562 aa23■■□□□ 1.27
TRAPPC4-203ENST00000447216 TFCP2L1Q9NZI6 479 aa23■■□□□ 1.27
TRAPPC4-203ENST00000447216 NUP98P52948 1817 aa23■■□□□ 1.27
TRAPPC4-203ENST00000447216 BCORQ6W2J9 1755 aa22.99■■□□□ 1.27
TRAPPC4-203ENST00000447216 FRAT1Q92837 279 aaPredicted RBP22.99■■□□□ 1.27
TRAPPC4-203ENST00000447216 NOB1Q9ULX3 412 aaKnown RBP22.99■■□□□ 1.27
TRAPPC4-203ENST00000447216 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.98■■□□□ 1.27
TRAPPC4-203ENST00000447216 BRPF1P55201 1214 aaPredicted RBP22.98■■□□□ 1.27
TRAPPC4-203ENST00000447216 SLC15A2Q16348 729 aa22.98■■□□□ 1.27
TRAPPC4-203ENST00000447216 NPM2Q86SE8 214 aaKnown RBP22.98■■□□□ 1.27
TRAPPC4-203ENST00000447216 TBC1D2BQ9UPU7 963 aa22.98■■□□□ 1.27
TRAPPC4-203ENST00000447216 DZIP3Q86Y13 1208 aaKnown RBP22.97■■□□□ 1.27
TRAPPC4-203ENST00000447216 ARHGEF1Q92888 912 aaKnown RBP22.97■■□□□ 1.27
TRAPPC4-203ENST00000447216 FKBP5Q13451 457 aaPredicted RBP22.96■■□□□ 1.27
TRAPPC4-203ENST00000447216 TNNQ9UQP3 1299 aa22.96■■□□□ 1.27
TRAPPC4-203ENST00000447216 KIF16BQ96L93 1317 aa22.96■■□□□ 1.27
TRAPPC4-203ENST00000447216 SCN7AQ01118 1682 aa22.96■■□□□ 1.27
TRAPPC4-203ENST00000447216 PLIN1O60240 522 aa22.95■■□□□ 1.26
TRAPPC4-203ENST00000447216 SSFA2P28290 1259 aa22.95■■□□□ 1.26
TRAPPC4-203ENST00000447216 TRAPPC3LQ5T215 181 aa22.95■■□□□ 1.26
TRAPPC4-203ENST00000447216 ZBTB3Q9H5J0 574 aa22.95■■□□□ 1.26
TRAPPC4-203ENST00000447216 SRP68Q9UHB9 627 aaKnown RBP22.95■■□□□ 1.26
TRAPPC4-203ENST00000447216 PNPLA7Q6ZV29 1317 aa22.94■■□□□ 1.26
TRAPPC4-203ENST00000447216 A0A087WZG4 1122 aa22.94■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms