RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 XPCQ01831 940 aaPredicted RBP19.57■□□□□ 0.72
SHQ1-202ENST00000444040 PKP1Q13835 747 aa19.57■□□□□ 0.72
SHQ1-202ENST00000444040 ADCY9O60503 1353 aa19.57■□□□□ 0.72
SHQ1-202ENST00000444040 GOLGA6L22H0YM25 854 aa19.57■□□□□ 0.72
SHQ1-202ENST00000444040 SURF6O75683 361 aaKnown RBP19.57■□□□□ 0.72
SHQ1-202ENST00000444040 GAS2L3Q86XJ1 694 aa19.57■□□□□ 0.72
SHQ1-202ENST00000444040 RHPN1Q8TCX5 695 aa19.57■□□□□ 0.72
SHQ1-202ENST00000444040 IL17RAQ96F46 866 aa19.57■□□□□ 0.72
SHQ1-202ENST00000444040 OVOS2A0A0G2JMS6 1433 aa19.56■□□□□ 0.72
SHQ1-202ENST00000444040 SRGAP3O43295 1099 aa19.56■□□□□ 0.72
SHQ1-202ENST00000444040 ANXA1P04083 346 aa19.56■□□□□ 0.72
SHQ1-202ENST00000444040 ADAMTSL3P82987 1691 aa19.56■□□□□ 0.72
SHQ1-202ENST00000444040 HEG1Q9ULI3 1381 aa19.56■□□□□ 0.72
SHQ1-202ENST00000444040 ANKRD24Q8TF21 1146 aa19.56■□□□□ 0.72
SHQ1-202ENST00000444040 PALD1Q9ULE6 856 aa19.56■□□□□ 0.72
SHQ1-202ENST00000444040 NEK4P51957 841 aa19.55■□□□□ 0.72
SHQ1-202ENST00000444040 ANAPC15P60006 121 aa19.55■□□□□ 0.72
SHQ1-202ENST00000444040 NUTM1Q86Y26 1132 aa19.55■□□□□ 0.72
SHQ1-202ENST00000444040 PI4K2BQ8TCG2 481 aa19.55■□□□□ 0.72
SHQ1-202ENST00000444040 KLHL40Q2TBA0 621 aa19.54■□□□□ 0.72
SHQ1-202ENST00000444040 ANO2Q9NQ90 1003 aa19.54■□□□□ 0.72
SHQ1-202ENST00000444040 DBF4Q9UBU7 674 aaPredicted RBP19.54■□□□□ 0.72
SHQ1-202ENST00000444040 AXIN2Q9Y2T1 843 aa19.54■□□□□ 0.72
SHQ1-202ENST00000444040 C1orf141Q5JVX7 400 aa19.54■□□□□ 0.72
SHQ1-202ENST00000444040 KIF1BPQ96EK5 621 aa19.54■□□□□ 0.72
SHQ1-202ENST00000444040 ZDHHC9Q9Y397 364 aa19.54■□□□□ 0.72
SHQ1-202ENST00000444040 CAMTA1Q9Y6Y1 1673 aa19.54■□□□□ 0.72
SHQ1-202ENST00000444040 GIGYF1O75420 1035 aaPredicted RBP19.53■□□□□ 0.72
SHQ1-202ENST00000444040 MCCP23508 829 aa19.53■□□□□ 0.72
SHQ1-202ENST00000444040 IL25Q9H293 177 aa19.53■□□□□ 0.72
SHQ1-202ENST00000444040 AK9Q5TCS8 1911 aa19.53■□□□□ 0.72
SHQ1-202ENST00000444040 TMX3Q96JJ7 454 aa19.53■□□□□ 0.72
SHQ1-202ENST00000444040 TRPM3Q9HCF6 1732 aaPredicted RBP19.53■□□□□ 0.72
SHQ1-202ENST00000444040 EPB41L2O43491 1005 aaKnown RBP19.52■□□□□ 0.72
SHQ1-202ENST00000444040 MCM2P49736 904 aa19.52■□□□□ 0.72
SHQ1-202ENST00000444040 MTX1Q13505 466 aa19.52■□□□□ 0.71
SHQ1-202ENST00000444040 MCTP1Q6DN14 999 aa19.51■□□□□ 0.71
SHQ1-202ENST00000444040 DDX49Q9Y6V7 483 aaKnown RBP19.51■□□□□ 0.71
SHQ1-202ENST00000444040 PLEKHG5O94827 1062 aa19.51■□□□□ 0.71
SHQ1-202ENST00000444040 CUL4AQ13619 759 aa19.51■□□□□ 0.71
SHQ1-202ENST00000444040 PROSER3Q2NL68 480 aa19.51■□□□□ 0.71
SHQ1-202ENST00000444040 LMOD2Q6P5Q4 547 aa19.51■□□□□ 0.71
SHQ1-202ENST00000444040 LMBRD1Q9NUN5 540 aa19.51■□□□□ 0.71
SHQ1-202ENST00000444040 KRT28Q7Z3Y7 464 aa19.5■□□□□ 0.71
SHQ1-202ENST00000444040 RRAGDQ9NQL2 400 aaPredicted RBP19.5■□□□□ 0.71
SHQ1-202ENST00000444040 LMTK3Q96Q04 1460 aa19.5■□□□□ 0.71
SHQ1-202ENST00000444040 PRAMEF22A3QJZ6 481 aa19.49■□□□□ 0.71
SHQ1-202ENST00000444040 HSP90AB4PQ58FF6 505 aa19.49■□□□□ 0.71
SHQ1-202ENST00000444040 MAP3K2Q9Y2U5 619 aa19.49■□□□□ 0.71
SHQ1-202ENST00000444040 ALDH1L1O75891 902 aa19.49■□□□□ 0.71
SHQ1-202ENST00000444040 KSR2Q6VAB6 950 aa19.49■□□□□ 0.71
SHQ1-202ENST00000444040 USP42Q9H9J4 1324 aaKnown RBP19.49■□□□□ 0.71
SHQ1-202ENST00000444040 MST1RQ04912 1400 aa19.48■□□□□ 0.71
SHQ1-202ENST00000444040 MAP4K4O95819 1239 aaPredicted RBP19.48■□□□□ 0.71
SHQ1-202ENST00000444040 HSPA4P34932 840 aa19.48■□□□□ 0.71
SHQ1-202ENST00000444040 C1orf167Q5SNV9 1468 aa19.48■□□□□ 0.71
SHQ1-202ENST00000444040 ADAMTS7Q9UKP4 1686 aa19.48■□□□□ 0.71
SHQ1-202ENST00000444040 SIPA1L3O60292 1781 aaPredicted RBP19.47■□□□□ 0.71
SHQ1-202ENST00000444040 ERBB3P21860 1342 aa19.47■□□□□ 0.71
SHQ1-202ENST00000444040 SGSM2O43147 1006 aa19.47■□□□□ 0.71
SHQ1-202ENST00000444040 PROSER2Q86WR7 435 aaPredicted RBP19.46■□□□□ 0.71
SHQ1-202ENST00000444040 INTS4Q96HW7 963 aaKnown RBP19.46■□□□□ 0.71
SHQ1-202ENST00000444040 CNTROBQ8N137 903 aa19.45■□□□□ 0.7
SHQ1-202ENST00000444040 HYPKQ9NX55 129 aa19.45■□□□□ 0.7
SHQ1-202ENST00000444040 TTC41PQ6P2S7 1318 aa19.45■□□□□ 0.7
SHQ1-202ENST00000444040 CRYBG1Q9Y4K1 1723 aa19.45■□□□□ 0.7
SHQ1-202ENST00000444040 RAD50Q92878 1312 aa19.45■□□□□ 0.7
SHQ1-202ENST00000444040 CWF19L2Q2TBE0 894 aaKnown RBP19.45■□□□□ 0.7
SHQ1-202ENST00000444040 C9orf78Q9NZ63 289 aaPredicted RBP19.45■□□□□ 0.7
SHQ1-202ENST00000444040 KIF1AQ12756 1690 aa19.44■□□□□ 0.7
SHQ1-202ENST00000444040 UPF3BQ9BZI7 483 aaKnown RBP19.44■□□□□ 0.7
SHQ1-202ENST00000444040 C19orf44Q9H6X5 657 aa19.44■□□□□ 0.7
SHQ1-202ENST00000444040 PDIA6Q15084 440 aa19.43■□□□□ 0.7
SHQ1-202ENST00000444040 LSG1Q9H089 658 aaKnown RBP19.43■□□□□ 0.7
SHQ1-202ENST00000444040 BRD1O95696 1058 aa19.43■□□□□ 0.7
SHQ1-202ENST00000444040 DDX21Q9NR30 783 aaKnown RBP eCLIP19.43■□□□□ 0.7
SHQ1-202ENST00000444040 UTYO14607 1347 aa19.43■□□□□ 0.7
SHQ1-202ENST00000444040 ZNF445P59923 1031 aa19.43■□□□□ 0.7
SHQ1-202ENST00000444040 LINS1Q8NG48 757 aa19.43■□□□□ 0.7
SHQ1-202ENST00000444040 RGPD5Q99666 1765 aa19.42■□□□□ 0.7
SHQ1-202ENST00000444040 ALS2Q96Q42 1657 aa19.42■□□□□ 0.7
SHQ1-202ENST00000444040 PRPF40AO75400 957 aaKnown RBP19.42■□□□□ 0.7
SHQ1-202ENST00000444040 GLRX3O76003 335 aaKnown RBP19.42■□□□□ 0.7
SHQ1-202ENST00000444040 ZC3H6P61129 1189 aaKnown RBP19.42■□□□□ 0.7
SHQ1-202ENST00000444040 OS9Q13438 667 aaPredicted RBP19.42■□□□□ 0.7
SHQ1-202ENST00000444040 CLASRPQ8N2M8 674 aaKnown RBP19.42■□□□□ 0.7
SHQ1-202ENST00000444040 KAZALD1Q96I82 304 aa19.42■□□□□ 0.7
SHQ1-202ENST00000444040 CHAMP1Q96JM3 812 aa19.42■□□□□ 0.7
SHQ1-202ENST00000444040 HDAC5Q9UQL6 1122 aa19.42■□□□□ 0.7
SHQ1-202ENST00000444040 PA2G4Q9UQ80 394 aaKnown RBP19.41■□□□□ 0.7
SHQ1-202ENST00000444040 CAVIN1Q6NZI2 390 aaKnown RBP19.41■□□□□ 0.7
SHQ1-202ENST00000444040 NOL8Q76FK4 1167 aaKnown RBP19.41■□□□□ 0.7
SHQ1-202ENST00000444040 GPT2Q8TD30 523 aa19.41■□□□□ 0.7
SHQ1-202ENST00000444040 GRM8O00222 908 aa19.4■□□□□ 0.7
SHQ1-202ENST00000444040 ZNF790Q6PG37 636 aa19.4■□□□□ 0.7
SHQ1-202ENST00000444040 SNX14Q9Y5W7 946 aa19.4■□□□□ 0.7
SHQ1-202ENST00000444040 KDM6AO15550 1401 aaPredicted RBP19.4■□□□□ 0.7
SHQ1-202ENST00000444040 ZSCAN23Q3MJ62 389 aa19.4■□□□□ 0.7
SHQ1-202ENST00000444040 SUCLG2Q96I99 432 aa19.4■□□□□ 0.7
SHQ1-202ENST00000444040 ERC1Q8IUD2 1116 aa19.39■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms