RNA–Protein interactions for RNA: ENST00000440653.1

HDAC6-209, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 658 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-209ENST00000440653 SLC27A3Q5K4L6 730 aa11.6□□□□□ -0.55
HDAC6-209ENST00000440653 SSH1Q8WYL5 1049 aa11.6□□□□□ -0.55
HDAC6-209ENST00000440653 COL18A1P39060 1754 aa11.59□□□□□ -0.55
HDAC6-209ENST00000440653 PLEKHG2Q9H7P9 1386 aa11.59□□□□□ -0.55
HDAC6-209ENST00000440653 TRIM27P14373 513 aa11.59□□□□□ -0.55
HDAC6-209ENST00000440653 GAS2L2Q8NHY3 880 aa11.59□□□□□ -0.55
HDAC6-209ENST00000440653 PHACTR3Q96KR7 559 aa11.59□□□□□ -0.55
HDAC6-209ENST00000440653 ANP32EQ9BTT0 268 aa11.59□□□□□ -0.55
HDAC6-209ENST00000440653 BCL2L13Q9BXK5 485 aa11.59□□□□□ -0.55
HDAC6-209ENST00000440653 RWDD1Q9H446 243 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-209ENST00000440653 CICQ96RK0 1608 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-209ENST00000440653 NCAPD2Q15021 1401 aa11.59□□□□□ -0.55
HDAC6-209ENST00000440653 SOS1Q07889 1333 aaPredicted RBP11.59□□□□□ -0.55
HDAC6-209ENST00000440653 HTATSF1O43719 755 aaKnown RBP11.58□□□□□ -0.56
HDAC6-209ENST00000440653 RLBP1P12271 317 aa11.58□□□□□ -0.56
HDAC6-209ENST00000440653 AMPHP49418 695 aa11.58□□□□□ -0.56
HDAC6-209ENST00000440653 SULT6B1Q6IMI4 303 aa11.58□□□□□ -0.56
HDAC6-209ENST00000440653 DDRGK1Q96HY6 314 aa11.58□□□□□ -0.56
HDAC6-209ENST00000440653 ABHD8Q96I13 439 aa11.58□□□□□ -0.56
HDAC6-209ENST00000440653 CARD10Q9BWT7 1032 aa11.58□□□□□ -0.56
HDAC6-209ENST00000440653 RRAGCQ9HB90 399 aa11.58□□□□□ -0.56
HDAC6-209ENST00000440653 KDM3BQ7LBC6 1761 aa11.58□□□□□ -0.56
HDAC6-209ENST00000440653 HDAC1Q13547 482 aaPredicted RBP11.57□□□□□ -0.56
HDAC6-209ENST00000440653 KCNH5Q8NCM2 988 aa11.57□□□□□ -0.56
HDAC6-209ENST00000440653 IPO9Q96P70 1041 aaKnown RBP11.57□□□□□ -0.56
HDAC6-209ENST00000440653 MBIPQ9NS73 344 aa11.57□□□□□ -0.56
HDAC6-209ENST00000440653 ABCC4O15439 1325 aa11.57□□□□□ -0.56
HDAC6-209ENST00000440653 RGPD5Q99666 1765 aa11.56□□□□□ -0.56
HDAC6-209ENST00000440653 FBLN1P23142 703 aa11.56□□□□□ -0.56
HDAC6-209ENST00000440653 NLRP6P59044 892 aa11.56□□□□□ -0.56
HDAC6-209ENST00000440653 TWISTNBQ3B726 338 aaPredicted RBP11.56□□□□□ -0.56
HDAC6-209ENST00000440653 ITPRIPQ8IWB1 547 aa11.56□□□□□ -0.56
HDAC6-209ENST00000440653 API5Q9BZZ5 524 aaKnown RBP11.56□□□□□ -0.56
HDAC6-209ENST00000440653 PRDM10Q9NQV6 1147 aa11.56□□□□□ -0.56
HDAC6-209ENST00000440653 NOP58Q9Y2X3 529 aaKnown RBP11.56□□□□□ -0.56
HDAC6-209ENST00000440653 PXDNLA1KZ92 1463 aa11.56□□□□□ -0.56
HDAC6-209ENST00000440653 KCPQ6ZWJ8 1503 aa11.55□□□□□ -0.56
HDAC6-209ENST00000440653 CSB-PGBD3P0DP91 1061 aa11.55□□□□□ -0.56
HDAC6-209ENST00000440653 HOXC9P31274 260 aa11.55□□□□□ -0.56
HDAC6-209ENST00000440653 HSP90AB2PQ58FF8 381 aa11.55□□□□□ -0.56
HDAC6-209ENST00000440653 AEBP1Q8IUX7 1158 aa11.55□□□□□ -0.56
HDAC6-209ENST00000440653 SMC1BQ8NDV3 1235 aa11.55□□□□□ -0.56
HDAC6-209ENST00000440653 ADAMTS7Q9UKP4 1686 aa11.55□□□□□ -0.56
HDAC6-209ENST00000440653 VAMP4O75379 141 aa11.54□□□□□ -0.56
HDAC6-209ENST00000440653 RGS19P49795 217 aa11.54□□□□□ -0.56
HDAC6-209ENST00000440653 ARHGAP27Q6ZUM4 889 aa11.54□□□□□ -0.56
HDAC6-209ENST00000440653 SMIM5Q71RC9 77 aa11.54□□□□□ -0.56
HDAC6-209ENST00000440653 BABAM1Q9NWV8 329 aa11.54□□□□□ -0.56
HDAC6-209ENST00000440653 NOB1Q9ULX3 412 aaKnown RBP11.54□□□□□ -0.56
HDAC6-209ENST00000440653 PTPRCP08575 1304 aa11.54□□□□□ -0.56
HDAC6-209ENST00000440653 TNRC18O15417 2968 aaPredicted RBP11.53□□□□□ -0.56
HDAC6-209ENST00000440653 MRPL50Q8N5N7 158 aaKnown RBP11.53□□□□□ -0.56
HDAC6-209ENST00000440653 RTF1Q92541 710 aaKnown RBP11.53□□□□□ -0.56
HDAC6-209ENST00000440653 LAS1LQ9Y4W2 734 aaKnown RBP11.53□□□□□ -0.56
HDAC6-209ENST00000440653 SIPA1L3O60292 1781 aaPredicted RBP11.53□□□□□ -0.56
HDAC6-209ENST00000440653 RGPD2P0DJD1 1756 aa11.53□□□□□ -0.56
HDAC6-209ENST00000440653 CCDC85CA6NKD9 419 aa11.52□□□□□ -0.57
HDAC6-209ENST00000440653 CHL1O00533 1208 aa11.52□□□□□ -0.57
HDAC6-209ENST00000440653 IGHDP01880 384 aa11.52□□□□□ -0.57
HDAC6-209ENST00000440653 C8orf34Q49A92 452 aa11.52□□□□□ -0.57
HDAC6-209ENST00000440653 C9orf131Q5VYM1 1079 aa11.52□□□□□ -0.57
HDAC6-209ENST00000440653 TMEM57Q8N5G2 664 aa11.52□□□□□ -0.57
HDAC6-209ENST00000440653 RGS3P49796 1198 aa11.51□□□□□ -0.57
HDAC6-209ENST00000440653 THUMPD2Q9BTF0 503 aaKnown RBP11.51□□□□□ -0.57
HDAC6-209ENST00000440653 ZBTB40Q9NUA8 1239 aa11.51□□□□□ -0.57
HDAC6-209ENST00000440653 MKRN1Q9UHC7 482 aaKnown RBP11.51□□□□□ -0.57
HDAC6-209ENST00000440653 CCNL1Q9UK58 526 aaPredicted RBP11.51□□□□□ -0.57
HDAC6-209ENST00000440653 BCS1LQ9Y276 419 aa11.51□□□□□ -0.57
HDAC6-209ENST00000440653 PCDHB15Q9Y5E8 787 aa11.51□□□□□ -0.57
HDAC6-209ENST00000440653 LY75O60449 1722 aa11.5□□□□□ -0.57
HDAC6-209ENST00000440653 LBX1P52954 281 aa11.5□□□□□ -0.57
HDAC6-209ENST00000440653 SMC5Q8IY18 1101 aa11.5□□□□□ -0.57
HDAC6-209ENST00000440653 IP6K1Q92551 441 aa11.5□□□□□ -0.57
HDAC6-209ENST00000440653 EYA1Q99502 592 aa11.5□□□□□ -0.57
HDAC6-209ENST00000440653 CHMP4AQ9BY43 222 aa11.5□□□□□ -0.57
HDAC6-209ENST00000440653 TNNQ9UQP3 1299 aa11.5□□□□□ -0.57
HDAC6-209ENST00000440653 ERBB3P21860 1342 aa11.5□□□□□ -0.57
HDAC6-209ENST00000440653 PKD1L3Q7Z443 1732 aa11.49□□□□□ -0.57
HDAC6-209ENST00000440653 SOX12O15370 315 aa11.49□□□□□ -0.57
HDAC6-209ENST00000440653 CTCFP49711 727 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-209ENST00000440653 ARHGEF25Q86VW2 580 aa11.49□□□□□ -0.57
HDAC6-209ENST00000440653 AMIGO3Q86WK7 504 aa11.49□□□□□ -0.57
HDAC6-209ENST00000440653 SYTL4Q96C24 671 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-209ENST00000440653 ZBTB47Q9UFB7 747 aaPredicted RBP11.49□□□□□ -0.57
HDAC6-209ENST00000440653 C10orf71Q711Q0 1435 aa11.49□□□□□ -0.57
HDAC6-209ENST00000440653 GNAT3A8MTJ3 354 aa11.48□□□□□ -0.57
HDAC6-209ENST00000440653 PRIM1P49642 420 aaKnown RBP11.48□□□□□ -0.57
HDAC6-209ENST00000440653 GCC1Q96CN9 775 aa11.48□□□□□ -0.57
HDAC6-209ENST00000440653 CEMIPQ8WUJ3 1361 aa11.48□□□□□ -0.57
HDAC6-209ENST00000440653 SCN11AQ9UI33 1791 aa11.47□□□□□ -0.57
HDAC6-209ENST00000440653 A0A0G2JLW4 131 aa11.47□□□□□ -0.57
HDAC6-209ENST00000440653 MTHFSDQ2M296 383 aaKnown RBP11.47□□□□□ -0.57
HDAC6-209ENST00000440653 TSPYL6Q8N831 410 aa11.47□□□□□ -0.57
HDAC6-209ENST00000440653 C8orf58Q8NAV2 365 aa11.47□□□□□ -0.57
HDAC6-209ENST00000440653 UPF2Q9HAU5 1272 aaKnown RBP11.47□□□□□ -0.57
HDAC6-209ENST00000440653 TSPYL4Q9UJ04 414 aa11.47□□□□□ -0.57
HDAC6-209ENST00000440653 PDZRN3Q9UPQ7 1066 aa11.47□□□□□ -0.57
HDAC6-209ENST00000440653 KIAA1551Q9HCM1 1747 aa11.46□□□□□ -0.57
HDAC6-209ENST00000440653 EIF5BO60841 1220 aaKnown RBP11.46□□□□□ -0.57
HDAC6-209ENST00000440653 HOXB7P09629 217 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms