RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 CLEC17AQ6ZS10 378 aa10.58□□□□□ -0.72
HPS4-206ENST00000439453 TMEM57Q8N5G2 664 aa10.58□□□□□ -0.72
HPS4-206ENST00000439453 BCL9O00512 1426 aa10.58□□□□□ -0.72
HPS4-206ENST00000439453 NOB1Q9ULX3 412 aaKnown RBP10.57□□□□□ -0.72
HPS4-206ENST00000439453 BMP2KLQ5H9B9 411 aa10.57□□□□□ -0.72
HPS4-206ENST00000439453 CHD1LQ86WJ1 897 aa10.57□□□□□ -0.72
HPS4-206ENST00000439453 NUP188Q5SRE5 1749 aa10.57□□□□□ -0.72
HPS4-206ENST00000439453 U2AF1L5P0DN76 240 aaPredicted RBP10.57□□□□□ -0.72
HPS4-206ENST00000439453 U2AF1Q01081 240 aaKnown RBP eCLIP10.57□□□□□ -0.726e-11■■■■□ 21.2
HPS4-206ENST00000439453 BAG4O95429 457 aaKnown RBP10.56□□□□□ -0.72
HPS4-206ENST00000439453 GAS2L2Q8NHY3 880 aa10.56□□□□□ -0.72
HPS4-206ENST00000439453 LTV1Q96GA3 475 aaPredicted RBP10.56□□□□□ -0.72
HPS4-206ENST00000439453 SCN11AQ9UI33 1791 aa10.56□□□□□ -0.72
HPS4-206ENST00000439453 IGSF1Q8N6C5 1336 aa10.56□□□□□ -0.72
HPS4-206ENST00000439453 USHBP1Q8N6Y0 703 aa10.56□□□□□ -0.72
HPS4-206ENST00000439453 MAP7D2Q96T17 732 aa10.56□□□□□ -0.72
HPS4-206ENST00000439453 HS1BP3Q53T59 392 aa10.56□□□□□ -0.72
HPS4-206ENST00000439453 FAM182BQ5T319 152 aa10.56□□□□□ -0.72
HPS4-206ENST00000439453 UPF1Q92900 1129 aaKnown RBP eCLIP10.56□□□□□ -0.72
HPS4-206ENST00000439453 R3HCC1Q9Y3T6 440 aaKnown RBP10.56□□□□□ -0.72
HPS4-206ENST00000439453 DLG5Q8TDM6 1919 aa10.56□□□□□ -0.72
HPS4-206ENST00000439453 LY75O60449 1722 aa10.55□□□□□ -0.72
HPS4-206ENST00000439453 KDRP35968 1356 aa10.55□□□□□ -0.72
HPS4-206ENST00000439453 IL13P35225 146 aa10.55□□□□□ -0.72
HPS4-206ENST00000439453 ZNF445P59923 1031 aa10.55□□□□□ -0.72
HPS4-206ENST00000439453 EYA1Q99502 592 aa10.55□□□□□ -0.72
HPS4-206ENST00000439453 RBM42Q9BTD8 480 aaKnown RBP10.55□□□□□ -0.72
HPS4-206ENST00000439453 KRT27Q7Z3Y8 459 aa10.55□□□□□ -0.72
HPS4-206ENST00000439453 SIPA1L3O60292 1781 aaPredicted RBP10.55□□□□□ -0.72
HPS4-206ENST00000439453 FAM13BQ9NYF5 915 aa10.55□□□□□ -0.72
HPS4-206ENST00000439453 MARCH10Q8NA82 808 aaPredicted RBP10.54□□□□□ -0.72
HPS4-206ENST00000439453 NLRP2Q9NX02 1062 aa10.54□□□□□ -0.72
HPS4-206ENST00000439453 CSB-PGBD3P0DP91 1061 aa10.54□□□□□ -0.72
HPS4-206ENST00000439453 PRDM4Q9UKN5 801 aa10.54□□□□□ -0.72
HPS4-206ENST00000439453 NOL7Q9UMY1 257 aaKnown RBP10.54□□□□□ -0.72
HPS4-206ENST00000439453 AK9Q5TCS8 1911 aa10.54□□□□□ -0.72
HPS4-206ENST00000439453 ZNF500O60304 480 aaPredicted RBP10.54□□□□□ -0.72
HPS4-206ENST00000439453 TBC1D9Q6ZT07 1266 aa10.54□□□□□ -0.72
HPS4-206ENST00000439453 IPO8O15397 1037 aaKnown RBP10.53□□□□□ -0.72
HPS4-206ENST00000439453 KIF16BQ96L93 1317 aa10.53□□□□□ -0.72
HPS4-206ENST00000439453 IL2RBP14784 551 aa10.53□□□□□ -0.72
HPS4-206ENST00000439453 NCLP19338 710 aaKnown RBP10.52□□□□□ -0.72
HPS4-206ENST00000439453 ZSCAN23Q3MJ62 389 aa10.52□□□□□ -0.72
HPS4-206ENST00000439453 ANKRD45Q5TZF3 282 aa10.52□□□□□ -0.72
HPS4-206ENST00000439453 MCTP1Q6DN14 999 aa10.52□□□□□ -0.72
HPS4-206ENST00000439453 CAVIN1Q6NZI2 390 aaKnown RBP10.52□□□□□ -0.72
HPS4-206ENST00000439453 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.52□□□□□ -0.72
HPS4-206ENST00000439453 PLEKHG2Q9H7P9 1386 aa10.52□□□□□ -0.72
HPS4-206ENST00000439453 PAPPAQ13219 1627 aa10.52□□□□□ -0.72
HPS4-206ENST00000439453 TMPOP42166 694 aaKnown RBP10.52□□□□□ -0.73
HPS4-206ENST00000439453 PDLIM2Q96JY6 352 aa10.52□□□□□ -0.73
HPS4-206ENST00000439453 RBSNQ9H1K0 784 aa10.52□□□□□ -0.73
HPS4-206ENST00000439453 TRIM35Q9UPQ4 493 aa10.52□□□□□ -0.73
HPS4-206ENST00000439453 UQCRHLA0A096LP55 91 aa10.52□□□□□ -0.73
HPS4-206ENST00000439453 UQCRHP07919 91 aa10.52□□□□□ -0.73
HPS4-206ENST00000439453 CDCA7Q9BWT1 371 aaPredicted RBP10.52□□□□□ -0.73
HPS4-206ENST00000439453 PTF1AQ7RTS3 328 aa10.52□□□□□ -0.73
HPS4-206ENST00000439453 TUBGCP6Q96RT7 1819 aa10.51□□□□□ -0.73
HPS4-206ENST00000439453 TAF1LQ8IZX4 1826 aa10.51□□□□□ -0.73
HPS4-206ENST00000439453 AEBP1Q8IUX7 1158 aa10.51□□□□□ -0.73
HPS4-206ENST00000439453 IL16Q14005 1332 aa10.51□□□□□ -0.73
HPS4-206ENST00000439453 LMBRD1Q9NUN5 540 aa10.51□□□□□ -0.73
HPS4-206ENST00000439453 NUCB2P80303 420 aa10.51□□□□□ -0.73
HPS4-206ENST00000439453 DDB1Q16531 1140 aa10.51□□□□□ -0.73
HPS4-206ENST00000439453 GCC1Q96CN9 775 aa10.51□□□□□ -0.73
HPS4-206ENST00000439453 PLEKHF1Q96S99 279 aa10.51□□□□□ -0.73
HPS4-206ENST00000439453 ZKSCAN5Q9Y2L8 839 aa10.5□□□□□ -0.73
HPS4-206ENST00000439453 PRIM1P49642 420 aaKnown RBP10.5□□□□□ -0.73
HPS4-206ENST00000439453 CSPP1Q1MSJ5 1256 aa10.5□□□□□ -0.73
HPS4-206ENST00000439453 CDC45O75419 566 aa10.49□□□□□ -0.73
HPS4-206ENST00000439453 DYNC1I1O14576 645 aa10.49□□□□□ -0.73
HPS4-206ENST00000439453 U2SURPO15042 1029 aaKnown RBP10.49□□□□□ -0.73
HPS4-206ENST00000439453 CYP2E1P05181 493 aaPredicted RBP10.49□□□□□ -0.73
HPS4-206ENST00000439453 RABEP1Q15276 862 aa10.49□□□□□ -0.73
HPS4-206ENST00000439453 MTERF4Q7Z6M4 381 aaKnown RBP10.49□□□□□ -0.73
HPS4-206ENST00000439453 ALDH1L2Q3SY69 923 aa10.49□□□□□ -0.73
HPS4-206ENST00000439453 UBR2Q8IWV8 1755 aa10.48□□□□□ -0.73
HPS4-206ENST00000439453 CYP27B1O15528 508 aa10.48□□□□□ -0.73
HPS4-206ENST00000439453 MCM5P33992 734 aa10.48□□□□□ -0.73
HPS4-206ENST00000439453 CICQ96RK0 1608 aaPredicted RBP10.48□□□□□ -0.73
HPS4-206ENST00000439453 KDM6AO15550 1401 aaPredicted RBP10.48□□□□□ -0.73
HPS4-206ENST00000439453 MRC1P22897 1456 aa10.48□□□□□ -0.73
HPS4-206ENST00000439453 A0A0G2JS52 829 aa10.48□□□□□ -0.73
HPS4-206ENST00000439453 SMAP1Q8IYB5 467 aaPredicted RBP10.48□□□□□ -0.73
HPS4-206ENST00000439453 ZNF831Q5JPB2 1677 aa10.47□□□□□ -0.73
HPS4-206ENST00000439453 ZBTB7BO15156 539 aaPredicted RBP10.47□□□□□ -0.73
HPS4-206ENST00000439453 C1orf115Q9H7X2 142 aa10.47□□□□□ -0.73
HPS4-206ENST00000439453 QSER1Q2KHR3 1735 aa10.47□□□□□ -0.73
HPS4-206ENST00000439453 RBM27Q9P2N5 1060 aaKnown RBP10.47□□□□□ -0.73
HPS4-206ENST00000439453 EXOC5O00471 708 aa10.47□□□□□ -0.73
HPS4-206ENST00000439453 PRPF40AO75400 957 aaKnown RBP10.47□□□□□ -0.73
HPS4-206ENST00000439453 PKP1Q13835 747 aa10.47□□□□□ -0.73
HPS4-206ENST00000439453 SASS6Q6UVJ0 657 aa10.47□□□□□ -0.73
HPS4-206ENST00000439453 FAM196AQ6ZSG2 479 aa10.47□□□□□ -0.73
HPS4-206ENST00000439453 CCDC39Q9UFE4 941 aa10.47□□□□□ -0.73
HPS4-206ENST00000439453 COL5A3P25940 1745 aaPredicted RBP10.47□□□□□ -0.73
HPS4-206ENST00000439453 GPT2Q8TD30 523 aa10.46□□□□□ -0.73
HPS4-206ENST00000439453 CHMP4BQ9H444 224 aaKnown RBP10.46□□□□□ -0.73
HPS4-206ENST00000439453 C5P01031 1676 aa10.46□□□□□ -0.73
HPS4-206ENST00000439453 ZCRB1Q8TBF4 217 aaKnown RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms