RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 EXOC6BQ9Y2D4 811 aa20.04■□□□□ 0.8
CLCNKA-203ENST00000439316 SOS1Q07889 1333 aaPredicted RBP20.04■□□□□ 0.8
CLCNKA-203ENST00000439316 COL18A1P39060 1754 aa20.03■□□□□ 0.8
CLCNKA-203ENST00000439316 NASPP49321 788 aaPredicted RBP20.03■□□□□ 0.8
CLCNKA-203ENST00000439316 CCDC30Q5VVM6 783 aa20.03■□□□□ 0.8
CLCNKA-203ENST00000439316 LRRCC1Q9C099 1032 aa20.03■□□□□ 0.8
CLCNKA-203ENST00000439316 ZDHHC9Q9Y397 364 aa20.03■□□□□ 0.8
CLCNKA-203ENST00000439316 CHRNA2Q15822 529 aa20.03■□□□□ 0.8
CLCNKA-203ENST00000439316 ESYT1Q9BSJ8 1104 aa20.03■□□□□ 0.8
CLCNKA-203ENST00000439316 ROBO1Q9Y6N7 1651 aa20.02■□□□□ 0.8
CLCNKA-203ENST00000439316 MX1P20591 662 aa20.02■□□□□ 0.8
CLCNKA-203ENST00000439316 ATP8B2P98198 1209 aa20.02■□□□□ 0.8
CLCNKA-203ENST00000439316 ERBB3P21860 1342 aa20.02■□□□□ 0.79
CLCNKA-203ENST00000439316 FKBP5Q13451 457 aaPredicted RBP20.01■□□□□ 0.79
CLCNKA-203ENST00000439316 PNMA6EA0A0J9YXQ4 647 aa20.01■□□□□ 0.79
CLCNKA-203ENST00000439316 GNAT3A8MTJ3 354 aa20.01■□□□□ 0.79
CLCNKA-203ENST00000439316 CPDO75976 1380 aa20■□□□□ 0.79
CLCNKA-203ENST00000439316 MAP3K5Q99683 1374 aa20■□□□□ 0.79
CLCNKA-203ENST00000439316 MCM2P49736 904 aa20■□□□□ 0.79
CLCNKA-203ENST00000439316 ZSCAN23Q3MJ62 389 aa20■□□□□ 0.79
CLCNKA-203ENST00000439316 STAP2Q9UGK3 403 aa20■□□□□ 0.79
CLCNKA-203ENST00000439316 TSHZ3Q63HK5 1081 aa19.99■□□□□ 0.79
CLCNKA-203ENST00000439316 CAVIN1Q6NZI2 390 aaKnown RBP19.99■□□□□ 0.79
CLCNKA-203ENST00000439316 IL17RAQ96F46 866 aa19.99■□□□□ 0.79
CLCNKA-203ENST00000439316 BABAM1Q9NWV8 329 aa19.99■□□□□ 0.79
CLCNKA-203ENST00000439316 NAP1L5Q96NT1 182 aaPredicted RBP19.99■□□□□ 0.79
CLCNKA-203ENST00000439316 CHMLP26374 656 aa19.98■□□□□ 0.79
CLCNKA-203ENST00000439316 ANAPC15P60006 121 aa19.98■□□□□ 0.79
CLCNKA-203ENST00000439316 TMX3Q96JJ7 454 aa19.98■□□□□ 0.79
CLCNKA-203ENST00000439316 NCAPD2Q15021 1401 aa19.98■□□□□ 0.79
CLCNKA-203ENST00000439316 ABCA3Q99758 1704 aa19.98■□□□□ 0.79
CLCNKA-203ENST00000439316 AOX1Q06278 1338 aa19.98■□□□□ 0.79
CLCNKA-203ENST00000439316 CAMTA1Q9Y6Y1 1673 aa19.98■□□□□ 0.79
CLCNKA-203ENST00000439316 MCCP23508 829 aa19.97■□□□□ 0.79
CLCNKA-203ENST00000439316 NEK4P51957 841 aa19.97■□□□□ 0.79
CLCNKA-203ENST00000439316 CUL4AQ13619 759 aa19.97■□□□□ 0.79
CLCNKA-203ENST00000439316 SRCIN1Q9C0H9 1055 aa19.97■□□□□ 0.79
CLCNKA-203ENST00000439316 GPT2Q8TD30 523 aa19.97■□□□□ 0.79
CLCNKA-203ENST00000439316 LRRFIP2Q9Y608 721 aaKnown RBP19.97■□□□□ 0.79
CLCNKA-203ENST00000439316 NCLP19338 710 aaKnown RBP19.96■□□□□ 0.79
CLCNKA-203ENST00000439316 ANP32BQ92688 251 aaKnown RBP19.96■□□□□ 0.79
CLCNKA-203ENST00000439316 PRDM11Q9NQV5 511 aa19.96■□□□□ 0.79
CLCNKA-203ENST00000439316 ABCC6O95255 1503 aa19.96■□□□□ 0.79
CLCNKA-203ENST00000439316 PRPF40AO75400 957 aaKnown RBP19.95■□□□□ 0.78
CLCNKA-203ENST00000439316 IL17REQ8NFR9 667 aa19.95■□□□□ 0.78
CLCNKA-203ENST00000439316 NLRP2Q9NX02 1062 aa19.95■□□□□ 0.78
CLCNKA-203ENST00000439316 PALD1Q9ULE6 856 aa19.95■□□□□ 0.78
CLCNKA-203ENST00000439316 CSB-PGBD3P0DP91 1061 aa19.95■□□□□ 0.78
CLCNKA-203ENST00000439316 TAF7Q15545 349 aaPredicted RBP19.94■□□□□ 0.78
CLCNKA-203ENST00000439316 NECTIN2Q92692 538 aa19.94■□□□□ 0.78
CLCNKA-203ENST00000439316 USP44Q9H0E7 712 aa19.94■□□□□ 0.78
CLCNKA-203ENST00000439316 LMO7Q8WWI1 1683 aa19.94■□□□□ 0.78
CLCNKA-203ENST00000439316 AHDC1Q5TGY3 1603 aaPredicted RBP19.94■□□□□ 0.78
CLCNKA-203ENST00000439316 EPB41L2O43491 1005 aaKnown RBP19.94■□□□□ 0.78
CLCNKA-203ENST00000439316 BRD1O95696 1058 aa19.94■□□□□ 0.78
CLCNKA-203ENST00000439316 INTS4Q96HW7 963 aaKnown RBP19.94■□□□□ 0.78
CLCNKA-203ENST00000439316 SSH3Q8TE77 659 aa19.93■□□□□ 0.78
CLCNKA-203ENST00000439316 RILPL2Q969X0 211 aa19.93■□□□□ 0.78
CLCNKA-203ENST00000439316 ANO2Q9NQ90 1003 aa19.93■□□□□ 0.78
CLCNKA-203ENST00000439316 TRIM6-TRIM34B2RNG4 842 aa19.92■□□□□ 0.78
CLCNKA-203ENST00000439316 RBSNQ9H1K0 784 aa19.92■□□□□ 0.78
CLCNKA-203ENST00000439316 UBTFL1P0CB47 393 aaPredicted RBP19.92■□□□□ 0.78
CLCNKA-203ENST00000439316 PRKCSHP14314 528 aaPredicted RBP19.92■□□□□ 0.78
CLCNKA-203ENST00000439316 PLEKHO1Q53GL0 409 aaPredicted RBP19.92■□□□□ 0.78
CLCNKA-203ENST00000439316 ZSCAN30Q86W11 494 aa19.92■□□□□ 0.78
CLCNKA-203ENST00000439316 UNC5CLQ8IV45 518 aa19.92■□□□□ 0.78
CLCNKA-203ENST00000439316 RBM27Q9P2N5 1060 aaKnown RBP19.91■□□□□ 0.78
CLCNKA-203ENST00000439316 PRIM1P49642 420 aaKnown RBP19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 AMOTQ4VCS5 1084 aa19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 AEBP2Q6ZN18 517 aaPredicted RBP19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 CEMIPQ8WUJ3 1361 aa19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 RAB11FIP3O75154 756 aa19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 MBD3O95983 291 aa19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 POLA2Q14181 598 aa19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 HDGFL1Q5TGJ6 251 aa19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 ZNF530Q6P9A1 599 aaPredicted RBP19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 CHAMP1Q96JM3 812 aa19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 PDLIM2Q96JY6 352 aa19.9■□□□□ 0.78
CLCNKA-203ENST00000439316 TOM1O60784 492 aa19.89■□□□□ 0.77
CLCNKA-203ENST00000439316 HS1BP3Q53T59 392 aa19.89■□□□□ 0.77
CLCNKA-203ENST00000439316 TMEM63CQ9P1W3 806 aa19.89■□□□□ 0.77
CLCNKA-203ENST00000439316 KDM3BQ7LBC6 1761 aa19.89■□□□□ 0.77
CLCNKA-203ENST00000439316 PIP4K2BP78356 416 aa19.88■□□□□ 0.77
CLCNKA-203ENST00000439316 LRSAM1Q6UWE0 723 aa19.88■□□□□ 0.77
CLCNKA-203ENST00000439316 RAPGEF4Q8WZA2 1011 aa19.88■□□□□ 0.77
CLCNKA-203ENST00000439316 HSPA4P34932 840 aa19.87■□□□□ 0.77
CLCNKA-203ENST00000439316 AKAP4Q5JQC9 854 aa19.87■□□□□ 0.77
CLCNKA-203ENST00000439316 IL25Q9H293 177 aa19.87■□□□□ 0.77
CLCNKA-203ENST00000439316 PHAXQ9H814 394 aaKnown RBP19.87■□□□□ 0.77
CLCNKA-203ENST00000439316 NSFL1CQ9UNZ2 370 aaKnown RBP19.87■□□□□ 0.77
CLCNKA-203ENST00000439316 PHLPP1O60346 1717 aa19.86■□□□□ 0.77
CLCNKA-203ENST00000439316 IL1RAPL2Q9NP60 686 aa19.86■□□□□ 0.77
CLCNKA-203ENST00000439316 COL5A2P05997 1499 aaPredicted RBP19.86■□□□□ 0.77
CLCNKA-203ENST00000439316 WDR17Q8IZU2 1322 aa19.86■□□□□ 0.77
CLCNKA-203ENST00000439316 FOXD4L5Q5VV16 416 aaPredicted RBP19.86■□□□□ 0.77
CLCNKA-203ENST00000439316 PPP1R42Q7Z4L9 355 aa19.86■□□□□ 0.77
CLCNKA-203ENST00000439316 PI4K2BQ8TCG2 481 aa19.86■□□□□ 0.77
CLCNKA-203ENST00000439316 FOXD4L4Q8WXT5 416 aaPredicted RBP19.86■□□□□ 0.77
CLCNKA-203ENST00000439316 LGR6Q9HBX8 967 aa19.86■□□□□ 0.77
CLCNKA-203ENST00000439316 MEGF6O75095 1541 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms