RNA–Protein interactions for RNA: ENST00000438518.5

HDAC6-208, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 610 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-208ENST00000438518 PROM2Q8N271 834 aa23.71■■□□□ 1.39
HDAC6-208ENST00000438518 CYP19A1P11511 503 aaPredicted RBP23.7■■□□□ 1.38
HDAC6-208ENST00000438518 RC3H1Q5TC82 1133 aaKnown RBP23.7■■□□□ 1.38
HDAC6-208ENST00000438518 HDGFL1Q5TGJ6 251 aa23.7■■□□□ 1.38
HDAC6-208ENST00000438518 LRRC4BQ9NT99 713 aa23.7■■□□□ 1.38
HDAC6-208ENST00000438518 VAMP4O75379 141 aa23.69■■□□□ 1.38
HDAC6-208ENST00000438518 CCDC30Q5VVM6 783 aa23.69■■□□□ 1.38
HDAC6-208ENST00000438518 DEFB132Q7Z7B7 95 aa23.69■■□□□ 1.38
HDAC6-208ENST00000438518 TSPYL6Q8N831 410 aa23.69■■□□□ 1.38
HDAC6-208ENST00000438518 USP16Q9Y5T5 823 aa23.69■■□□□ 1.38
HDAC6-208ENST00000438518 QSER1Q2KHR3 1735 aa23.67■■□□□ 1.38
HDAC6-208ENST00000438518 PRAMEF22A3QJZ6 481 aa23.67■■□□□ 1.38
HDAC6-208ENST00000438518 ELL2O00472 640 aaPredicted RBP23.67■■□□□ 1.38
HDAC6-208ENST00000438518 LINC00116Q8NCU8 138 aa23.67■■□□□ 1.38
HDAC6-208ENST00000438518 CCDC87Q9NVE4 849 aa23.66■■□□□ 1.38
HDAC6-208ENST00000438518 DBF4Q9UBU7 674 aaPredicted RBP23.66■■□□□ 1.38
HDAC6-208ENST00000438518 MYH14Q7Z406 1995 aaKnown RBP23.65■■□□□ 1.38
HDAC6-208ENST00000438518 UBR3Q6ZT12 1888 aa23.65■■□□□ 1.38
HDAC6-208ENST00000438518 EIF2S2P20042 333 aaKnown RBP23.65■■□□□ 1.38
HDAC6-208ENST00000438518 CRKLP46109 303 aaKnown RBP23.65■■□□□ 1.38
HDAC6-208ENST00000438518 ALDH1L2Q3SY69 923 aa23.65■■□□□ 1.38
HDAC6-208ENST00000438518 STK31Q9BXU1 1019 aa23.65■■□□□ 1.38
HDAC6-208ENST00000438518 IL6STP40189 918 aaPredicted RBP23.63■■□□□ 1.37
HDAC6-208ENST00000438518 AK7Q96M32 723 aa23.63■■□□□ 1.37
HDAC6-208ENST00000438518 DDX21Q9NR30 783 aaKnown RBP eCLIP23.63■■□□□ 1.37
HDAC6-208ENST00000438518 KCNQ4P56696 695 aa23.62■■□□□ 1.37
HDAC6-208ENST00000438518 NBPF14Q5TI25 921 aa23.61■■□□□ 1.37
HDAC6-208ENST00000438518 INTS5Q6P9B9 1019 aaKnown RBP23.61■■□□□ 1.37
HDAC6-208ENST00000438518 HYPKQ9NX55 129 aa23.61■■□□□ 1.37
HDAC6-208ENST00000438518 ZBTB1Q9Y2K1 713 aa23.61■■□□□ 1.37
HDAC6-208ENST00000438518 RPS6KA4O75676 772 aa23.6■■□□□ 1.37
HDAC6-208ENST00000438518 A1BGP04217 495 aa23.6■■□□□ 1.37
HDAC6-208ENST00000438518 ADRA2BP18089 450 aa23.6■■□□□ 1.37
HDAC6-208ENST00000438518 NPM2Q86SE8 214 aaKnown RBP23.6■■□□□ 1.37
HDAC6-208ENST00000438518 AKT1S1Q96B36 256 aa23.6■■□□□ 1.37
HDAC6-208ENST00000438518 RTCBQ9Y3I0 505 aaKnown RBP23.6■■□□□ 1.37
HDAC6-208ENST00000438518 TUBGCP6Q96RT7 1819 aa23.59■■□□□ 1.37
HDAC6-208ENST00000438518 SSFA2P28290 1259 aa23.59■■□□□ 1.37
HDAC6-208ENST00000438518 FLAD1Q8NFF5 587 aa23.59■■□□□ 1.37
HDAC6-208ENST00000438518 STK32BQ9NY57 414 aa23.59■■□□□ 1.37
HDAC6-208ENST00000438518 CHPF2Q9P2E5 772 aa23.59■■□□□ 1.37
HDAC6-208ENST00000438518 GNPATO15228 680 aa23.58■■□□□ 1.37
HDAC6-208ENST00000438518 BRPF1P55201 1214 aaPredicted RBP23.58■■□□□ 1.37
HDAC6-208ENST00000438518 A0A087WZG4 1122 aa23.57■■□□□ 1.36
HDAC6-208ENST00000438518 SOCS7O14512 581 aa23.57■■□□□ 1.36
HDAC6-208ENST00000438518 CANXP27824 592 aaKnown RBP23.57■■□□□ 1.36
HDAC6-208ENST00000438518 RARSP54136 660 aaKnown RBP23.57■■□□□ 1.36
HDAC6-208ENST00000438518 EIF5P55010 431 aaKnown RBP23.57■■□□□ 1.36
HDAC6-208ENST00000438518 PDIA6Q15084 440 aa23.57■■□□□ 1.36
HDAC6-208ENST00000438518 NECTIN2Q92692 538 aa23.57■■□□□ 1.36
HDAC6-208ENST00000438518 C4AP0C0L4 1744 aa23.56■■□□□ 1.36
HDAC6-208ENST00000438518 COL15A1P39059 1388 aa23.56■■□□□ 1.36
HDAC6-208ENST00000438518 NBPF26B4DH59 902 aa23.56■■□□□ 1.36
HDAC6-208ENST00000438518 SLC15A2Q16348 729 aa23.56■■□□□ 1.36
HDAC6-208ENST00000438518 NBPF10Q6P3W6 841 aaKnown RBP23.56■■□□□ 1.36
HDAC6-208ENST00000438518 NBPF15Q8N660 670 aa23.56■■□□□ 1.36
HDAC6-208ENST00000438518 SLC4A2P04920 1241 aa23.55■■□□□ 1.36
HDAC6-208ENST00000438518 ZNF827Q17R98 1081 aa23.55■■□□□ 1.36
HDAC6-208ENST00000438518 SSH1Q8WYL5 1049 aa23.55■■□□□ 1.36
HDAC6-208ENST00000438518 SMC4Q9NTJ3 1288 aa23.55■■□□□ 1.36
HDAC6-208ENST00000438518 TFCP2L1Q9NZI6 479 aa23.55■■□□□ 1.36
HDAC6-208ENST00000438518 KIF16BQ96L93 1317 aa23.55■■□□□ 1.36
HDAC6-208ENST00000438518 RGL2O15211 777 aa23.54■■□□□ 1.36
HDAC6-208ENST00000438518 LRP10Q7Z4F1 713 aa23.54■■□□□ 1.36
HDAC6-208ENST00000438518 RCAN3Q9UKA8 241 aa23.54■■□□□ 1.36
HDAC6-208ENST00000438518 BCORQ6W2J9 1755 aa23.54■■□□□ 1.36
HDAC6-208ENST00000438518 SCN7AQ01118 1682 aa23.54■■□□□ 1.36
HDAC6-208ENST00000438518 MYL6BP14649 208 aa23.53■■□□□ 1.36
HDAC6-208ENST00000438518 PROSER3Q2NL68 480 aa23.52■■□□□ 1.36
HDAC6-208ENST00000438518 TRAPPC3LQ5T215 181 aa23.52■■□□□ 1.36
HDAC6-208ENST00000438518 MRPL50Q8N5N7 158 aaKnown RBP23.52■■□□□ 1.36
HDAC6-208ENST00000438518 ANO8Q9HCE9 1232 aaPredicted RBP23.52■■□□□ 1.36
HDAC6-208ENST00000438518 PTPRCP08575 1304 aa23.52■■□□□ 1.36
HDAC6-208ENST00000438518 DDX58O95786 925 aaKnown RBP23.51■■□□□ 1.35
HDAC6-208ENST00000438518 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.5■■□□□ 1.35
HDAC6-208ENST00000438518 KIF6Q6ZMV9 814 aa23.5■■□□□ 1.35
HDAC6-208ENST00000438518 ANXA1P04083 346 aa23.49■■□□□ 1.35
HDAC6-208ENST00000438518 CENPBP07199 599 aaPredicted RBP23.49■■□□□ 1.35
HDAC6-208ENST00000438518 PIP4K2AP48426 406 aaPredicted RBP23.49■■□□□ 1.35
HDAC6-208ENST00000438518 FLIIQ13045 1269 aa23.49■■□□□ 1.35
HDAC6-208ENST00000438518 COPS6Q7L5N1 327 aa23.49■■□□□ 1.35
HDAC6-208ENST00000438518 ZNF330Q9Y3S2 320 aaPredicted RBP23.49■■□□□ 1.35
HDAC6-208ENST00000438518 ARFGEF2Q9Y6D5 1785 aa23.49■■□□□ 1.35
HDAC6-208ENST00000438518 TCERG1O14776 1098 aaKnown RBP23.48■■□□□ 1.35
HDAC6-208ENST00000438518 RFC4P35249 363 aa23.48■■□□□ 1.35
HDAC6-208ENST00000438518 DZIP3Q86Y13 1208 aaKnown RBP23.48■■□□□ 1.35
HDAC6-208ENST00000438518 XAGE3Q8WTP9 111 aa23.48■■□□□ 1.35
HDAC6-208ENST00000438518 ARHGAP45Q92619 1136 aa23.48■■□□□ 1.35
HDAC6-208ENST00000438518 ERVV-1B6SEH8 477 aa23.47■■□□□ 1.35
HDAC6-208ENST00000438518 IPO8O15397 1037 aaKnown RBP23.47■■□□□ 1.35
HDAC6-208ENST00000438518 ARHGEF1Q92888 912 aaKnown RBP23.47■■□□□ 1.35
HDAC6-208ENST00000438518 BCL2L13Q9BXK5 485 aa23.47■■□□□ 1.35
HDAC6-208ENST00000438518 PHAXQ9H814 394 aaKnown RBP23.47■■□□□ 1.35
HDAC6-208ENST00000438518 NARFQ9UHQ1 456 aa23.47■■□□□ 1.35
HDAC6-208ENST00000438518 PNPLA7Q6ZV29 1317 aa23.47■■□□□ 1.35
HDAC6-208ENST00000438518 ANKRD36CQ5JPF3 1778 aa23.47■■□□□ 1.35
HDAC6-208ENST00000438518 PHF14O94880 888 aa23.46■■□□□ 1.35
HDAC6-208ENST00000438518 MAP3K15Q6ZN16 1313 aa23.46■■□□□ 1.35
HDAC6-208ENST00000438518 PLBD2Q8NHP8 589 aa23.46■■□□□ 1.35
HDAC6-208ENST00000438518 USP42Q9H9J4 1324 aaKnown RBP23.46■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms