RNA–Protein interactions for RNA: ENST00000426280.3

GPC1-204, Transcript of glypican 1, humanhuman

TSL 3

Gene GPC1, Length 636 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-204ENST00000426280 DDR1Q08345 913 aa16.94■□□□□ 0.3
GPC1-204ENST00000426280 GPR162Q16538 588 aa16.94■□□□□ 0.3
GPC1-204ENST00000426280 CCDC184Q52MB2 194 aa16.94■□□□□ 0.3
GPC1-204ENST00000426280 USPL1Q5W0Q7 1092 aa16.94■□□□□ 0.3
GPC1-204ENST00000426280 PELP1Q8IZL8 1130 aaKnown RBP16.94■□□□□ 0.3
GPC1-204ENST00000426280 NLGN1Q8N2Q7 840 aa16.94■□□□□ 0.3
GPC1-204ENST00000426280 HTATSF1O43719 755 aaKnown RBP16.93■□□□□ 0.3
GPC1-204ENST00000426280 YY1P25490 414 aa16.93■□□□□ 0.3
GPC1-204ENST00000426280 NFE2L2Q16236 605 aa16.93■□□□□ 0.3
GPC1-204ENST00000426280 CCDC146Q8IYE0 955 aa16.93■□□□□ 0.3
GPC1-204ENST00000426280 RTF1Q92541 710 aaKnown RBP16.93■□□□□ 0.3
GPC1-204ENST00000426280 TM4SF1P30408 202 aa16.92■□□□□ 0.3
GPC1-204ENST00000426280 FMNL2Q96PY5 1086 aa16.92■□□□□ 0.3
GPC1-204ENST00000426280 DLG5Q8TDM6 1919 aa16.92■□□□□ 0.3
GPC1-204ENST00000426280 DCAF8L1A6NGE4 600 aa16.91■□□□□ 0.3
GPC1-204ENST00000426280 EIF5P55010 431 aaKnown RBP16.91■□□□□ 0.3
GPC1-204ENST00000426280 TAF7Q15545 349 aaPredicted RBP16.91■□□□□ 0.3
GPC1-204ENST00000426280 ADAMTS8Q9UP79 889 aa16.91■□□□□ 0.3
GPC1-204ENST00000426280 RRP7AQ9Y3A4 280 aaKnown RBP16.91■□□□□ 0.3
GPC1-204ENST00000426280 NARFQ9UHQ1 456 aa16.9■□□□□ 0.3
GPC1-204ENST00000426280 COL15A1P39059 1388 aa16.89■□□□□ 0.3
GPC1-204ENST00000426280 A0A0G2JLW4 131 aa16.89■□□□□ 0.29
GPC1-204ENST00000426280 TBC1D2BQ9UPU7 963 aa16.89■□□□□ 0.29
GPC1-204ENST00000426280 KIAA1551Q9HCM1 1747 aa16.88■□□□□ 0.29
GPC1-204ENST00000426280 POLRMTO00411 1230 aaKnown RBP16.88■□□□□ 0.29
GPC1-204ENST00000426280 STARD3NLO95772 234 aa16.88■□□□□ 0.29
GPC1-204ENST00000426280 TMPOP42166 694 aaKnown RBP16.88■□□□□ 0.29
GPC1-204ENST00000426280 RIPK4P57078 832 aa16.88■□□□□ 0.29
GPC1-204ENST00000426280 NFIXQ14938 502 aa16.88■□□□□ 0.29
GPC1-204ENST00000426280 NBPF26B4DH59 902 aa16.87■□□□□ 0.29
GPC1-204ENST00000426280 KCNA3P22001 575 aa16.87■□□□□ 0.29
GPC1-204ENST00000426280 NBPF10Q6P3W6 841 aaKnown RBP16.87■□□□□ 0.29
GPC1-204ENST00000426280 NBPF15Q8N660 670 aa16.87■□□□□ 0.29
GPC1-204ENST00000426280 PARP3Q9Y6F1 533 aa16.87■□□□□ 0.29
GPC1-204ENST00000426280 ZPR1O75312 459 aa16.86■□□□□ 0.29
GPC1-204ENST00000426280 DPEP1P16444 411 aa16.86■□□□□ 0.29
GPC1-204ENST00000426280 NEUROD2Q15784 382 aa16.86■□□□□ 0.29
GPC1-204ENST00000426280 TEX13AQ9BXU3 409 aaPredicted RBP16.86■□□□□ 0.29
GPC1-204ENST00000426280 ZNF330Q9Y3S2 320 aaPredicted RBP16.86■□□□□ 0.29
GPC1-204ENST00000426280 MAPK8IP3Q9UPT6 1336 aa16.86■□□□□ 0.29
GPC1-204ENST00000426280 C10orf71Q711Q0 1435 aa16.86■□□□□ 0.29
GPC1-204ENST00000426280 PXDNLA1KZ92 1463 aa16.86■□□□□ 0.29
GPC1-204ENST00000426280 SNRPA1P09661 255 aaKnown RBP16.85■□□□□ 0.29
GPC1-204ENST00000426280 EIF4A1P60842 406 aaKnown RBP16.85■□□□□ 0.29
GPC1-204ENST00000426280 TRIM35Q9UPQ4 493 aa16.85■□□□□ 0.29
GPC1-204ENST00000426280 NEFMP07197 916 aa16.84■□□□□ 0.29
GPC1-204ENST00000426280 IL6STP40189 918 aaPredicted RBP16.84■□□□□ 0.29
GPC1-204ENST00000426280 TBC1D9BQ66K14 1250 aa16.84■□□□□ 0.29
GPC1-204ENST00000426280 BICDL1Q6ZP65 573 aa16.84■□□□□ 0.29
GPC1-204ENST00000426280 N4BP2Q86UW6 1770 aaPredicted RBP16.84■□□□□ 0.29
GPC1-204ENST00000426280 SENP3-EIF4A1A0A087X0R7 540 aa16.83■□□□□ 0.28
GPC1-204ENST00000426280 GIGYF1O75420 1035 aaPredicted RBP16.83■□□□□ 0.28
GPC1-204ENST00000426280 CHRNA5P30532 468 aa16.83■□□□□ 0.28
GPC1-204ENST00000426280 RUNDC1Q96C34 613 aa16.83■□□□□ 0.28
GPC1-204ENST00000426280 PNNQ9H307 717 aaKnown RBP16.83■□□□□ 0.28
GPC1-204ENST00000426280 KIF13BQ9NQT8 1826 aa16.83■□□□□ 0.28
GPC1-204ENST00000426280 CAMTA2O94983 1202 aa16.82■□□□□ 0.28
GPC1-204ENST00000426280 SERPINB2P05120 415 aa16.82■□□□□ 0.28
GPC1-204ENST00000426280 CCDC24Q8N4L8 307 aa16.82■□□□□ 0.28
GPC1-204ENST00000426280 KDM3BQ7LBC6 1761 aa16.82■□□□□ 0.28
GPC1-204ENST00000426280 UTRNP46939 3433 aa16.81■□□□□ 0.28
GPC1-204ENST00000426280 TGFB2P61812 414 aa16.81■□□□□ 0.28
GPC1-204ENST00000426280 WDR43Q15061 677 aaKnown RBP eCLIP16.81■□□□□ 0.28
GPC1-204ENST00000426280 CARMIL3Q8ND23 1372 aa16.8■□□□□ 0.28
GPC1-204ENST00000426280 KRT24Q2M2I5 525 aa16.8■□□□□ 0.28
GPC1-204ENST00000426280 ZNF784Q8NCA9 323 aaPredicted RBP16.8■□□□□ 0.28
GPC1-204ENST00000426280 A0A087WZG4 1122 aa16.79■□□□□ 0.28
GPC1-204ENST00000426280 GRIN3BO60391 1043 aa16.79■□□□□ 0.28
GPC1-204ENST00000426280 DZIP3Q86Y13 1208 aaKnown RBP16.79■□□□□ 0.28
GPC1-204ENST00000426280 PNISRQ8TF01 805 aaKnown RBP16.79■□□□□ 0.28
GPC1-204ENST00000426280 AFDNP55196 1824 aaKnown RBP16.79■□□□□ 0.28
GPC1-204ENST00000426280 APAF1O14727 1248 aa16.78■□□□□ 0.28
GPC1-204ENST00000426280 HLFQ16534 295 aa16.78■□□□□ 0.28
GPC1-204ENST00000426280 NGEFQ8N5V2 710 aa16.78■□□□□ 0.28
GPC1-204ENST00000426280 TSPYL4Q9UJ04 414 aa16.78■□□□□ 0.28
GPC1-204ENST00000426280 BCS1LQ9Y276 419 aa16.78■□□□□ 0.28
GPC1-204ENST00000426280 GOLGB1Q14789 3259 aaKnown RBP16.78■□□□□ 0.28
GPC1-204ENST00000426280 NRXN2Q9P2S2 1712 aa16.76■□□□□ 0.27
GPC1-204ENST00000426280 CHL1O00533 1208 aa16.76■□□□□ 0.27
GPC1-204ENST00000426280 TTLL7Q6ZT98 887 aa16.76■□□□□ 0.27
GPC1-204ENST00000426280 CHD4Q14839 1912 aa16.76■□□□□ 0.27
GPC1-204ENST00000426280 SCN7AQ01118 1682 aa16.75■□□□□ 0.27
GPC1-204ENST00000426280 ANXA1P04083 346 aa16.75■□□□□ 0.27
GPC1-204ENST00000426280 PDIA6Q15084 440 aa16.75■□□□□ 0.27
GPC1-204ENST00000426280 PROSER3Q2NL68 480 aa16.75■□□□□ 0.27
GPC1-204ENST00000426280 LRP10Q7Z4F1 713 aa16.75■□□□□ 0.27
GPC1-204ENST00000426280 MYL6BP14649 208 aa16.74■□□□□ 0.27
GPC1-204ENST00000426280 PRR5LQ6MZQ0 368 aa16.74■□□□□ 0.27
GPC1-204ENST00000426280 NECTIN2Q92692 538 aa16.74■□□□□ 0.27
GPC1-204ENST00000426280 LAS1LQ9Y4W2 734 aaKnown RBP16.74■□□□□ 0.27
GPC1-204ENST00000426280 EIF2S2P20042 333 aaKnown RBP16.73■□□□□ 0.27
GPC1-204ENST00000426280 PIM2Q9P1W9 311 aa16.73■□□□□ 0.27
GPC1-204ENST00000426280 BRCA1P38398 1863 aaKnown RBP16.73■□□□□ 0.27
GPC1-204ENST00000426280 BCORQ6W2J9 1755 aa16.72■□□□□ 0.27
GPC1-204ENST00000426280 LMOD3Q0VAK6 560 aa16.72■□□□□ 0.27
GPC1-204ENST00000426280 ARHGAP27Q6ZUM4 889 aa16.72■□□□□ 0.27
GPC1-204ENST00000426280 LAMB4A4D0S4 1761 aa16.72■□□□□ 0.27
GPC1-204ENST00000426280 C2CD5Q86YS7 1000 aa16.71■□□□□ 0.27
GPC1-204ENST00000426280 SETDB2Q96T68 719 aa16.71■□□□□ 0.27
GPC1-204ENST00000426280 BABAM1Q9NWV8 329 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms