RNA–Protein interactions for RNA: ENST00000420813.5

MSH6-203, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 491 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-203ENST00000420813 TEFQ10587 303 aa23.31■■□□□ 1.32
MSH6-203ENST00000420813 USPL1Q5W0Q7 1092 aa23.31■■□□□ 1.32
MSH6-203ENST00000420813 IL17REQ8NFR9 667 aa23.31■■□□□ 1.32
MSH6-203ENST00000420813 NARFQ9UHQ1 456 aa23.31■■□□□ 1.32
MSH6-203ENST00000420813 ZBTB1Q9Y2K1 713 aa23.31■■□□□ 1.32
MSH6-203ENST00000420813 POLRMTO00411 1230 aaKnown RBP23.3■■□□□ 1.32
MSH6-203ENST00000420813 KCNA3P22001 575 aa23.3■■□□□ 1.32
MSH6-203ENST00000420813 CEMIPQ8WUJ3 1361 aa23.29■■□□□ 1.32
MSH6-203ENST00000420813 FCHSD2O94868 740 aa23.29■■□□□ 1.32
MSH6-203ENST00000420813 STARD3NLO95772 234 aa23.28■■□□□ 1.32
MSH6-203ENST00000420813 ZNF790Q6PG37 636 aa23.28■■□□□ 1.32
MSH6-203ENST00000420813 RSPH6AQ9H0K4 717 aa23.28■■□□□ 1.32
MSH6-203ENST00000420813 PIM2Q9P1W9 311 aa23.28■■□□□ 1.32
MSH6-203ENST00000420813 NUDCQ9Y266 331 aa23.28■■□□□ 1.32
MSH6-203ENST00000420813 HEG1Q9ULI3 1381 aa23.27■■□□□ 1.32
MSH6-203ENST00000420813 DLEC1Q9Y238 1755 aa23.27■■□□□ 1.32
MSH6-203ENST00000420813 PRKAR2BP31323 418 aa23.27■■□□□ 1.32
MSH6-203ENST00000420813 ZNF526Q8TF50 670 aaPredicted RBP23.27■■□□□ 1.32
MSH6-203ENST00000420813 TEX13AQ9BXU3 409 aaPredicted RBP23.27■■□□□ 1.32
MSH6-203ENST00000420813 PPP2R1AP30153 589 aa23.26■■□□□ 1.31
MSH6-203ENST00000420813 ZNF496Q96IT1 587 aaPredicted RBP23.26■■□□□ 1.31
MSH6-203ENST00000420813 SCN7AQ01118 1682 aa23.25■■□□□ 1.31
MSH6-203ENST00000420813 ARHGAP27Q6ZUM4 889 aa23.25■■□□□ 1.31
MSH6-203ENST00000420813 PHACTR3Q96KR7 559 aa23.25■■□□□ 1.31
MSH6-203ENST00000420813 CANXP27824 592 aaKnown RBP23.24■■□□□ 1.31
MSH6-203ENST00000420813 EIF5P55010 431 aaKnown RBP23.24■■□□□ 1.31
MSH6-203ENST00000420813 NFIXQ14938 502 aa23.24■■□□□ 1.31
MSH6-203ENST00000420813 BCL2L12Q9HB09 334 aa23.24■■□□□ 1.31
MSH6-203ENST00000420813 SBF1O95248 1867 aa23.24■■□□□ 1.31
MSH6-203ENST00000420813 A0A087WZG4 1122 aa23.23■■□□□ 1.31
MSH6-203ENST00000420813 DALRD3Q5D0E6 543 aaKnown RBP23.23■■□□□ 1.31
MSH6-203ENST00000420813 FMNL2Q96PY5 1086 aa23.23■■□□□ 1.31
MSH6-203ENST00000420813 U2AF1L5P0DN76 240 aaPredicted RBP23.21■■□□□ 1.31
MSH6-203ENST00000420813 CHRNA5P30532 468 aa23.21■■□□□ 1.31
MSH6-203ENST00000420813 U2AF1Q01081 240 aaKnown RBP eCLIP23.21■■□□□ 1.31
MSH6-203ENST00000420813 BTBD11A6QL63 1104 aa23.19■■□□□ 1.3
MSH6-203ENST00000420813 KIF3CO14782 793 aa23.19■■□□□ 1.3
MSH6-203ENST00000420813 SERPINB2P05120 415 aa23.19■■□□□ 1.3
MSH6-203ENST00000420813 IL6STP40189 918 aaPredicted RBP23.19■■□□□ 1.3
MSH6-203ENST00000420813 BCORQ6W2J9 1755 aa23.19■■□□□ 1.3
MSH6-203ENST00000420813 DLG5Q8TDM6 1919 aa23.18■■□□□ 1.3
MSH6-203ENST00000420813 CEP350Q5VT06 3117 aa23.17■■□□□ 1.3
MSH6-203ENST00000420813 ANKRD31Q8N7Z5 1873 aa23.17■■□□□ 1.3
MSH6-203ENST00000420813 RTF1Q92541 710 aaKnown RBP23.17■■□□□ 1.3
MSH6-203ENST00000420813 HTATSF1O43719 755 aaKnown RBP23.15■■□□□ 1.3
MSH6-203ENST00000420813 C9orf131Q5VYM1 1079 aa23.15■■□□□ 1.3
MSH6-203ENST00000420813 KCNQ3O43525 872 aa23.14■■□□□ 1.29
MSH6-203ENST00000420813 HSPA6P17066 643 aa23.14■■□□□ 1.29
MSH6-203ENST00000420813 NPM2Q86SE8 214 aaKnown RBP23.14■■□□□ 1.29
MSH6-203ENST00000420813 CCDC88AQ3V6T2 1871 aa23.13■■□□□ 1.29
MSH6-203ENST00000420813 A1BGP04217 495 aa23.13■■□□□ 1.29
MSH6-203ENST00000420813 MCM10Q7L590 875 aa23.13■■□□□ 1.29
MSH6-203ENST00000420813 ZNF330Q9Y3S2 320 aaPredicted RBP23.13■■□□□ 1.29
MSH6-203ENST00000420813 CARMIL3Q8ND23 1372 aa23.13■■□□□ 1.29
MSH6-203ENST00000420813 TBC1D9BQ66K14 1250 aa23.12■■□□□ 1.29
MSH6-203ENST00000420813 BICDL1Q6ZP65 573 aa23.12■■□□□ 1.29
MSH6-203ENST00000420813 TBC1D2BQ9UPU7 963 aa23.12■■□□□ 1.29
MSH6-203ENST00000420813 PDZRN3Q9UPQ7 1066 aa23.11■■□□□ 1.29
MSH6-203ENST00000420813 LAMB4A4D0S4 1761 aa23.11■■□□□ 1.29
MSH6-203ENST00000420813 COL11A2P13942 1736 aaPredicted RBP23.11■■□□□ 1.29
MSH6-203ENST00000420813 TNRC6CQ9HCJ0 1690 aaKnown RBP23.1■■□□□ 1.29
MSH6-203ENST00000420813 H0YIN7 160 aa23.1■■□□□ 1.29
MSH6-203ENST00000420813 SNRPA1P09661 255 aaKnown RBP23.1■■□□□ 1.29
MSH6-203ENST00000420813 C2CD5Q86YS7 1000 aa23.1■■□□□ 1.29
MSH6-203ENST00000420813 TTLL6Q8N841 843 aa23.1■■□□□ 1.29
MSH6-203ENST00000420813 RNF181Q9P0P0 153 aa23.1■■□□□ 1.29
MSH6-203ENST00000420813 USP16Q9Y5T5 823 aa23.1■■□□□ 1.29
MSH6-203ENST00000420813 TOMM70O94826 608 aa23.09■■□□□ 1.29
MSH6-203ENST00000420813 CAMTA2O94983 1202 aa23.09■■□□□ 1.29
MSH6-203ENST00000420813 KDM3BQ7LBC6 1761 aa23.09■■□□□ 1.29
MSH6-203ENST00000420813 ZC3H4Q9UPT8 1303 aaKnown RBP23.08■■□□□ 1.29
MSH6-203ENST00000420813 NEFMP07197 916 aa23.08■■□□□ 1.29
MSH6-203ENST00000420813 BRIP1Q9BX63 1249 aa23.08■■□□□ 1.29
MSH6-203ENST00000420813 NMRK2Q9NPI5 230 aa23.08■■□□□ 1.29
MSH6-203ENST00000420813 PDE6BP35913 854 aa23.07■■□□□ 1.28
MSH6-203ENST00000420813 DCTN1Q14203 1278 aa23.07■■□□□ 1.28
MSH6-203ENST00000420813 PRR5LQ6MZQ0 368 aa23.07■■□□□ 1.28
MSH6-203ENST00000420813 DZIP3Q86Y13 1208 aaKnown RBP23.07■■□□□ 1.28
MSH6-203ENST00000420813 SETDB2Q96T68 719 aa23.07■■□□□ 1.28
MSH6-203ENST00000420813 KDM2BQ8NHM5 1336 aa23.07■■□□□ 1.28
MSH6-203ENST00000420813 ARFGEF2Q9Y6D5 1785 aa23.06■■□□□ 1.28
MSH6-203ENST00000420813 TIAM2Q8IVF5 1701 aa23.06■■□□□ 1.28
MSH6-203ENST00000420813 TAF7Q15545 349 aaPredicted RBP23.06■■□□□ 1.28
MSH6-203ENST00000420813 CACNA1SQ13698 1873 aa23.06■■□□□ 1.28
MSH6-203ENST00000420813 FER1L6Q2WGJ9 1857 aa23.06■■□□□ 1.28
MSH6-203ENST00000420813 DICER1Q9UPY3 1922 aaKnown RBP23.06■■□□□ 1.28
MSH6-203ENST00000420813 PRAMEF22A3QJZ6 481 aa23.05■■□□□ 1.28
MSH6-203ENST00000420813 CLEC4GQ6UXB4 293 aa23.05■■□□□ 1.28
MSH6-203ENST00000420813 RGL2O15211 777 aa23.04■■□□□ 1.28
MSH6-203ENST00000420813 LMNB1P20700 586 aa23.04■■□□□ 1.28
MSH6-203ENST00000420813 RASSF7Q02833 373 aa23.04■■□□□ 1.28
MSH6-203ENST00000420813 CNBD1Q8NA66 436 aa23.04■■□□□ 1.28
MSH6-203ENST00000420813 PLEKHF1Q96S99 279 aa23.03■■□□□ 1.28
MSH6-203ENST00000420813 ZNF652Q9Y2D9 606 aa23.03■■□□□ 1.28
MSH6-203ENST00000420813 PIP4K2AP48426 406 aaPredicted RBP23.02■■□□□ 1.28
MSH6-203ENST00000420813 RBM46Q8TBY0 533 aaKnown RBP23.02■■□□□ 1.28
MSH6-203ENST00000420813 PNISRQ8TF01 805 aaKnown RBP23.02■■□□□ 1.28
MSH6-203ENST00000420813 PNNQ9H307 717 aaKnown RBP23.02■■□□□ 1.28
MSH6-203ENST00000420813 ST5P78524 1137 aa23.01■■□□□ 1.27
MSH6-203ENST00000420813 ZNF622Q969S3 477 aaKnown RBP eCLIP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms