RNA–Protein interactions for RNA: ENST00000393118.6

CALD1-203, Transcript of caldesmon 1, humanhuman

TSL 1 (best) BASIC

Gene CALD1, Length 4,281 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-203ENST00000393118 CDK12Q9NYV4 1490 aaPredicted RBP12.66□□□□□ -0.38
CALD1-203ENST00000393118 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.66□□□□□ -0.38
CALD1-203ENST00000393118 HTATSF1O43719 755 aaKnown RBP12.66□□□□□ -0.38
CALD1-203ENST00000393118 ESYT1Q9BSJ8 1104 aa12.66□□□□□ -0.38
CALD1-203ENST00000393118 BOLA2Q9H3K6 86 aa12.66□□□□□ -0.38
CALD1-203ENST00000393118 KCNQ3O43525 872 aa12.66□□□□□ -0.38
CALD1-203ENST00000393118 CABP4P57796 275 aa12.66□□□□□ -0.38
CALD1-203ENST00000393118 CWF19L2Q2TBE0 894 aaKnown RBP12.66□□□□□ -0.38
CALD1-203ENST00000393118 SYTL4Q96C24 671 aaPredicted RBP12.66□□□□□ -0.38
CALD1-203ENST00000393118 JAKMIP1Q96N16 626 aaKnown RBP12.66□□□□□ -0.38
CALD1-203ENST00000393118 RAB11FIP3O75154 756 aa12.65□□□□□ -0.38
CALD1-203ENST00000393118 ZRSR1Q15695 479 aaKnown RBP12.65□□□□□ -0.38
CALD1-203ENST00000393118 MPNDQ8N594 471 aa12.65□□□□□ -0.38
CALD1-203ENST00000393118 CABLES1Q8TDN4 633 aa12.65□□□□□ -0.38
CALD1-203ENST00000393118 RAB3GAP1Q15042 981 aa12.65□□□□□ -0.38
CALD1-203ENST00000393118 IP6K1Q92551 441 aa12.65□□□□□ -0.38
CALD1-203ENST00000393118 TMX3Q96JJ7 454 aa12.65□□□□□ -0.38
CALD1-203ENST00000393118 BCL11BQ9C0K0 894 aaPredicted RBP12.65□□□□□ -0.38
CALD1-203ENST00000393118 CASTP20810 708 aaKnown RBP12.65□□□□□ -0.38
CALD1-203ENST00000393118 CHAF1AQ13111 956 aaPredicted RBP12.65□□□□□ -0.38
CALD1-203ENST00000393118 ERC1Q8IUD2 1116 aa12.65□□□□□ -0.38
CALD1-203ENST00000393118 MYD88Q99836 296 aa12.65□□□□□ -0.38
CALD1-203ENST00000393118 ATP6V1DQ9Y5K8 247 aa12.65□□□□□ -0.38
CALD1-203ENST00000393118 GLRX3O76003 335 aaKnown RBP12.65□□□□□ -0.39
CALD1-203ENST00000393118 RNF20Q5VTR2 975 aa12.65□□□□□ -0.39
CALD1-203ENST00000393118 PRPF40BQ6NWY9 871 aaKnown RBP12.65□□□□□ -0.39
CALD1-203ENST00000393118 KIAA0232Q92628 1395 aa12.64□□□□□ -0.39
CALD1-203ENST00000393118 PTCD1O75127 700 aaKnown RBP12.64□□□□□ -0.39
CALD1-203ENST00000393118 PHF14O94880 888 aa12.64□□□□□ -0.39
CALD1-203ENST00000393118 NBPF7P0C2Y1 421 aaPredicted RBP12.64□□□□□ -0.39
CALD1-203ENST00000393118 TOM1L2Q6ZVM7 507 aa12.64□□□□□ -0.39
CALD1-203ENST00000393118 STK3Q13188 491 aa12.64□□□□□ -0.39
CALD1-203ENST00000393118 NEURL4Q96JN8 1562 aa12.64□□□□□ -0.39
CALD1-203ENST00000393118 TNNT3P45378 269 aaPredicted RBP12.64□□□□□ -0.39
CALD1-203ENST00000393118 KIAA2012Q0VF49 1180 aa12.64□□□□□ -0.39
CALD1-203ENST00000393118 DRC7Q8IY82 874 aa12.64□□□□□ -0.39
CALD1-203ENST00000393118 RBM27Q9P2N5 1060 aaKnown RBP12.64□□□□□ -0.39
CALD1-203ENST00000393118 PLEKHG1Q9ULL1 1385 aa12.64□□□□□ -0.39
CALD1-203ENST00000393118 SYCE3A1L190 88 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 H3BQV1 296 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 DTNBO60941 627 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 IFFO2Q5TF58 517 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 PRDM11Q9NQV5 511 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.63□□□□□ -0.39
CALD1-203ENST00000393118 ATP5J2-PTCD1G3V325 749 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 ARHGEF10O15013 1369 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 CPSF1Q10570 1443 aaKnown RBP12.63□□□□□ -0.39
CALD1-203ENST00000393118 MED14O60244 1454 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 AKAP4Q5JQC9 854 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 FAM184AQ8NB25 1140 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 CCDC85AQ96PX6 553 aaPredicted RBP12.63□□□□□ -0.39
CALD1-203ENST00000393118 CD163L1Q9NR16 1453 aa12.63□□□□□ -0.39
CALD1-203ENST00000393118 CYP46A1Q9Y6A2 500 aa12.62□□□□□ -0.39
CALD1-203ENST00000393118 USP44Q9H0E7 712 aa12.62□□□□□ -0.39
CALD1-203ENST00000393118 CPS1P31327 1500 aa12.62□□□□□ -0.39
CALD1-203ENST00000393118 CHMLP26374 656 aa12.62□□□□□ -0.39
CALD1-203ENST00000393118 SOS1Q07889 1333 aaPredicted RBP12.62□□□□□ -0.39
CALD1-203ENST00000393118 MBD3O95983 291 aa12.62□□□□□ -0.39
CALD1-203ENST00000393118 CCDC83Q8IWF9 413 aa12.62□□□□□ -0.39
CALD1-203ENST00000393118 PTCH1Q13635 1447 aa12.61□□□□□ -0.39
CALD1-203ENST00000393118 CLTCQ00610 1675 aaKnown RBP12.61□□□□□ -0.39
CALD1-203ENST00000393118 IGSF1Q8N6C5 1336 aa12.61□□□□□ -0.39
CALD1-203ENST00000393118 CSPP1Q1MSJ5 1256 aa12.61□□□□□ -0.39
CALD1-203ENST00000393118 PLCD3Q8N3E9 789 aa12.61□□□□□ -0.39
CALD1-203ENST00000393118 DDX17Q92841 729 aaKnown RBP12.61□□□□□ -0.39
CALD1-203ENST00000393118 MYO3AQ8NEV4 1616 aa12.61□□□□□ -0.39
CALD1-203ENST00000393118 ECHDC1Q9NTX5 307 aa12.61□□□□□ -0.39
CALD1-203ENST00000393118 ARHGEF28Q8N1W1 1705 aaKnown RBP12.61□□□□□ -0.39
CALD1-203ENST00000393118 WDR33Q9C0J8 1336 aaKnown RBP12.61□□□□□ -0.39
CALD1-203ENST00000393118 PDIA4P13667 645 aaKnown RBP12.61□□□□□ -0.39
CALD1-203ENST00000393118 LARP1Q6PKG0 1096 aaKnown RBP12.61□□□□□ -0.39
CALD1-203ENST00000393118 PDRG1Q9NUG6 133 aa12.61□□□□□ -0.39
CALD1-203ENST00000393118 HYPKQ9NX55 129 aa12.61□□□□□ -0.39
CALD1-203ENST00000393118 NLRP1Q9C000 1473 aa12.6□□□□□ -0.39
CALD1-203ENST00000393118 CBX1P83916 185 aa12.6□□□□□ -0.39
CALD1-203ENST00000393118 FERMT3Q86UX7 667 aa12.6□□□□□ -0.39
CALD1-203ENST00000393118 NFATC2IPQ8NCF5 419 aa12.6□□□□□ -0.39
CALD1-203ENST00000393118 CHAMP1Q96JM3 812 aa12.6□□□□□ -0.39
CALD1-203ENST00000393118 PREX1Q8TCU6 1659 aa12.6□□□□□ -0.39
CALD1-203ENST00000393118 PKP1Q13835 747 aa12.6□□□□□ -0.39
CALD1-203ENST00000393118 COPS6Q7L5N1 327 aa12.6□□□□□ -0.39
CALD1-203ENST00000393118 MTERF4Q7Z6M4 381 aaKnown RBP12.6□□□□□ -0.39
CALD1-203ENST00000393118 UBE3BQ7Z3V4 1068 aa12.59□□□□□ -0.39
CALD1-203ENST00000393118 XAGE3Q8WTP9 111 aa12.59□□□□□ -0.39
CALD1-203ENST00000393118 TCEANC2Q96MN5 208 aa12.59□□□□□ -0.39
CALD1-203ENST00000393118 RNMTO43148 476 aaKnown RBP12.59□□□□□ -0.39
CALD1-203ENST00000393118 ISY1Q9ULR0 285 aaKnown RBP12.59□□□□□ -0.39
CALD1-203ENST00000393118 TMEM131LA2VDJ0 1609 aa12.59□□□□□ -0.39
CALD1-203ENST00000393118 CPA1P15085 419 aa12.59□□□□□ -0.39
CALD1-203ENST00000393118 EIF4A1P60842 406 aaKnown RBP12.59□□□□□ -0.39
CALD1-203ENST00000393118 KLHL40Q2TBA0 621 aa12.59□□□□□ -0.39
CALD1-203ENST00000393118 PSMA5P28066 241 aa12.59□□□□□ -0.39
CALD1-203ENST00000393118 KSR2Q6VAB6 950 aa12.59□□□□□ -0.39
CALD1-203ENST00000393118 WASHC4Q2M389 1173 aa12.58□□□□□ -0.4
CALD1-203ENST00000393118 ZSCAN30Q86W11 494 aa12.58□□□□□ -0.4
CALD1-203ENST00000393118 A0A087WZG4 1122 aa12.58□□□□□ -0.4
CALD1-203ENST00000393118 BLOC1S2Q6QNY1 142 aa12.58□□□□□ -0.4
CALD1-203ENST00000393118 KLHDC4Q8TBB5 520 aa12.58□□□□□ -0.4
CALD1-203ENST00000393118 COL3A1P02461 1466 aaPredicted RBP12.58□□□□□ -0.4
CALD1-203ENST00000393118 GRM8O00222 908 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms