RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 FMNL2Q96PY5 1086 aa31.34■■■□□ 2.61
SHOX2-201ENST00000389589 PROSER3Q2NL68 480 aa31.34■■■□□ 2.61
SHOX2-201ENST00000389589 ZNF496Q96IT1 587 aaPredicted RBP31.34■■■□□ 2.61
SHOX2-201ENST00000389589 LAMB4A4D0S4 1761 aa31.33■■■□□ 2.61
SHOX2-201ENST00000389589 DDX58O95786 925 aaKnown RBP31.33■■■□□ 2.61
SHOX2-201ENST00000389589 SNRPA1P09661 255 aaKnown RBP31.33■■■□□ 2.61
SHOX2-201ENST00000389589 ANP32EQ9BTT0 268 aa31.33■■■□□ 2.61
SHOX2-201ENST00000389589 LRRFIP2Q9Y608 721 aaKnown RBP31.33■■■□□ 2.61
SHOX2-201ENST00000389589 ALDH1L1O75891 902 aa31.31■■■□□ 2.6
SHOX2-201ENST00000389589 PDIA6Q15084 440 aa31.31■■■□□ 2.6
SHOX2-201ENST00000389589 PLEKHM2Q8IWE5 1019 aa31.31■■■□□ 2.6
SHOX2-201ENST00000389589 BTG4Q9NY30 223 aa31.3■■■□□ 2.6
SHOX2-201ENST00000389589 MAP3K2Q9Y2U5 619 aa31.3■■■□□ 2.6
SHOX2-201ENST00000389589 UBR2Q8IWV8 1755 aa31.3■■■□□ 2.6
SHOX2-201ENST00000389589 COL16A1Q07092 1604 aaPredicted RBP31.28■■■□□ 2.6
SHOX2-201ENST00000389589 PAPPAQ13219 1627 aa31.28■■■□□ 2.6
SHOX2-201ENST00000389589 PHLPP1O60346 1717 aa31.28■■■□□ 2.6
SHOX2-201ENST00000389589 TBC1D32Q96NH3 1257 aa31.28■■■□□ 2.6
SHOX2-201ENST00000389589 HDAC5Q9UQL6 1122 aa31.27■■■□□ 2.6
SHOX2-201ENST00000389589 GLI3P10071 1580 aa31.27■■■□□ 2.6
SHOX2-201ENST00000389589 PNMA6EA0A0J9YXQ4 647 aa31.26■■■□□ 2.59
SHOX2-201ENST00000389589 SSH3Q8TE77 659 aa31.25■■■□□ 2.59
SHOX2-201ENST00000389589 PLCH1Q4KWH8 1693 aa31.24■■■□□ 2.59
SHOX2-201ENST00000389589 DDX54Q8TDD1 881 aaKnown RBP31.24■■■□□ 2.59
SHOX2-201ENST00000389589 DAXXQ9UER7 740 aaPredicted RBP31.24■■■□□ 2.59
SHOX2-201ENST00000389589 IBTKQ9P2D0 1353 aaPredicted RBP31.23■■■□□ 2.59
SHOX2-201ENST00000389589 LINS1Q8NG48 757 aa31.23■■■□□ 2.59
SHOX2-201ENST00000389589 APBB1O00213 710 aa31.22■■■□□ 2.59
SHOX2-201ENST00000389589 SMARCA5O60264 1052 aaPredicted RBP31.22■■■□□ 2.59
SHOX2-201ENST00000389589 NBPF7P0C2Y1 421 aaPredicted RBP31.22■■■□□ 2.59
SHOX2-201ENST00000389589 TTC22Q5TAA0 569 aa31.22■■■□□ 2.59
SHOX2-201ENST00000389589 C16orf71Q8IYS4 520 aaPredicted RBP31.22■■■□□ 2.59
SHOX2-201ENST00000389589 USP16Q9Y5T5 823 aa31.22■■■□□ 2.59
SHOX2-201ENST00000389589 LRRCC1Q9C099 1032 aa31.21■■■□□ 2.59
SHOX2-201ENST00000389589 EXOC6BQ9Y2D4 811 aa31.21■■■□□ 2.59
SHOX2-201ENST00000389589 AIMP1Q12904 312 aaKnown RBP31.2■■■□□ 2.59
SHOX2-201ENST00000389589 POLA2Q14181 598 aa31.2■■■□□ 2.59
SHOX2-201ENST00000389589 ERBB4Q15303 1308 aa31.2■■■□□ 2.59
SHOX2-201ENST00000389589 TOGARAM1Q9Y4F4 1720 aa31.2■■■□□ 2.59
SHOX2-201ENST00000389589 EIF5BO60841 1220 aaKnown RBP31.2■■■□□ 2.58
SHOX2-201ENST00000389589 MYL6BP14649 208 aa31.2■■■□□ 2.58
SHOX2-201ENST00000389589 MFAP1P55081 439 aaKnown RBP31.2■■■□□ 2.58
SHOX2-201ENST00000389589 C9orf78Q9NZ63 289 aaPredicted RBP31.2■■■□□ 2.58
SHOX2-201ENST00000389589 USP35Q9P2H5 1018 aa31.2■■■□□ 2.58
SHOX2-201ENST00000389589 PPP1R42Q7Z4L9 355 aa31.19■■■□□ 2.58
SHOX2-201ENST00000389589 RIC3Q7Z5B4 369 aa31.19■■■□□ 2.58
SHOX2-201ENST00000389589 WNK3Q9BYP7 1800 aa31.19■■■□□ 2.58
SHOX2-201ENST00000389589 DISP2A7MBM2 1401 aa31.18■■■□□ 2.58
SHOX2-201ENST00000389589 KCPQ6ZWJ8 1503 aa31.18■■■□□ 2.58
SHOX2-201ENST00000389589 XAGE3Q8WTP9 111 aa31.18■■■□□ 2.58
SHOX2-201ENST00000389589 GSPT1P15170 499 aaKnown RBP31.17■■■□□ 2.58
SHOX2-201ENST00000389589 C22orf23Q9BZE7 217 aa31.17■■■□□ 2.58
SHOX2-201ENST00000389589 OSBPL3Q9H4L5 887 aa31.17■■■□□ 2.58
SHOX2-201ENST00000389589 CDC45O75419 566 aa31.17■■■□□ 2.58
SHOX2-201ENST00000389589 NEXNQ0ZGT2 675 aa31.17■■■□□ 2.58
SHOX2-201ENST00000389589 COPS6Q7L5N1 327 aa31.17■■■□□ 2.58
SHOX2-201ENST00000389589 LRP10Q7Z4F1 713 aa31.17■■■□□ 2.58
SHOX2-201ENST00000389589 RAB11FIP3O75154 756 aa31.16■■■□□ 2.58
SHOX2-201ENST00000389589 OTUD7AQ8TE49 926 aaPredicted RBP31.16■■■□□ 2.58
SHOX2-201ENST00000389589 TNS2Q63HR2 1409 aa31.16■■■□□ 2.58
SHOX2-201ENST00000389589 UTYO14607 1347 aa31.15■■■□□ 2.58
SHOX2-201ENST00000389589 MTX1Q13505 466 aa31.15■■■□□ 2.58
SHOX2-201ENST00000389589 SRGAP3O43295 1099 aa31.14■■■□□ 2.58
SHOX2-201ENST00000389589 CWF19L2Q2TBE0 894 aaKnown RBP31.14■■■□□ 2.58
SHOX2-201ENST00000389589 TBC1D9Q6ZT07 1266 aa31.13■■■□□ 2.57
SHOX2-201ENST00000389589 METTL22Q9BUU2 404 aaPredicted RBP31.13■■■□□ 2.57
SHOX2-201ENST00000389589 ARFGEF2Q9Y6D5 1785 aa31.13■■■□□ 2.57
SHOX2-201ENST00000389589 GRM8O00222 908 aa31.13■■■□□ 2.57
SHOX2-201ENST00000389589 TOM1O60784 492 aa31.13■■■□□ 2.57
SHOX2-201ENST00000389589 ANKRD13DQ6ZTN6 518 aa31.13■■■□□ 2.57
SHOX2-201ENST00000389589 BCL11AQ9H165 835 aa31.13■■■□□ 2.57
SHOX2-201ENST00000389589 ITGB4P16144 1822 aa31.13■■■□□ 2.57
SHOX2-201ENST00000389589 BECN1Q14457 450 aa31.12■■■□□ 2.57
SHOX2-201ENST00000389589 TMOD3Q9NYL9 352 aa31.12■■■□□ 2.57
SHOX2-201ENST00000389589 HSP90AB4PQ58FF6 505 aa31.12■■■□□ 2.57
SHOX2-201ENST00000389589 AFDNP55196 1824 aaKnown RBP31.11■■■□□ 2.57
SHOX2-201ENST00000389589 PDE1AP54750 535 aa31.1■■■□□ 2.57
SHOX2-201ENST00000389589 NRAPQ86VF7 1730 aa31.1■■■□□ 2.57
SHOX2-201ENST00000389589 LRP6O75581 1613 aa31.1■■■□□ 2.57
SHOX2-201ENST00000389589 SALL3Q9BXA9 1300 aa31.1■■■□□ 2.57
SHOX2-201ENST00000389589 SURF6O75683 361 aaKnown RBP31.1■■■□□ 2.57
SHOX2-201ENST00000389589 IGKV5-2P06315 115 aa31.09■■■□□ 2.57
SHOX2-201ENST00000389589 TUBGCP6Q96RT7 1819 aa31.09■■■□□ 2.57
SHOX2-201ENST00000389589 NEURL1BA8MQ27 555 aa31.08■■■□□ 2.57
SHOX2-201ENST00000389589 RBM25P49756 843 aaKnown RBP31.07■■■□□ 2.56
SHOX2-201ENST00000389589 PLBD2Q8NHP8 589 aa31.06■■■□□ 2.56
SHOX2-201ENST00000389589 MYD88Q99836 296 aa31.06■■■□□ 2.56
SHOX2-201ENST00000389589 CDCA7Q9BWT1 371 aaPredicted RBP31.06■■■□□ 2.56
SHOX2-201ENST00000389589 SDSP20132 328 aa31.05■■■□□ 2.56
SHOX2-201ENST00000389589 MX1P20591 662 aa31.05■■■□□ 2.56
SHOX2-201ENST00000389589 KIF1BPQ96EK5 621 aa31.05■■■□□ 2.56
SHOX2-201ENST00000389589 EXOC5O00471 708 aa31.05■■■□□ 2.56
SHOX2-201ENST00000389589 SLC4A3P48751 1232 aa31.05■■■□□ 2.56
SHOX2-201ENST00000389589 GCKRQ14397 625 aa31.05■■■□□ 2.56
SHOX2-201ENST00000389589 CASC1Q6TDU7 716 aa31.05■■■□□ 2.56
SHOX2-201ENST00000389589 STAP2Q9UGK3 403 aa31.05■■■□□ 2.56
SHOX2-201ENST00000389589 AOX1Q06278 1338 aa31.05■■■□□ 2.56
SHOX2-201ENST00000389589 NWD2Q9ULI1 1742 aa31.05■■■□□ 2.56
SHOX2-201ENST00000389589 PTCD1O75127 700 aaKnown RBP31.04■■■□□ 2.56
SHOX2-201ENST00000389589 PIP4K2AP48426 406 aaPredicted RBP31.04■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms