RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 PRR7Q8TB68 274 aa2.12□□□□□ -2.07
RNU6-540P-201ENST00000384622 FBXL18Q96ME1 805 aa2.12□□□□□ -2.07
RNU6-540P-201ENST00000384622 CARD14Q9BXL6 1004 aa2.12□□□□□ -2.07
RNU6-540P-201ENST00000384622 MAP10Q9P2G4 905 aa2.12□□□□□ -2.07
RNU6-540P-201ENST00000384622 STOML1Q9UBI4 398 aa2.12□□□□□ -2.07
RNU6-540P-201ENST00000384622 RAXQ9Y2V3 346 aa2.12□□□□□ -2.07
RNU6-540P-201ENST00000384622 A0A1B0GTH6 734 aa2.11□□□□□ -2.07
RNU6-540P-201ENST00000384622 BIN1O00499 593 aa2.11□□□□□ -2.07
RNU6-540P-201ENST00000384622 AKAP8O43823 692 aaKnown RBP2.11□□□□□ -2.07
RNU6-540P-201ENST00000384622 ALBP02768 609 aa2.11□□□□□ -2.07
RNU6-540P-201ENST00000384622 NFKB2Q00653 900 aa2.11□□□□□ -2.07
RNU6-540P-201ENST00000384622 NLRP3Q96P20 1036 aa2.11□□□□□ -2.07
RNU6-540P-201ENST00000384622 GRIP2Q9C0E4 1043 aa2.11□□□□□ -2.07
RNU6-540P-201ENST00000384622 LILRA1O75019 489 aa2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 CD33P20138 364 aa2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 MESP2Q0VG99 397 aa2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 NFIAQ12857 509 aa2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 INTS6LQ5JSJ4 861 aaKnown RBP2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 FAM182BQ5T319 152 aa2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 FIGNL1Q6PIW4 674 aa2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 LYPD8Q6UX82 237 aa2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 AMIGO3Q86WK7 504 aa2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 DZIP1LQ8IYY4 767 aaKnown RBP2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 FMR1NBQ8N0W7 255 aaPredicted RBP2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 MENTQ9BUN1 341 aa2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 CDV3Q9UKY7 258 aaKnown RBP2.1□□□□□ -2.07
RNU6-540P-201ENST00000384622 LILRB5O75023 590 aa2.09□□□□□ -2.07
RNU6-540P-201ENST00000384622 ADRB1P08588 477 aa2.09□□□□□ -2.07
RNU6-540P-201ENST00000384622 FDX1P10109 184 aa2.09□□□□□ -2.07
RNU6-540P-201ENST00000384622 COL19A1Q14993 1142 aa2.09□□□□□ -2.07
RNU6-540P-201ENST00000384622 SH3BP5LQ7L8J4 393 aa2.09□□□□□ -2.07
RNU6-540P-201ENST00000384622 ARMC2Q8NEN0 867 aa2.09□□□□□ -2.07
RNU6-540P-201ENST00000384622 TMEM40Q8WWA1 233 aa2.09□□□□□ -2.07
RNU6-540P-201ENST00000384622 PCDHGC3Q9UN70 934 aa2.09□□□□□ -2.07
RNU6-540P-201ENST00000384622 STARD13Q9Y3M8 1113 aa2.09□□□□□ -2.07
RNU6-540P-201ENST00000384622 PCDHGC4Q9Y5F7 938 aa2.09□□□□□ -2.07
RNU6-540P-201ENST00000384622 A0A1W2PRU2 124 aa2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 MEGF11A6BM72 1044 aa2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 TSPAN15O95858 294 aa2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 F12P00748 615 aaPredicted RBP2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 PHKA2P46019 1235 aa2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 KRTAP10-7P60409 375 aaPredicted RBP2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 SLC10A4Q96EP9 437 aa2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 SLC4A9Q96Q91 983 aa2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 ZIC5Q96T25 663 aa2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 PHOX2BQ99453 314 aa2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 CCDC39Q9UFE4 941 aa2.08□□□□□ -2.08
RNU6-540P-201ENST00000384622 SKIP12755 728 aa2.07□□□□□ -2.08
RNU6-540P-201ENST00000384622 MLLT3P42568 568 aaPredicted RBP2.07□□□□□ -2.08
RNU6-540P-201ENST00000384622 KRTAP5-1Q6L8H4 278 aa2.07□□□□□ -2.08
RNU6-540P-201ENST00000384622 SYT9Q86SS6 491 aa2.07□□□□□ -2.08
RNU6-540P-201ENST00000384622 AGBL5Q8NDL9 886 aa2.07□□□□□ -2.08
RNU6-540P-201ENST00000384622 FAM168AQ92567 244 aa2.07□□□□□ -2.08
RNU6-540P-201ENST00000384622 ZCCHC2Q9C0B9 1178 aaKnown RBP2.07□□□□□ -2.08
RNU6-540P-201ENST00000384622 ADARB2-AS1A8MUL3 147 aa2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 MAPTP10636 758 aaKnown RBP2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 TGM1P22735 817 aa2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 MSX1P28360 303 aa2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 HOXA10P31260 410 aaPredicted RBP2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 RAB15P59190 212 aa2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 HIC1Q14526 733 aa2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 KRTAP5-4Q6L8H1 288 aa2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 ZSCAN10Q96SZ4 725 aaPredicted RBP2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 PPP1R16BQ96T49 567 aa2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 MDFIQ99750 246 aa2.06□□□□□ -2.08
RNU6-540P-201ENST00000384622 DCDC2BA2VCK2 349 aa2.05□□□□□ -2.08
RNU6-540P-201ENST00000384622 ATXN7O15265 892 aaPredicted RBP2.05□□□□□ -2.08
RNU6-540P-201ENST00000384622 KRTAP10-9P60411 292 aa2.05□□□□□ -2.08
RNU6-540P-201ENST00000384622 HNRNPA0Q13151 305 aaKnown RBP2.05□□□□□ -2.08
RNU6-540P-201ENST00000384622 PUM1Q14671 1186 aaKnown RBP eCLIP2.05□□□□□ -2.08
RNU6-540P-201ENST00000384622 IGF2-ASQ6U949 168 aa2.05□□□□□ -2.08
RNU6-540P-201ENST00000384622 C20orf204Q6ZNR8 217 aa2.05□□□□□ -2.08
RNU6-540P-201ENST00000384622 DMRTC2Q8IXT2 367 aaPredicted RBP2.05□□□□□ -2.08
RNU6-540P-201ENST00000384622 DBNDD2Q9BQY9 259 aa2.05□□□□□ -2.08
RNU6-540P-201ENST00000384622 AKTIPQ9H8T0 292 aa2.05□□□□□ -2.08
RNU6-540P-201ENST00000384622 LRRC10BA6NIK2 292 aa2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 SPDYE5A6NIY4 337 aa2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 ERVH48-1M5A8F1 160 aa2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 KHNYNO15037 678 aaKnown RBP2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 INSRRP14616 1297 aa2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 TNP2Q05952 138 aa2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 RNF43Q68DV7 783 aa2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 VSIG10LQ86VR7 867 aa2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 NUTM1Q86Y26 1132 aa2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 SRRDQ9UH36 339 aa2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 HCN2Q9UL51 889 aa2.04□□□□□ -2.08
RNU6-540P-201ENST00000384622 DHX15O43143 795 aaKnown RBP2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 SIN3BO75182 1162 aa2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 ALX3O95076 343 aa2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 HMGA2P52926 109 aa2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 MTMR2Q13614 643 aa2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 SKOR2Q2VWA4 1001 aaPredicted RBP2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 NFXL1Q6ZNB6 911 aa2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 FBXO11Q86XK2 927 aa2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 SHKBP1Q8TBC3 707 aa2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 CRISPLD1Q9H336 500 aa2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 CYLDQ9NQC7 956 aa2.03□□□□□ -2.08
RNU6-540P-201ENST00000384622 A0A0G2JLL6 359 aaPredicted RBP2.02□□□□□ -2.09
RNU6-540P-201ENST00000384622 PRNPP04156 253 aa2.02□□□□□ -2.09
RNU6-540P-201ENST00000384622 ATXN1P54253 815 aaKnown RBP2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms