RNA–Protein interactions for RNA: ENST00000373019.4

SF3A3-201, Transcript of splicing factor 3a subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A3, Length 3,673 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A3-201ENST00000373019 NPHP1O15259 732 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 ZRANB2O95218 330 aaKnown RBP eCLIP11.37□□□□□ -0.59
SF3A3-201ENST00000373019 SRLQ86TD4 932 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 PLA2G4DQ86XP0 818 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 BCCIPQ9P287 314 aaKnown RBP eCLIP11.37□□□□□ -0.59
SF3A3-201ENST00000373019 RTL1A6NKG5 1358 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 ZSCAN26Q16670 478 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 CCDC144BQ3MJ40 725 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 CCDC144CPQ8IYA2 1237 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 CNPY4Q8N129 248 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 LMOD3Q0VAK6 560 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 ERCC6LQ2NKX8 1250 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 LUZP1Q86V48 1076 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 ANKLE2Q86XL3 938 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 LRRN4CLQ8ND94 238 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 TOMM22Q9NS69 142 aa11.37□□□□□ -0.59
SF3A3-201ENST00000373019 LRRFIP2Q9Y608 721 aaKnown RBP11.37□□□□□ -0.59
SF3A3-201ENST00000373019 WDR33Q9C0J8 1336 aaKnown RBP11.36□□□□□ -0.59
SF3A3-201ENST00000373019 PIK3R4Q99570 1358 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 MORC1Q86VD1 984 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 CCDC191Q8NCU4 936 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 SETD1BQ9UPS6 1966 aaKnown RBP11.36□□□□□ -0.59
SF3A3-201ENST00000373019 ABCC3O15438 1527 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 FAM200AQ8TCP9 573 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 JRKLQ9Y4A0 524 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 CLTCQ00610 1675 aaKnown RBP11.36□□□□□ -0.59
SF3A3-201ENST00000373019 SLU7O95391 586 aaKnown RBP11.36□□□□□ -0.59
SF3A3-201ENST00000373019 MCM2P49736 904 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 ALDH1L2Q3SY69 923 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 NOL8Q76FK4 1167 aaKnown RBP11.36□□□□□ -0.59
SF3A3-201ENST00000373019 PACS2Q86VP3 889 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 PLEKHF1Q96S99 279 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 PALD1Q9ULE6 856 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 UNC13BO14795 1591 aa11.36□□□□□ -0.59
SF3A3-201ENST00000373019 POLR3GO15318 223 aaPredicted RBP11.35□□□□□ -0.59
SF3A3-201ENST00000373019 REXO1L1PQ8IX06 675 aa11.35□□□□□ -0.59
SF3A3-201ENST00000373019 CARD10Q9BWT7 1032 aa11.35□□□□□ -0.59
SF3A3-201ENST00000373019 ZCCHC17Q9NP64 241 aaKnown RBP11.35□□□□□ -0.59
SF3A3-201ENST00000373019 CFAP65Q6ZU64 1925 aaKnown RBP11.35□□□□□ -0.59
SF3A3-201ENST00000373019 NPATQ14207 1427 aa11.35□□□□□ -0.59
SF3A3-201ENST00000373019 IDI1Q13907 227 aa11.35□□□□□ -0.59
SF3A3-201ENST00000373019 DCTPP1Q9H773 170 aa11.35□□□□□ -0.59
SF3A3-201ENST00000373019 MRVI1Q9Y6F6 885 aa11.35□□□□□ -0.59
SF3A3-201ENST00000373019 ADAMTSL3P82987 1691 aa11.35□□□□□ -0.59
SF3A3-201ENST00000373019 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.34□□□□□ -0.59
SF3A3-201ENST00000373019 ERC2O15083 957 aa11.34□□□□□ -0.59
SF3A3-201ENST00000373019 ZNF75DP51815 510 aa11.34□□□□□ -0.59
SF3A3-201ENST00000373019 TXNDC2Q86VQ3 553 aa11.34□□□□□ -0.59
SF3A3-201ENST00000373019 RRP15Q9Y3B9 282 aaKnown RBP11.34□□□□□ -0.59
SF3A3-201ENST00000373019 CEP83Q9Y592 693 aa11.34□□□□□ -0.59
SF3A3-201ENST00000373019 PLEKHG2Q9H7P9 1386 aa11.34□□□□□ -0.59
SF3A3-201ENST00000373019 U2AF1L5P0DN76 240 aaPredicted RBP11.34□□□□□ -0.59
SF3A3-201ENST00000373019 TMPOP42166 694 aaKnown RBP11.34□□□□□ -0.59
SF3A3-201ENST00000373019 U2AF1Q01081 240 aaKnown RBP eCLIP11.34□□□□□ -0.59
SF3A3-201ENST00000373019 ARID5BQ14865 1188 aa11.34□□□□□ -0.59
SF3A3-201ENST00000373019 PTPN14Q15678 1187 aa11.34□□□□□ -0.59
SF3A3-201ENST00000373019 CCDC192P0DO97 292 aa11.33□□□□□ -0.59
SF3A3-201ENST00000373019 TEX35Q5T0J7 233 aa11.33□□□□□ -0.59
SF3A3-201ENST00000373019 BANK1Q8NDB2 785 aa11.33□□□□□ -0.59
SF3A3-201ENST00000373019 ATAD2Q6PL18 1390 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 CCDC172P0C7W6 258 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 LRRC8AQ8IWT6 810 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 DRC1Q96MC2 740 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 L2HGDHQ9H9P8 463 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 NSD3Q9BZ95 1437 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 MYOM2P54296 1465 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 SART3Q15020 963 aaKnown RBP11.33□□□□□ -0.6
SF3A3-201ENST00000373019 DRC7Q8IY82 874 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 GPATCH11Q8N954 259 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 FBXO18Q8NFZ0 1043 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 CCDC171Q6TFL3 1326 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 NCKAP5LQ9HCH0 1330 aa11.33□□□□□ -0.6
SF3A3-201ENST00000373019 IL16Q14005 1332 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 CCDC93Q567U6 631 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.32□□□□□ -0.6
SF3A3-201ENST00000373019 IQGAP3Q86VI3 1631 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 RGS12O14924 1447 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 FIBPO43427 364 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 RNF20Q5VTR2 975 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 CBX8Q9HC52 389 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 SPHKAPQ2M3C7 1700 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 PTCH1Q13635 1447 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 ZSCAN22P10073 491 aaPredicted RBP11.32□□□□□ -0.6
SF3A3-201ENST00000373019 ATP2B1P20020 1258 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 SAFB2Q14151 953 aaKnown RBP eCLIP11.32□□□□□ -0.6
SF3A3-201ENST00000373019 CASC1Q6TDU7 716 aa11.32□□□□□ -0.6
SF3A3-201ENST00000373019 TPM4P67936 248 aa11.31□□□□□ -0.6
SF3A3-201ENST00000373019 TRIM5Q9C035 493 aa11.31□□□□□ -0.6
SF3A3-201ENST00000373019 SASH3O75995 380 aa11.31□□□□□ -0.6
SF3A3-201ENST00000373019 GOLGA5Q8TBA6 731 aa11.31□□□□□ -0.6
SF3A3-201ENST00000373019 CLIP2Q9UDT6 1046 aa11.31□□□□□ -0.6
SF3A3-201ENST00000373019 ABCC4O15439 1325 aa11.31□□□□□ -0.6
SF3A3-201ENST00000373019 TYRO3Q06418 890 aa11.31□□□□□ -0.6
SF3A3-201ENST00000373019 IQUBQ8NA54 791 aa11.31□□□□□ -0.6
SF3A3-201ENST00000373019 STK26Q9P289 416 aa11.31□□□□□ -0.6
SF3A3-201ENST00000373019 ZC3H13Q5T200 1668 aaKnown RBP11.31□□□□□ -0.6
SF3A3-201ENST00000373019 A0A1B0GUL7 405 aa11.3□□□□□ -0.6
SF3A3-201ENST00000373019 NUTM2FA1L443 756 aa11.3□□□□□ -0.6
SF3A3-201ENST00000373019 HTATSF1O43719 755 aaKnown RBP11.3□□□□□ -0.6
SF3A3-201ENST00000373019 GSCP56915 257 aaPredicted RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms