RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 SPG7Q9UQ90 795 aa17.38■□□□□ 0.37
USF1-202ENST00000368020 EIF4A1P60842 406 aaKnown RBP17.37■□□□□ 0.37
USF1-202ENST00000368020 BARGINQ6ZT62 677 aa17.37■□□□□ 0.37
USF1-202ENST00000368020 PLEKHM2Q8IWE5 1019 aa17.37■□□□□ 0.37
USF1-202ENST00000368020 AFF2P51816 1311 aa17.37■□□□□ 0.37
USF1-202ENST00000368020 CASC1Q6TDU7 716 aa17.36■□□□□ 0.37
USF1-202ENST00000368020 PKD1L3Q7Z443 1732 aa17.36■□□□□ 0.37
USF1-202ENST00000368020 DISP2A7MBM2 1401 aa17.36■□□□□ 0.37
USF1-202ENST00000368020 TTC22Q5TAA0 569 aa17.35■□□□□ 0.37
USF1-202ENST00000368020 BTBD11A6QL63 1104 aa17.35■□□□□ 0.37
USF1-202ENST00000368020 F6X3S4 739 aa17.35■□□□□ 0.37
USF1-202ENST00000368020 RNMTO43148 476 aaKnown RBP17.35■□□□□ 0.37
USF1-202ENST00000368020 NFKBIBQ15653 356 aa17.35■□□□□ 0.37
USF1-202ENST00000368020 TBC1D2Q9BYX2 928 aa17.34■□□□□ 0.37
USF1-202ENST00000368020 SCN11AQ9UI33 1791 aa17.33■□□□□ 0.37
USF1-202ENST00000368020 TBC1D9Q6ZT07 1266 aa17.33■□□□□ 0.37
USF1-202ENST00000368020 HSCBQ8IWL3 235 aa17.33■□□□□ 0.37
USF1-202ENST00000368020 ZCRB1Q8TBF4 217 aaKnown RBP17.33■□□□□ 0.37
USF1-202ENST00000368020 SNX21Q969T3 373 aa17.33■□□□□ 0.37
USF1-202ENST00000368020 TRPC5Q9UL62 973 aaPredicted RBP17.33■□□□□ 0.37
USF1-202ENST00000368020 HDAC5Q9UQL6 1122 aa17.33■□□□□ 0.37
USF1-202ENST00000368020 ATRNO75882 1429 aa17.33■□□□□ 0.36
USF1-202ENST00000368020 CCDC9Q9Y3X0 531 aaKnown RBP17.33■□□□□ 0.36
USF1-202ENST00000368020 WNK3Q9BYP7 1800 aa17.32■□□□□ 0.36
USF1-202ENST00000368020 DEKP35659 375 aaKnown RBP17.32■□□□□ 0.36
USF1-202ENST00000368020 IFNL2Q8IZJ0 200 aa17.32■□□□□ 0.36
USF1-202ENST00000368020 OSBPL3Q9H4L5 887 aa17.32■□□□□ 0.36
USF1-202ENST00000368020 LGR6Q9HBX8 967 aa17.32■□□□□ 0.36
USF1-202ENST00000368020 PCDH11XQ9BZA7 1347 aa17.31■□□□□ 0.36
USF1-202ENST00000368020 PCDH11YQ9BZA8 1340 aa17.31■□□□□ 0.36
USF1-202ENST00000368020 UBTFL1P0CB47 393 aaPredicted RBP17.31■□□□□ 0.36
USF1-202ENST00000368020 ATP8B2P98198 1209 aa17.31■□□□□ 0.36
USF1-202ENST00000368020 GJD4Q96KN9 370 aaPredicted RBP17.31■□□□□ 0.36
USF1-202ENST00000368020 DBF4Q9UBU7 674 aaPredicted RBP17.31■□□□□ 0.36
USF1-202ENST00000368020 HSP90AB1P08238 724 aaKnown RBP17.3■□□□□ 0.36
USF1-202ENST00000368020 ZNF772Q68DY9 489 aaPredicted RBP17.3■□□□□ 0.36
USF1-202ENST00000368020 SRCIN1Q9C0H9 1055 aa17.3■□□□□ 0.36
USF1-202ENST00000368020 HEG1Q9ULI3 1381 aa17.3■□□□□ 0.36
USF1-202ENST00000368020 CYP27B1O15528 508 aa17.3■□□□□ 0.36
USF1-202ENST00000368020 PHKG2P15735 406 aa17.3■□□□□ 0.36
USF1-202ENST00000368020 EXOC5O00471 708 aa17.29■□□□□ 0.36
USF1-202ENST00000368020 ONECUT3O60422 494 aaPredicted RBP17.29■□□□□ 0.36
USF1-202ENST00000368020 GSPT1P15170 499 aaKnown RBP17.29■□□□□ 0.36
USF1-202ENST00000368020 NKX1-1Q15270 411 aaPredicted RBP17.29■□□□□ 0.36
USF1-202ENST00000368020 MPRIPQ6WCQ1 1025 aa17.29■□□□□ 0.36
USF1-202ENST00000368020 LRRCC1Q9C099 1032 aa17.29■□□□□ 0.36
USF1-202ENST00000368020 ANTXR1Q9H6X2 564 aa17.29■□□□□ 0.36
USF1-202ENST00000368020 NECTIN2Q92692 538 aa17.28■□□□□ 0.36
USF1-202ENST00000368020 QTRT2Q9H974 415 aaKnown RBP17.28■□□□□ 0.36
USF1-202ENST00000368020 IBTKQ9P2D0 1353 aaPredicted RBP17.28■□□□□ 0.36
USF1-202ENST00000368020 DNAAF4Q8WXU2 420 aa17.27■□□□□ 0.36
USF1-202ENST00000368020 DCAF5Q96JK2 942 aa17.27■□□□□ 0.36
USF1-202ENST00000368020 TUBGCP6Q96RT7 1819 aa17.27■□□□□ 0.36
USF1-202ENST00000368020 SHANK3Q9BYB0 1731 aa17.27■□□□□ 0.36
USF1-202ENST00000368020 AOX1Q06278 1338 aa17.27■□□□□ 0.36
USF1-202ENST00000368020 TNS2Q63HR2 1409 aa17.27■□□□□ 0.35
USF1-202ENST00000368020 RAB11FIP3O75154 756 aa17.27■□□□□ 0.35
USF1-202ENST00000368020 EIF2S2P20042 333 aaKnown RBP17.27■□□□□ 0.35
USF1-202ENST00000368020 USP44Q9H0E7 712 aa17.27■□□□□ 0.35
USF1-202ENST00000368020 CHPF2Q9P2E5 772 aa17.27■□□□□ 0.35
USF1-202ENST00000368020 REC8O95072 547 aa17.26■□□□□ 0.35
USF1-202ENST00000368020 DDB1Q16531 1140 aa17.26■□□□□ 0.35
USF1-202ENST00000368020 HYPKQ9NX55 129 aa17.26■□□□□ 0.35
USF1-202ENST00000368020 GLI3P10071 1580 aa17.26■□□□□ 0.35
USF1-202ENST00000368020 GIGYF1O75420 1035 aaPredicted RBP17.25■□□□□ 0.35
USF1-202ENST00000368020 ALDH1L1O75891 902 aa17.25■□□□□ 0.35
USF1-202ENST00000368020 FAM98CQ17RN3 349 aaKnown RBP17.25■□□□□ 0.35
USF1-202ENST00000368020 HSP90AB4PQ58FF6 505 aa17.25■□□□□ 0.35
USF1-202ENST00000368020 SSH3Q8TE77 659 aa17.25■□□□□ 0.35
USF1-202ENST00000368020 PHAXQ9H814 394 aaKnown RBP17.25■□□□□ 0.35
USF1-202ENST00000368020 LRRFIP2Q9Y608 721 aaKnown RBP17.25■□□□□ 0.35
USF1-202ENST00000368020 MRC1P22897 1456 aa17.25■□□□□ 0.35
USF1-202ENST00000368020 SLKQ9H2G2 1235 aaPredicted RBP17.24■□□□□ 0.35
USF1-202ENST00000368020 CHMP5Q9NZZ3 219 aa17.24■□□□□ 0.35
USF1-202ENST00000368020 THSD7AQ9UPZ6 1657 aa17.24■□□□□ 0.35
USF1-202ENST00000368020 DDX58O95786 925 aaKnown RBP17.24■□□□□ 0.35
USF1-202ENST00000368020 PDE1AP54750 535 aa17.24■□□□□ 0.35
USF1-202ENST00000368020 SDSP20132 328 aa17.23■□□□□ 0.35
USF1-202ENST00000368020 BEND3Q5T5X7 828 aa17.23■□□□□ 0.35
USF1-202ENST00000368020 C16orf71Q8IYS4 520 aaPredicted RBP17.23■□□□□ 0.35
USF1-202ENST00000368020 DDX54Q8TDD1 881 aaKnown RBP17.23■□□□□ 0.35
USF1-202ENST00000368020 KDM6AO15550 1401 aaPredicted RBP17.23■□□□□ 0.35
USF1-202ENST00000368020 PI4KAP2A4QPH2 592 aa17.22■□□□□ 0.35
USF1-202ENST00000368020 RABEP1Q15276 862 aa17.22■□□□□ 0.35
USF1-202ENST00000368020 PI4KAP1Q8N8J0 262 aa17.22■□□□□ 0.35
USF1-202ENST00000368020 SLC52A2Q9HAB3 445 aa17.22■□□□□ 0.35
USF1-202ENST00000368020 CIZ1Q9ULV3 898 aaPredicted RBP17.22■□□□□ 0.35
USF1-202ENST00000368020 ERVV-2B6SEH9 535 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 SMARCA5O60264 1052 aaPredicted RBP17.21■□□□□ 0.35
USF1-202ENST00000368020 MX1P20591 662 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 POLA2Q14181 598 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 KSR2Q6VAB6 950 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 IL27Q8NEV9 243 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 STAP2Q9UGK3 403 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 EXOC6BQ9Y2D4 811 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 SALL3Q9BXA9 1300 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 ADCY9O60503 1353 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 PNMA6EA0A0J9YXQ4 647 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 APBB1O00213 710 aa17.21■□□□□ 0.35
USF1-202ENST00000368020 RBM6P78332 1123 aaKnown RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms