RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CCDC136Q96JN2 1154 aa23.68■■□□□ 1.38
CLN3-206ENST00000360019 ATG3Q9NT62 314 aa23.68■■□□□ 1.38
CLN3-206ENST00000360019 DBF4Q9UBU7 674 aaPredicted RBP23.67■■□□□ 1.38
CLN3-206ENST00000360019 ANXA1P04083 346 aa23.66■■□□□ 1.38
CLN3-206ENST00000360019 PHAXQ9H814 394 aaKnown RBP23.66■■□□□ 1.38
CLN3-206ENST00000360019 USP16Q9Y5T5 823 aa23.66■■□□□ 1.38
CLN3-206ENST00000360019 PTCD1O75127 700 aaKnown RBP23.66■■□□□ 1.38
CLN3-206ENST00000360019 PROSER3Q2NL68 480 aa23.66■■□□□ 1.38
CLN3-206ENST00000360019 ACSBG1Q96GR2 724 aa23.66■■□□□ 1.38
CLN3-206ENST00000360019 DDX19BQ9UMR2 479 aa23.65■■□□□ 1.38
CLN3-206ENST00000360019 LAMB4A4D0S4 1761 aa23.65■■□□□ 1.38
CLN3-206ENST00000360019 PDIA6Q15084 440 aa23.64■■□□□ 1.38
CLN3-206ENST00000360019 FKBP5Q13451 457 aaPredicted RBP23.63■■□□□ 1.37
CLN3-206ENST00000360019 F6X3S4 739 aa23.62■■□□□ 1.37
CLN3-206ENST00000360019 DDX21Q9NR30 783 aaKnown RBP eCLIP23.62■■□□□ 1.37
CLN3-206ENST00000360019 INTS3Q68E01 1043 aaKnown RBP23.61■■□□□ 1.37
CLN3-206ENST00000360019 SEPT12Q8IYM1 358 aa23.61■■□□□ 1.37
CLN3-206ENST00000360019 AAMPQ13685 434 aa23.61■■□□□ 1.37
CLN3-206ENST00000360019 EP400Q96L91 3159 aa23.6■■□□□ 1.37
CLN3-206ENST00000360019 KCNQ2O43526 872 aa23.59■■□□□ 1.37
CLN3-206ENST00000360019 HYPKQ9NX55 129 aa23.59■■□□□ 1.37
CLN3-206ENST00000360019 ZNF772Q68DY9 489 aaPredicted RBP23.59■■□□□ 1.37
CLN3-206ENST00000360019 LRP10Q7Z4F1 713 aa23.59■■□□□ 1.37
CLN3-206ENST00000360019 VSIG10Q8N0Z9 540 aa23.59■■□□□ 1.37
CLN3-206ENST00000360019 ZBTB7BO15156 539 aaPredicted RBP23.58■■□□□ 1.37
CLN3-206ENST00000360019 ZBTB40Q9NUA8 1239 aa23.58■■□□□ 1.37
CLN3-206ENST00000360019 FAM182BQ5T319 152 aa23.57■■□□□ 1.36
CLN3-206ENST00000360019 SLC4A9Q96Q91 983 aa23.57■■□□□ 1.36
CLN3-206ENST00000360019 RBM42Q9BTD8 480 aaKnown RBP23.57■■□□□ 1.36
CLN3-206ENST00000360019 MYL6BP14649 208 aa23.56■■□□□ 1.36
CLN3-206ENST00000360019 PIP4K2AP48426 406 aaPredicted RBP23.56■■□□□ 1.36
CLN3-206ENST00000360019 SLC4A10Q6U841 1118 aa23.56■■□□□ 1.36
CLN3-206ENST00000360019 PCDHB15Q9Y5E8 787 aa23.56■■□□□ 1.36
CLN3-206ENST00000360019 PXDNLA1KZ92 1463 aa23.55■■□□□ 1.36
CLN3-206ENST00000360019 DNAJC10Q8IXB1 793 aa23.55■■□□□ 1.36
CLN3-206ENST00000360019 ERBB4Q15303 1308 aa23.55■■□□□ 1.36
CLN3-206ENST00000360019 ADCY9O60503 1353 aa23.55■■□□□ 1.36
CLN3-206ENST00000360019 PI4KAP2A4QPH2 592 aa23.54■■□□□ 1.36
CLN3-206ENST00000360019 PI4KAP1Q8N8J0 262 aa23.54■■□□□ 1.36
CLN3-206ENST00000360019 NBPF26B4DH59 902 aa23.54■■□□□ 1.36
CLN3-206ENST00000360019 CCT4P50991 539 aaKnown RBP23.54■■□□□ 1.36
CLN3-206ENST00000360019 NBPF14Q5TI25 921 aa23.54■■□□□ 1.36
CLN3-206ENST00000360019 NBPF10Q6P3W6 841 aaKnown RBP23.54■■□□□ 1.36
CLN3-206ENST00000360019 NBPF15Q8N660 670 aa23.54■■□□□ 1.36
CLN3-206ENST00000360019 N4BP2Q86UW6 1770 aaPredicted RBP23.53■■□□□ 1.36
CLN3-206ENST00000360019 A1BGP04217 495 aa23.53■■□□□ 1.36
CLN3-206ENST00000360019 RBM6P78332 1123 aaKnown RBP23.52■■□□□ 1.36
CLN3-206ENST00000360019 PTF1AQ7RTS3 328 aa23.52■■□□□ 1.36
CLN3-206ENST00000360019 TEX13AQ9BXU3 409 aaPredicted RBP23.52■■□□□ 1.36
CLN3-206ENST00000360019 KDM2BQ8NHM5 1336 aa23.52■■□□□ 1.36
CLN3-206ENST00000360019 NHSQ6T4R5 1651 aa23.52■■□□□ 1.36
CLN3-206ENST00000360019 AIMP1Q12904 312 aaKnown RBP23.52■■□□□ 1.36
CLN3-206ENST00000360019 XAGE3Q8WTP9 111 aa23.52■■□□□ 1.36
CLN3-206ENST00000360019 DNAAF4Q8WXU2 420 aa23.52■■□□□ 1.36
CLN3-206ENST00000360019 TJP1Q07157 1748 aa23.51■■□□□ 1.35
CLN3-206ENST00000360019 PALLDQ8WX93 1383 aa23.51■■□□□ 1.35
CLN3-206ENST00000360019 KSR2Q6VAB6 950 aa23.51■■□□□ 1.35
CLN3-206ENST00000360019 COPS6Q7L5N1 327 aa23.51■■□□□ 1.35
CLN3-206ENST00000360019 CHMP4BQ9H444 224 aaKnown RBP23.51■■□□□ 1.35
CLN3-206ENST00000360019 BRWD3Q6RI45 1802 aa23.5■■□□□ 1.35
CLN3-206ENST00000360019 MAP3K2Q9Y2U5 619 aa23.49■■□□□ 1.35
CLN3-206ENST00000360019 IGHDP01880 384 aa23.49■■□□□ 1.35
CLN3-206ENST00000360019 STARD3NLO95772 234 aa23.48■■□□□ 1.35
CLN3-206ENST00000360019 DDX58O95786 925 aaKnown RBP23.48■■□□□ 1.35
CLN3-206ENST00000360019 SMARCC1Q92922 1105 aaPredicted RBP23.48■■□□□ 1.35
CLN3-206ENST00000360019 MEIS3Q99687 375 aa23.48■■□□□ 1.35
CLN3-206ENST00000360019 C1orf115Q9H7X2 142 aa23.48■■□□□ 1.35
CLN3-206ENST00000360019 RGS17Q9UGC6 210 aaPredicted RBP23.48■■□□□ 1.35
CLN3-206ENST00000360019 ATP10DQ9P241 1426 aa23.48■■□□□ 1.35
CLN3-206ENST00000360019 SBF2Q86WG5 1849 aa23.48■■□□□ 1.35
CLN3-206ENST00000360019 LOC102724428A0A0B4J2F2 783 aa23.47■■□□□ 1.35
CLN3-206ENST00000360019 CYP19A1P11511 503 aaPredicted RBP23.47■■□□□ 1.35
CLN3-206ENST00000360019 SIK1P57059 783 aa23.47■■□□□ 1.35
CLN3-206ENST00000360019 BEND3Q5T5X7 828 aa23.47■■□□□ 1.35
CLN3-206ENST00000360019 BTAF1O14981 1849 aa23.47■■□□□ 1.35
CLN3-206ENST00000360019 CENPQQ7L2Z9 268 aaPredicted RBP23.47■■□□□ 1.35
CLN3-206ENST00000360019 KRT27Q7Z3Y8 459 aa23.47■■□□□ 1.35
CLN3-206ENST00000360019 CICQ96RK0 1608 aaPredicted RBP23.46■■□□□ 1.35
CLN3-206ENST00000360019 SRCIN1Q9C0H9 1055 aa23.45■■□□□ 1.34
CLN3-206ENST00000360019 ATP6V1AP38606 617 aa23.45■■□□□ 1.34
CLN3-206ENST00000360019 RIC3Q7Z5B4 369 aa23.45■■□□□ 1.34
CLN3-206ENST00000360019 ANKRD13DQ6ZTN6 518 aa23.44■■□□□ 1.34
CLN3-206ENST00000360019 ITPK1Q13572 414 aa23.43■■□□□ 1.34
CLN3-206ENST00000360019 TTLL7Q6ZT98 887 aa23.43■■□□□ 1.34
CLN3-206ENST00000360019 RXRBP28702 533 aa23.43■■□□□ 1.34
CLN3-206ENST00000360019 ZBTB1Q9Y2K1 713 aa23.43■■□□□ 1.34
CLN3-206ENST00000360019 HDAC1Q13547 482 aaPredicted RBP23.42■■□□□ 1.34
CLN3-206ENST00000360019 USP44Q9H0E7 712 aa23.42■■□□□ 1.34
CLN3-206ENST00000360019 ZNF831Q5JPB2 1677 aa23.41■■□□□ 1.34
CLN3-206ENST00000360019 PLBD2Q8NHP8 589 aa23.41■■□□□ 1.34
CLN3-206ENST00000360019 RWDD1Q9H446 243 aaPredicted RBP23.41■■□□□ 1.34
CLN3-206ENST00000360019 ARFGEF2Q9Y6D5 1785 aa23.41■■□□□ 1.34
CLN3-206ENST00000360019 FAM196AQ6ZSG2 479 aa23.4■■□□□ 1.34
CLN3-206ENST00000360019 METTL22Q9BUU2 404 aaPredicted RBP23.4■■□□□ 1.34
CLN3-206ENST00000360019 CWF19L2Q2TBE0 894 aaKnown RBP23.4■■□□□ 1.34
CLN3-206ENST00000360019 POTEAQ6S8J7 498 aa23.4■■□□□ 1.34
CLN3-206ENST00000360019 SIRT2Q8IXJ6 389 aa23.4■■□□□ 1.34
CLN3-206ENST00000360019 LINS1Q8NG48 757 aa23.4■■□□□ 1.34
CLN3-206ENST00000360019 ALDH1L1O75891 902 aa23.39■■□□□ 1.33
CLN3-206ENST00000360019 IGKV5-2P06315 115 aa23.39■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms