RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 COL15A1P39059 1388 aa19.48■□□□□ 0.71
PRPF40A-201ENST00000354363 NRXN2Q9P2S2 1712 aa19.47■□□□□ 0.71
PRPF40A-201ENST00000354363 ARHGAP27Q6ZUM4 889 aa19.47■□□□□ 0.71
PRPF40A-201ENST00000354363 GAS2L2Q8NHY3 880 aa19.47■□□□□ 0.71
PRPF40A-201ENST00000354363 IL17REQ8NFR9 667 aa19.46■□□□□ 0.71
PRPF40A-201ENST00000354363 PIM2Q9P1W9 311 aa19.46■□□□□ 0.71
PRPF40A-201ENST00000354363 NARFQ9UHQ1 456 aa19.46■□□□□ 0.71
PRPF40A-201ENST00000354363 SBF1O95248 1867 aa19.45■□□□□ 0.7
PRPF40A-201ENST00000354363 GNAT3A8MTJ3 354 aa19.45■□□□□ 0.7
PRPF40A-201ENST00000354363 TTC5Q8N0Z6 440 aa19.44■□□□□ 0.7
PRPF40A-201ENST00000354363 KIF3CO14782 793 aa19.43■□□□□ 0.7
PRPF40A-201ENST00000354363 TEFQ10587 303 aa19.43■□□□□ 0.7
PRPF40A-201ENST00000354363 NFIXQ14938 502 aa19.43■□□□□ 0.7
PRPF40A-201ENST00000354363 BCL2L12Q9HB09 334 aa19.43■□□□□ 0.7
PRPF40A-201ENST00000354363 DLEC1Q9Y238 1755 aa19.43■□□□□ 0.7
PRPF40A-201ENST00000354363 CANXP27824 592 aaKnown RBP19.43■□□□□ 0.7
PRPF40A-201ENST00000354363 CHRNA5P30532 468 aa19.43■□□□□ 0.7
PRPF40A-201ENST00000354363 DALRD3Q5D0E6 543 aaKnown RBP19.42■□□□□ 0.7
PRPF40A-201ENST00000354363 ZNF790Q6PG37 636 aa19.42■□□□□ 0.7
PRPF40A-201ENST00000354363 ZNF496Q96IT1 587 aaPredicted RBP19.42■□□□□ 0.7
PRPF40A-201ENST00000354363 CFAP53Q96M91 514 aa19.42■□□□□ 0.7
PRPF40A-201ENST00000354363 CEP350Q5VT06 3117 aa19.42■□□□□ 0.7
PRPF40A-201ENST00000354363 STARD3NLO95772 234 aa19.41■□□□□ 0.7
PRPF40A-201ENST00000354363 PRKAR2BP31323 418 aa19.41■□□□□ 0.7
PRPF40A-201ENST00000354363 PHACTR3Q96KR7 559 aa19.41■□□□□ 0.7
PRPF40A-201ENST00000354363 RSPH6AQ9H0K4 717 aa19.41■□□□□ 0.7
PRPF40A-201ENST00000354363 HEG1Q9ULI3 1381 aa19.41■□□□□ 0.7
PRPF40A-201ENST00000354363 CEMIPQ8WUJ3 1361 aa19.4■□□□□ 0.7
PRPF40A-201ENST00000354363 SCN7AQ01118 1682 aa19.4■□□□□ 0.7
PRPF40A-201ENST00000354363 EIF5P55010 431 aaKnown RBP19.4■□□□□ 0.7
PRPF40A-201ENST00000354363 C9orf131Q5VYM1 1079 aa19.39■□□□□ 0.69
PRPF40A-201ENST00000354363 CCDC88AQ3V6T2 1871 aa19.38■□□□□ 0.69
PRPF40A-201ENST00000354363 SERPINB2P05120 415 aa19.38■□□□□ 0.69
PRPF40A-201ENST00000354363 HSPA6P17066 643 aa19.38■□□□□ 0.69
PRPF40A-201ENST00000354363 PPP2R1AP30153 589 aa19.38■□□□□ 0.69
PRPF40A-201ENST00000354363 TEX13AQ9BXU3 409 aaPredicted RBP19.38■□□□□ 0.69
PRPF40A-201ENST00000354363 NUDCQ9Y266 331 aa19.38■□□□□ 0.69
PRPF40A-201ENST00000354363 ANKRD31Q8N7Z5 1873 aa19.38■□□□□ 0.69
PRPF40A-201ENST00000354363 A0A087WZG4 1122 aa19.37■□□□□ 0.69
PRPF40A-201ENST00000354363 FMNL2Q96PY5 1086 aa19.36■□□□□ 0.69
PRPF40A-201ENST00000354363 KCNQ3O43525 872 aa19.36■□□□□ 0.69
PRPF40A-201ENST00000354363 BTBD11A6QL63 1104 aa19.35■□□□□ 0.69
PRPF40A-201ENST00000354363 NMRK2Q9NPI5 230 aa19.35■□□□□ 0.69
PRPF40A-201ENST00000354363 BCORQ6W2J9 1755 aa19.35■□□□□ 0.69
PRPF40A-201ENST00000354363 CARMIL3Q8ND23 1372 aa19.35■□□□□ 0.69
PRPF40A-201ENST00000354363 U2AF1L5P0DN76 240 aaPredicted RBP19.34■□□□□ 0.69
PRPF40A-201ENST00000354363 IL6STP40189 918 aaPredicted RBP19.34■□□□□ 0.69
PRPF40A-201ENST00000354363 U2AF1Q01081 240 aaKnown RBP eCLIP19.34■□□□□ 0.69
PRPF40A-201ENST00000354363 BICDL1Q6ZP65 573 aa19.34■□□□□ 0.69
PRPF40A-201ENST00000354363 DLG5Q8TDM6 1919 aa19.34■□□□□ 0.69
PRPF40A-201ENST00000354363 A1BGP04217 495 aa19.33■□□□□ 0.69
PRPF40A-201ENST00000354363 TBC1D9BQ66K14 1250 aa19.33■□□□□ 0.69
PRPF40A-201ENST00000354363 RNF181Q9P0P0 153 aa19.33■□□□□ 0.69
PRPF40A-201ENST00000354363 TBC1D2BQ9UPU7 963 aa19.33■□□□□ 0.69
PRPF40A-201ENST00000354363 ZNF330Q9Y3S2 320 aaPredicted RBP19.33■□□□□ 0.69
PRPF40A-201ENST00000354363 TOMM70O94826 608 aa19.32■□□□□ 0.68
PRPF40A-201ENST00000354363 C2CD5Q86YS7 1000 aa19.32■□□□□ 0.68
PRPF40A-201ENST00000354363 COL11A2P13942 1736 aaPredicted RBP19.31■□□□□ 0.68
PRPF40A-201ENST00000354363 TTLL6Q8N841 843 aa19.31■□□□□ 0.68
PRPF40A-201ENST00000354363 TNRC6CQ9HCJ0 1690 aaKnown RBP19.3■□□□□ 0.68
PRPF40A-201ENST00000354363 RASSF7Q02833 373 aa19.3■□□□□ 0.68
PRPF40A-201ENST00000354363 MCM10Q7L590 875 aa19.3■□□□□ 0.68
PRPF40A-201ENST00000354363 RTF1Q92541 710 aaKnown RBP19.3■□□□□ 0.68
PRPF40A-201ENST00000354363 USP16Q9Y5T5 823 aa19.3■□□□□ 0.68
PRPF40A-201ENST00000354363 CACNA1SQ13698 1873 aa19.3■□□□□ 0.68
PRPF40A-201ENST00000354363 H0YIN7 160 aa19.29■□□□□ 0.68
PRPF40A-201ENST00000354363 CAMTA2O94983 1202 aa19.29■□□□□ 0.68
PRPF40A-201ENST00000354363 PRAMEF22A3QJZ6 481 aa19.28■□□□□ 0.68
PRPF40A-201ENST00000354363 DCTN1Q14203 1278 aa19.28■□□□□ 0.68
PRPF40A-201ENST00000354363 PRR5LQ6MZQ0 368 aa19.28■□□□□ 0.68
PRPF40A-201ENST00000354363 NPM2Q86SE8 214 aaKnown RBP19.28■□□□□ 0.68
PRPF40A-201ENST00000354363 TIAM2Q8IVF5 1701 aa19.28■□□□□ 0.68
PRPF40A-201ENST00000354363 KDM2BQ8NHM5 1336 aa19.28■□□□□ 0.68
PRPF40A-201ENST00000354363 DICER1Q9UPY3 1922 aaKnown RBP19.27■□□□□ 0.68
PRPF40A-201ENST00000354363 FER1L6Q2WGJ9 1857 aa19.27■□□□□ 0.68
PRPF40A-201ENST00000354363 HTATSF1O43719 755 aaKnown RBP19.27■□□□□ 0.68
PRPF40A-201ENST00000354363 SNRPA1P09661 255 aaKnown RBP19.26■□□□□ 0.67
PRPF40A-201ENST00000354363 PIP4K2AP48426 406 aaPredicted RBP19.26■□□□□ 0.67
PRPF40A-201ENST00000354363 PRELPP51888 382 aa19.26■□□□□ 0.67
PRPF40A-201ENST00000354363 DZIP3Q86Y13 1208 aaKnown RBP19.26■□□□□ 0.67
PRPF40A-201ENST00000354363 CCDC24Q8N4L8 307 aa19.26■□□□□ 0.67
PRPF40A-201ENST00000354363 BRIP1Q9BX63 1249 aa19.26■□□□□ 0.67
PRPF40A-201ENST00000354363 PDE6BP35913 854 aa19.25■□□□□ 0.67
PRPF40A-201ENST00000354363 RBM46Q8TBY0 533 aaKnown RBP19.25■□□□□ 0.67
PRPF40A-201ENST00000354363 SETDB2Q96T68 719 aa19.25■□□□□ 0.67
PRPF40A-201ENST00000354363 PDZRN3Q9UPQ7 1066 aa19.25■□□□□ 0.67
PRPF40A-201ENST00000354363 LAMB4A4D0S4 1761 aa19.25■□□□□ 0.67
PRPF40A-201ENST00000354363 ARFGEF2Q9Y6D5 1785 aa19.25■□□□□ 0.67
PRPF40A-201ENST00000354363 SLX4Q8IY92 1834 aa19.25■□□□□ 0.67
PRPF40A-201ENST00000354363 LMNB1P20700 586 aa19.25■□□□□ 0.67
PRPF40A-201ENST00000354363 APLP1P51693 650 aa19.25■□□□□ 0.67
PRPF40A-201ENST00000354363 ZC3H4Q9UPT8 1303 aaKnown RBP19.25■□□□□ 0.67
PRPF40A-201ENST00000354363 WDR90Q96KV7 1748 aa19.24■□□□□ 0.67
PRPF40A-201ENST00000354363 KDM3BQ7LBC6 1761 aa19.24■□□□□ 0.67
PRPF40A-201ENST00000354363 C16orf71Q8IYS4 520 aaPredicted RBP19.24■□□□□ 0.67
PRPF40A-201ENST00000354363 ZNF622Q969S3 477 aaKnown RBP eCLIP19.24■□□□□ 0.672e-9■■□□□ 11.4
PRPF40A-201ENST00000354363 RRAGCQ9HB90 399 aa19.24■□□□□ 0.67
PRPF40A-201ENST00000354363 NFKBIEO00221 500 aa19.23■□□□□ 0.67
PRPF40A-201ENST00000354363 CNBD1Q8NA66 436 aa19.23■□□□□ 0.67
PRPF40A-201ENST00000354363 TAF7Q15545 349 aaPredicted RBP19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms