RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 KRT28Q7Z3Y7 464 aa26.65■■□□□ 1.86
SHMT1-202ENST00000352886 CAMTA1Q9Y6Y1 1673 aa26.65■■□□□ 1.86
SHMT1-202ENST00000352886 ADCY9O60503 1353 aa26.65■■□□□ 1.86
SHMT1-202ENST00000352886 DBF4Q9UBU7 674 aaPredicted RBP26.65■■□□□ 1.86
SHMT1-202ENST00000352886 AOX1Q06278 1338 aa26.64■■□□□ 1.86
SHMT1-202ENST00000352886 PTMSP20962 102 aa26.64■■□□□ 1.86
SHMT1-202ENST00000352886 PROSER2Q86WR7 435 aaPredicted RBP26.64■■□□□ 1.86
SHMT1-202ENST00000352886 NUTM1Q86Y26 1132 aa26.64■■□□□ 1.86
SHMT1-202ENST00000352886 UNC5CLQ8IV45 518 aa26.64■■□□□ 1.86
SHMT1-202ENST00000352886 OVOS2A0A0G2JMS6 1433 aa26.64■■□□□ 1.85
SHMT1-202ENST00000352886 CLEC17AQ6ZS10 378 aa26.64■■□□□ 1.85
SHMT1-202ENST00000352886 SKOR2Q2VWA4 1001 aaPredicted RBP26.63■■□□□ 1.85
SHMT1-202ENST00000352886 RHPN1Q8TCX5 695 aa26.63■■□□□ 1.85
SHMT1-202ENST00000352886 NUCB2P80303 420 aa26.61■■□□□ 1.85
SHMT1-202ENST00000352886 KIF1AQ12756 1690 aa26.61■■□□□ 1.85
SHMT1-202ENST00000352886 C1orf167Q5SNV9 1468 aa26.61■■□□□ 1.85
SHMT1-202ENST00000352886 GIGYF1O75420 1035 aaPredicted RBP26.61■■□□□ 1.85
SHMT1-202ENST00000352886 ANO2Q9NQ90 1003 aa26.61■■□□□ 1.85
SHMT1-202ENST00000352886 GOLGA6L22H0YM25 854 aa26.6■■□□□ 1.85
SHMT1-202ENST00000352886 BAG4O95429 457 aaKnown RBP26.6■■□□□ 1.85
SHMT1-202ENST00000352886 SIPA1L3O60292 1781 aaPredicted RBP26.6■■□□□ 1.85
SHMT1-202ENST00000352886 ZGPATQ8N5A5 531 aaKnown RBP26.6■■□□□ 1.85
SHMT1-202ENST00000352886 CWC22Q9HCG8 908 aaKnown RBP26.6■■□□□ 1.85
SHMT1-202ENST00000352886 MCCP23508 829 aa26.59■■□□□ 1.85
SHMT1-202ENST00000352886 NEK4P51957 841 aa26.59■■□□□ 1.85
SHMT1-202ENST00000352886 KIF1BPQ96EK5 621 aa26.59■■□□□ 1.85
SHMT1-202ENST00000352886 PROSER3Q2NL68 480 aa26.59■■□□□ 1.85
SHMT1-202ENST00000352886 MAP3K2Q9Y2U5 619 aa26.58■■□□□ 1.85
SHMT1-202ENST00000352886 HEG1Q9ULI3 1381 aa26.58■■□□□ 1.85
SHMT1-202ENST00000352886 PRAMEF22A3QJZ6 481 aa26.58■■□□□ 1.85
SHMT1-202ENST00000352886 CYP2E1P05181 493 aaPredicted RBP26.58■■□□□ 1.85
SHMT1-202ENST00000352886 PKP1Q13835 747 aa26.58■■□□□ 1.85
SHMT1-202ENST00000352886 PALD1Q9ULE6 856 aa26.58■■□□□ 1.85
SHMT1-202ENST00000352886 PANK2Q9BZ23 570 aa26.57■■□□□ 1.84
SHMT1-202ENST00000352886 ERBB3P21860 1342 aa26.57■■□□□ 1.84
SHMT1-202ENST00000352886 MRE11P49959 708 aa26.57■■□□□ 1.84
SHMT1-202ENST00000352886 ZC3H6P61129 1189 aaKnown RBP26.57■■□□□ 1.84
SHMT1-202ENST00000352886 C19orf44Q9H6X5 657 aa26.57■■□□□ 1.84
SHMT1-202ENST00000352886 PI4K2BQ8TCG2 481 aa26.56■■□□□ 1.84
SHMT1-202ENST00000352886 ALS2Q96Q42 1657 aa26.55■■□□□ 1.84
SHMT1-202ENST00000352886 MAP4K4O95819 1239 aaPredicted RBP26.55■■□□□ 1.84
SHMT1-202ENST00000352886 ANAPC15P60006 121 aa26.55■■□□□ 1.84
SHMT1-202ENST00000352886 KSR2Q6VAB6 950 aa26.55■■□□□ 1.84
SHMT1-202ENST00000352886 ADAMTS7Q9UKP4 1686 aa26.54■■□□□ 1.84
SHMT1-202ENST00000352886 HSP90AB4PQ58FF6 505 aa26.54■■□□□ 1.84
SHMT1-202ENST00000352886 IL25Q9H293 177 aa26.54■■□□□ 1.84
SHMT1-202ENST00000352886 C9orf78Q9NZ63 289 aaPredicted RBP26.54■■□□□ 1.84
SHMT1-202ENST00000352886 ISY1Q9ULR0 285 aaKnown RBP26.54■■□□□ 1.84
SHMT1-202ENST00000352886 GRPEL1Q9HAV7 217 aa26.54■■□□□ 1.84
SHMT1-202ENST00000352886 ZBTB4Q9P1Z0 1013 aaPredicted RBP26.54■■□□□ 1.84
SHMT1-202ENST00000352886 ALDH1L1O75891 902 aa26.53■■□□□ 1.84
SHMT1-202ENST00000352886 TMX3Q96JJ7 454 aa26.53■■□□□ 1.84
SHMT1-202ENST00000352886 MTX1Q13505 466 aa26.52■■□□□ 1.84
SHMT1-202ENST00000352886 MST1RQ04912 1400 aa26.52■■□□□ 1.84
SHMT1-202ENST00000352886 MCM2P49736 904 aa26.51■■□□□ 1.84
SHMT1-202ENST00000352886 OS9Q13438 667 aaPredicted RBP26.51■■□□□ 1.84
SHMT1-202ENST00000352886 CWF19L2Q2TBE0 894 aaKnown RBP26.51■■□□□ 1.84
SHMT1-202ENST00000352886 MCTP1Q6DN14 999 aa26.51■■□□□ 1.84
SHMT1-202ENST00000352886 FAM43AQ8N2R8 423 aa26.51■■□□□ 1.84
SHMT1-202ENST00000352886 HYPKQ9NX55 129 aa26.51■■□□□ 1.84
SHMT1-202ENST00000352886 LMTK3Q96Q04 1460 aa26.51■■□□□ 1.83
SHMT1-202ENST00000352886 RAPGEF4Q8WZA2 1011 aa26.5■■□□□ 1.83
SHMT1-202ENST00000352886 DDX49Q9Y6V7 483 aaKnown RBP26.5■■□□□ 1.83
SHMT1-202ENST00000352886 KLHL40Q2TBA0 621 aa26.49■■□□□ 1.83
SHMT1-202ENST00000352886 GAS2L3Q86XJ1 694 aa26.49■■□□□ 1.83
SHMT1-202ENST00000352886 NLRP2Q9NX02 1062 aa26.49■■□□□ 1.83
SHMT1-202ENST00000352886 CNTROBQ8N137 903 aa26.48■■□□□ 1.83
SHMT1-202ENST00000352886 ZDHHC9Q9Y397 364 aa26.48■■□□□ 1.83
SHMT1-202ENST00000352886 SCN11AQ9UI33 1791 aa26.48■■□□□ 1.83
SHMT1-202ENST00000352886 IL17RAQ96F46 866 aa26.48■■□□□ 1.83
SHMT1-202ENST00000352886 DDX21Q9NR30 783 aaKnown RBP eCLIP26.48■■□□□ 1.83
SHMT1-202ENST00000352886 EPB41L2O43491 1005 aaKnown RBP26.47■■□□□ 1.83
SHMT1-202ENST00000352886 DDX17Q92841 729 aaKnown RBP26.47■■□□□ 1.83
SHMT1-202ENST00000352886 AIMP1Q12904 312 aaKnown RBP26.47■■□□□ 1.83
SHMT1-202ENST00000352886 ATF3P18847 181 aa26.46■■□□□ 1.83
SHMT1-202ENST00000352886 SLC39A6Q13433 755 aa26.46■■□□□ 1.83
SHMT1-202ENST00000352886 UPF3BQ9BZI7 483 aaKnown RBP26.46■■□□□ 1.83
SHMT1-202ENST00000352886 USP42Q9H9J4 1324 aaKnown RBP26.46■■□□□ 1.83
SHMT1-202ENST00000352886 HSPA4P34932 840 aa26.46■■□□□ 1.83
SHMT1-202ENST00000352886 ZNF790Q6PG37 636 aa26.46■■□□□ 1.83
SHMT1-202ENST00000352886 NOL8Q76FK4 1167 aaKnown RBP26.46■■□□□ 1.83
SHMT1-202ENST00000352886 CLASRPQ8N2M8 674 aaKnown RBP26.46■■□□□ 1.83
SHMT1-202ENST00000352886 LINS1Q8NG48 757 aa26.46■■□□□ 1.83
SHMT1-202ENST00000352886 HDAC5Q9UQL6 1122 aa26.46■■□□□ 1.83
SHMT1-202ENST00000352886 CRYBG1Q9Y4K1 1723 aa26.46■■□□□ 1.83
SHMT1-202ENST00000352886 NPHP3Q7Z494 1330 aa26.46■■□□□ 1.83
SHMT1-202ENST00000352886 SGSM2O43147 1006 aa26.45■■□□□ 1.83
SHMT1-202ENST00000352886 DDX58O95786 925 aaKnown RBP26.45■■□□□ 1.83
SHMT1-202ENST00000352886 PA2G4Q9UQ80 394 aaKnown RBP26.45■■□□□ 1.83
SHMT1-202ENST00000352886 C5P01031 1676 aa26.45■■□□□ 1.82
SHMT1-202ENST00000352886 TTC41PQ6P2S7 1318 aa26.45■■□□□ 1.82
SHMT1-202ENST00000352886 KDM6AO15550 1401 aaPredicted RBP26.45■■□□□ 1.82
SHMT1-202ENST00000352886 PDIA6Q15084 440 aa26.45■■□□□ 1.82
SHMT1-202ENST00000352886 SLC52A2Q9HAB3 445 aa26.45■■□□□ 1.82
SHMT1-202ENST00000352886 CUL4AQ13619 759 aa26.44■■□□□ 1.82
SHMT1-202ENST00000352886 LMBRD1Q9NUN5 540 aa26.44■■□□□ 1.82
SHMT1-202ENST00000352886 GRM8O00222 908 aa26.44■■□□□ 1.82
SHMT1-202ENST00000352886 GLRX3O76003 335 aaKnown RBP26.44■■□□□ 1.82
SHMT1-202ENST00000352886 TATP17735 454 aaPredicted RBP26.43■■□□□ 1.82
SHMT1-202ENST00000352886 RAD50Q92878 1312 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms