RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 GTPBP4Q9BZE4 634 aaKnown RBP14.81□□□□□ -0.04
USP47-202ENST00000339865 STIM2Q9P246 746 aa14.81□□□□□ -0.04
USP47-202ENST00000339865 CASTP20810 708 aaKnown RBP14.8□□□□□ -0.04
USP47-202ENST00000339865 CCDC121Q6ZUS5 278 aa14.8□□□□□ -0.04
USP47-202ENST00000339865 GNAI3P08754 354 aa14.8□□□□□ -0.04
USP47-202ENST00000339865 FAM160A1Q05DH4 1040 aa14.8□□□□□ -0.04
USP47-202ENST00000339865 SPTY2D1Q68D10 685 aaPredicted RBP14.8□□□□□ -0.04
USP47-202ENST00000339865 FERMT1Q9BQL6 677 aa14.8□□□□□ -0.04
USP47-202ENST00000339865 WWC3Q9ULE0 1092 aa14.8□□□□□ -0.04
USP47-202ENST00000339865 CAPN2P17655 700 aa14.8□□□□□ -0.04
USP47-202ENST00000339865 KIAA0753Q2KHM9 967 aa14.8□□□□□ -0.04
USP47-202ENST00000339865 CCDC144CPQ8IYA2 1237 aa14.8□□□□□ -0.04
USP47-202ENST00000339865 ODF2LQ9ULJ1 636 aa14.8□□□□□ -0.04
USP47-202ENST00000339865 YEATS4O95619 227 aa14.79□□□□□ -0.04
USP47-202ENST00000339865 ACTN2P35609 894 aa14.79□□□□□ -0.04
USP47-202ENST00000339865 MRVI1Q9Y6F6 885 aa14.79□□□□□ -0.04
USP47-202ENST00000339865 CCDC30Q5VVM6 783 aa14.79□□□□□ -0.04
USP47-202ENST00000339865 ANKRD30AQ9BXX3 1397 aa14.79□□□□□ -0.04
USP47-202ENST00000339865 TMC6Q7Z403 805 aa14.79□□□□□ -0.04
USP47-202ENST00000339865 ZEB2O60315 1214 aa14.79□□□□□ -0.04
USP47-202ENST00000339865 RAPGEF4Q8WZA2 1011 aa14.79□□□□□ -0.04
USP47-202ENST00000339865 LRSAM1Q6UWE0 723 aa14.79□□□□□ -0.04
USP47-202ENST00000339865 CCDC170Q8IYT3 715 aa14.79□□□□□ -0.04
USP47-202ENST00000339865 MYO1BO43795 1136 aa14.78□□□□□ -0.04
USP47-202ENST00000339865 RGS22Q8NE09 1264 aa14.78□□□□□ -0.04
USP47-202ENST00000339865 PUF60Q9UHX1 559 aaKnown RBP14.78□□□□□ -0.04
USP47-202ENST00000339865 CCDC114Q96M63 670 aa14.78□□□□□ -0.04
USP47-202ENST00000339865 USP25Q9UHP3 1055 aa14.78□□□□□ -0.04
USP47-202ENST00000339865 PPP4R3AQ6IN85 833 aa14.78□□□□□ -0.04
USP47-202ENST00000339865 FMN1Q68DA7 1419 aa14.78□□□□□ -0.04
USP47-202ENST00000339865 NDC80O14777 642 aa14.78□□□□□ -0.04
USP47-202ENST00000339865 SH3BP5O60239 455 aa14.78□□□□□ -0.04
USP47-202ENST00000339865 DIXDC1Q155Q3 683 aa14.78□□□□□ -0.04
USP47-202ENST00000339865 CCDC12Q8WUD4 166 aaPredicted RBP14.78□□□□□ -0.04
USP47-202ENST00000339865 TERF1P54274 439 aa14.77□□□□□ -0.04
USP47-202ENST00000339865 USP47Q96K76 1375 aa14.77□□□□□ -0.04
USP47-202ENST00000339865 PPP1R12CQ9BZL4 782 aa14.77□□□□□ -0.04
USP47-202ENST00000339865 CKAP2LQ8IYA6 745 aa14.77□□□□□ -0.05
USP47-202ENST00000339865 EBAG9O00559 213 aa14.77□□□□□ -0.05
USP47-202ENST00000339865 ZNF853P0CG23 659 aa14.77□□□□□ -0.05
USP47-202ENST00000339865 ISM2Q6H9L7 571 aa14.77□□□□□ -0.05
USP47-202ENST00000339865 FERMT3Q86UX7 667 aa14.77□□□□□ -0.05
USP47-202ENST00000339865 SEC63Q9UGP8 760 aaKnown RBP14.77□□□□□ -0.05
USP47-202ENST00000339865 PPP6R1Q9UPN7 881 aa14.77□□□□□ -0.05
USP47-202ENST00000339865 WASF1Q92558 559 aa14.77□□□□□ -0.05
USP47-202ENST00000339865 TNIP1Q15025 636 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 PAXBP1Q9Y5B6 917 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 MTIF2P46199 727 aaKnown RBP14.76□□□□□ -0.05
USP47-202ENST00000339865 SPINK5Q9NQ38 1064 aaPredicted RBP14.76□□□□□ -0.05
USP47-202ENST00000339865 DNAJC21Q5F1R6 531 aaKnown RBP14.76□□□□□ -0.05
USP47-202ENST00000339865 BICDL1Q6ZP65 573 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 GCC1Q96CN9 775 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 BEGAINQ9BUH8 593 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 ADCY5O95622 1261 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 TCHPQ9BT92 498 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 TACC1O75410 805 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 GSDMDP57764 484 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 GNG11P61952 73 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 SEPT10Q9P0V9 454 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 CPLX4Q7Z7G2 160 aa14.76□□□□□ -0.05
USP47-202ENST00000339865 TCERG1LQ5VWI1 586 aa14.75□□□□□ -0.05
USP47-202ENST00000339865 SELENOSQ9BQE4 189 aa14.75□□□□□ -0.05
USP47-202ENST00000339865 GUCY1B3Q02153 619 aa14.75□□□□□ -0.05
USP47-202ENST00000339865 PRR16Q569H4 304 aa14.75□□□□□ -0.05
USP47-202ENST00000339865 CNNM3Q8NE01 707 aa14.75□□□□□ -0.05
USP47-202ENST00000339865 ZNF354CQ86Y25 554 aa14.75□□□□□ -0.05
USP47-202ENST00000339865 STMN2Q93045 179 aa14.75□□□□□ -0.05
USP47-202ENST00000339865 NOB1Q9ULX3 412 aaKnown RBP14.75□□□□□ -0.05
USP47-202ENST00000339865 PCK1P35558 622 aa14.75□□□□□ -0.05
USP47-202ENST00000339865 CETN1Q12798 172 aa14.74□□□□□ -0.05
USP47-202ENST00000339865 CCDC144AA2RUR9 1427 aa14.74□□□□□ -0.05
USP47-202ENST00000339865 PRC1O43663 620 aa14.74□□□□□ -0.05
USP47-202ENST00000339865 BIRC2Q13490 618 aa14.74□□□□□ -0.05
USP47-202ENST00000339865 CTAGE6Q86UF2 777 aa14.74□□□□□ -0.05
USP47-202ENST00000339865 SLU7O95391 586 aaKnown RBP14.74□□□□□ -0.05
USP47-202ENST00000339865 WRNQ14191 1432 aaPredicted RBP eCLIP14.74□□□□□ -0.05
USP47-202ENST00000339865 ATP11AP98196 1134 aa14.74□□□□□ -0.05
USP47-202ENST00000339865 SMIM23A6NLE4 172 aa14.73□□□□□ -0.05
USP47-202ENST00000339865 GMNNO75496 209 aa14.73□□□□□ -0.05
USP47-202ENST00000339865 DDX12PQ92771 950 aa14.73□□□□□ -0.05
USP47-202ENST00000339865 A0A1B0GUA9 196 aa14.73□□□□□ -0.05
USP47-202ENST00000339865 GOLGA6L9A6NEM1 432 aa14.73□□□□□ -0.05
USP47-202ENST00000339865 BIN1O00499 593 aa14.73□□□□□ -0.05
USP47-202ENST00000339865 HNRNPMP52272 730 aaKnown RBP eCLIP14.73□□□□□ -0.05
USP47-202ENST00000339865 MPHOSPH8Q99549 860 aa14.73□□□□□ -0.05
USP47-202ENST00000339865 VPS18Q9P253 973 aa14.73□□□□□ -0.05
USP47-202ENST00000339865 ZSCAN25Q6NSZ9 544 aa14.73□□□□□ -0.05
USP47-202ENST00000339865 TRMT1LQ7Z2T5 733 aaKnown RBP14.73□□□□□ -0.05
USP47-202ENST00000339865 BACH2Q9BYV9 841 aa14.73□□□□□ -0.05
USP47-202ENST00000339865 LUC7L2Q9Y383 392 aaKnown RBP14.72□□□□□ -0.05
USP47-202ENST00000339865 MYO10Q9HD67 2058 aa14.72□□□□□ -0.05
USP47-202ENST00000339865 DDX27Q96GQ7 796 aaKnown RBP14.72□□□□□ -0.05
USP47-202ENST00000339865 NEMFO60524 1076 aa14.72□□□□□ -0.05
USP47-202ENST00000339865 IGSF3O75054 1194 aa14.72□□□□□ -0.05
USP47-202ENST00000339865 SELENOOQ9BVL4 669 aa14.72□□□□□ -0.05
USP47-202ENST00000339865 LACTBP83111 547 aaPredicted RBP14.71□□□□□ -0.05
USP47-202ENST00000339865 MMRN2Q9H8L6 949 aa14.71□□□□□ -0.05
USP47-202ENST00000339865 IFI16Q16666 785 aaKnown RBP14.71□□□□□ -0.05
USP47-202ENST00000339865 AACSQ86V21 672 aa14.71□□□□□ -0.05
USP47-202ENST00000339865 ZSCAN31Q96LW9 406 aaPredicted RBP14.71□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms