RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 SRCIN1Q9C0H9 1055 aa11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 ZSCAN16Q9H4T2 348 aaPredicted RBP11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 CLIP2Q9UDT6 1046 aa11.4□□□□□ -0.58
PTCHD4-201ENST00000339488 UHRF1BP1Q6BDS2 1440 aa11.4□□□□□ -0.59
PTCHD4-201ENST00000339488 APBB1O00213 710 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 FBXW10Q5XX13 1052 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 NOB1Q9ULX3 412 aaKnown RBP11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 KDM5DQ9BY66 1539 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 RAD50Q92878 1312 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 TBC1D8O95759 1140 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 SUGP1Q8IWZ8 645 aaKnown RBP11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 C16orf71Q8IYS4 520 aaPredicted RBP11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 LARP6Q9BRS8 491 aaKnown RBP11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 CFAP74Q9C0B2 1584 aa11.39□□□□□ -0.59
PTCHD4-201ENST00000339488 TROQ12816 1431 aaPredicted RBP11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 SWT1Q5T5J6 900 aaKnown RBP11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 NYAP1Q6ZVC0 841 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 FILIP1Q7Z7B0 1213 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 OTUD7AQ8TE49 926 aaPredicted RBP11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 VPS18Q9P253 973 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 DDX19BQ9UMR2 479 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 FRMD3A2A2Y4 597 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 H0YHG0 523 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 LIG3P49916 1009 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 SARNPP82979 210 aaKnown RBP11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 SSH1Q8WYL5 1049 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 ZNF75DP51815 510 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 TCP11L2Q8N4U5 519 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 ZBTB40Q9NUA8 1239 aa11.38□□□□□ -0.59
PTCHD4-201ENST00000339488 PLXNC1O60486 1568 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ASXL2Q76L83 1435 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 SKILP12757 684 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ATP2B2Q01814 1243 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 MORC1Q86VD1 984 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ZNF428Q96B54 188 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 JPH2Q9BR39 696 aaPredicted RBP11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ERBINQ96RT1 1412 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ARID4AP29374 1257 aaPredicted RBP11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 CORO7P57737 925 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 FAXDC2Q96IV6 333 aa11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 ORC3Q9UBD5 711 aaPredicted RBP11.37□□□□□ -0.59
PTCHD4-201ENST00000339488 PLEKHD1A6NEE1 506 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 CAND2O75155 1236 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 TMF1P82094 1093 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 ANO6Q4KMQ2 910 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 NBPF6Q5VWK0 638 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 KCNV1Q6PIU1 500 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 KIRREL3Q8IZU9 778 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 NBPF4Q96M43 638 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 UPF3BQ9BZI7 483 aaKnown RBP11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 CBX8Q9HC52 389 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 USP16Q9Y5T5 823 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 TTC37Q6PGP7 1564 aa11.36□□□□□ -0.59
PTCHD4-201ENST00000339488 N4BP1O75113 896 aaKnown RBP11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 PHACTR2O75167 634 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 SMC2O95347 1197 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 EXOSC9Q06265 439 aaKnown RBP11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 CCDC30Q5VVM6 783 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 JMYQ8N9B5 988 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 UBXN4Q92575 508 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 MRVI1Q9Y6F6 885 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 ATF7IPQ6VMQ6 1270 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 LRRC8AQ8IWT6 810 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 FAM200AQ8TCP9 573 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 CEP89Q96ST8 783 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 UBXN6Q9BZV1 441 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 IRAK4Q9NWZ3 460 aa11.35□□□□□ -0.59
PTCHD4-201ENST00000339488 A0A087WWV3 80 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 SKAP2O75563 359 aaPredicted RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 GNL2Q13823 731 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 TADA2BQ86TJ2 420 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 THOC1Q96FV9 657 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 RABEP2Q9H5N1 569 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 ARGLU1Q9NWB6 273 aaPredicted RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 TCOF1Q13428 1488 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 WDR7Q9Y4E6 1490 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 CCDC171Q6TFL3 1326 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 DAPK1P53355 1430 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 CCDC196A0A1B0GTZ2 297 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 CCDC192P0DO97 292 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 TYRO3Q06418 890 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 EXOC4Q96A65 974 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 EME2A4GXA9 379 aaPredicted RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 CCDC69A6NI79 296 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 TPM1P09493 284 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 HNRNPH1P31943 449 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 SNW1Q13573 536 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 CCAR2Q8N163 923 aaKnown RBP11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 PALD1Q9ULE6 856 aa11.34□□□□□ -0.59
PTCHD4-201ENST00000339488 UBE2HP62256 183 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 NBPF10Q6P3W6 841 aaKnown RBP11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 GIMAP7Q8NHV1 300 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 IVLP07476 585 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 CC2D1AQ6P1N0 951 aaPredicted RBP11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 PLA2G4DQ86XP0 818 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 IQUBQ8NA54 791 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 CARD6Q9BX69 1037 aa11.33□□□□□ -0.6
PTCHD4-201ENST00000339488 PPIP5K1Q6PFW1 1433 aa11.32□□□□□ -0.6
PTCHD4-201ENST00000339488 ABCC10Q5T3U5 1492 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms