RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 ITPRIPQ8IWB1 547 aa14.16□□□□□ -0.14
SHMT2-201ENST00000328923 ZGPATQ8N5A5 531 aaKnown RBP14.16□□□□□ -0.14
SHMT2-201ENST00000328923 ATP2B1P20020 1258 aa14.15□□□□□ -0.14
SHMT2-201ENST00000328923 TDO2P48775 406 aa14.15□□□□□ -0.14
SHMT2-201ENST00000328923 CHD1LQ86WJ1 897 aa14.15□□□□□ -0.14
SHMT2-201ENST00000328923 TXLNBQ8N3L3 684 aa14.15□□□□□ -0.14
SHMT2-201ENST00000328923 STAG3Q9UJ98 1225 aa14.15□□□□□ -0.14
SHMT2-201ENST00000328923 LRRFIP2Q9Y608 721 aaKnown RBP14.15□□□□□ -0.14
SHMT2-201ENST00000328923 RAD50Q92878 1312 aa14.15□□□□□ -0.14
SHMT2-201ENST00000328923 FAM184AQ8NB25 1140 aa14.15□□□□□ -0.14
SHMT2-201ENST00000328923 SH3BP1Q9Y3L3 701 aa14.15□□□□□ -0.14
SHMT2-201ENST00000328923 TICAM2Q86XR7 235 aa14.14□□□□□ -0.15
SHMT2-201ENST00000328923 A2ML1A8K2U0 1454 aa14.14□□□□□ -0.15
SHMT2-201ENST00000328923 TNRQ92752 1358 aa14.14□□□□□ -0.15
SHMT2-201ENST00000328923 A0A1B0GUL7 405 aa14.14□□□□□ -0.15
SHMT2-201ENST00000328923 AP5Z1O43299 807 aa14.14□□□□□ -0.15
SHMT2-201ENST00000328923 HCLS1P14317 486 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-201ENST00000328923 ELF2Q15723 593 aa14.14□□□□□ -0.15
SHMT2-201ENST00000328923 SRLQ86TD4 932 aa14.14□□□□□ -0.15
SHMT2-201ENST00000328923 CFAP44Q96MT7 982 aa14.14□□□□□ -0.15
SHMT2-201ENST00000328923 GTF3C5Q9Y5Q8 519 aaPredicted RBP14.14□□□□□ -0.15
SHMT2-201ENST00000328923 ANKRD36BQ8N2N9 1353 aa14.14□□□□□ -0.15
SHMT2-201ENST00000328923 CCDC189A1A4V9 331 aa14.13□□□□□ -0.15
SHMT2-201ENST00000328923 KDM4AO75164 1064 aa14.13□□□□□ -0.15
SHMT2-201ENST00000328923 ST5P78524 1137 aa14.13□□□□□ -0.15
SHMT2-201ENST00000328923 ZSCAN26Q16670 478 aa14.13□□□□□ -0.15
SHMT2-201ENST00000328923 GOLGA6L1Q8N7Z2 621 aa14.13□□□□□ -0.15
SHMT2-201ENST00000328923 SENP3Q9H4L4 574 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-201ENST00000328923 ZNF215Q9UL58 517 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-201ENST00000328923 RRP15Q9Y3B9 282 aaKnown RBP14.13□□□□□ -0.15
SHMT2-201ENST00000328923 TULP4Q9NRJ4 1543 aa14.13□□□□□ -0.15
SHMT2-201ENST00000328923 POLR3GO15318 223 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-201ENST00000328923 IPO8O15397 1037 aaKnown RBP14.13□□□□□ -0.15
SHMT2-201ENST00000328923 MAP2K1Q02750 393 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-201ENST00000328923 TTC31Q49AM3 519 aaPredicted RBP14.13□□□□□ -0.15
SHMT2-201ENST00000328923 ALKQ9UM73 1620 aa14.12□□□□□ -0.15
SHMT2-201ENST00000328923 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.12□□□□□ -0.15
SHMT2-201ENST00000328923 SSH1Q8WYL5 1049 aa14.12□□□□□ -0.15
SHMT2-201ENST00000328923 GCC1Q96CN9 775 aa14.12□□□□□ -0.15
SHMT2-201ENST00000328923 UBR1Q8IWV7 1749 aa14.12□□□□□ -0.15
SHMT2-201ENST00000328923 SMARCE1Q969G3 411 aa14.12□□□□□ -0.15
SHMT2-201ENST00000328923 SYAP1Q96A49 352 aaPredicted RBP14.12□□□□□ -0.15
SHMT2-201ENST00000328923 PAXBP1Q9Y5B6 917 aa14.12□□□□□ -0.15
SHMT2-201ENST00000328923 EVC2Q86UK5 1308 aa14.12□□□□□ -0.15
SHMT2-201ENST00000328923 ZNF592Q92610 1267 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 PUS7Q96PZ0 661 aaKnown RBP14.11□□□□□ -0.15
SHMT2-201ENST00000328923 SLC12A5Q9H2X9 1139 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 DEF6Q9H4E7 631 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 FHOD1Q9Y613 1164 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 PTPRCP08575 1304 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 KIF1CO43896 1103 aaKnown RBP14.11□□□□□ -0.15
SHMT2-201ENST00000328923 PTGS1P23219 599 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 MTHFSP49914 203 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 CCDC91Q7Z6B0 441 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 TMEM57Q8N5G2 664 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 IFT57Q9NWB7 429 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 EXOC6BQ9Y2D4 811 aa14.11□□□□□ -0.15
SHMT2-201ENST00000328923 NPHP1O15259 732 aa14.1□□□□□ -0.15
SHMT2-201ENST00000328923 PLA2G4AP47712 749 aa14.1□□□□□ -0.15
SHMT2-201ENST00000328923 EXOSC9Q06265 439 aaKnown RBP14.1□□□□□ -0.15
SHMT2-201ENST00000328923 RABEP1Q15276 862 aa14.1□□□□□ -0.15
SHMT2-201ENST00000328923 TEX35Q5T0J7 233 aa14.1□□□□□ -0.15
SHMT2-201ENST00000328923 PLCD4Q9BRC7 762 aa14.1□□□□□ -0.15
SHMT2-201ENST00000328923 LNPKQ9C0E8 428 aa14.1□□□□□ -0.15
SHMT2-201ENST00000328923 MED4Q9NPJ6 270 aa14.1□□□□□ -0.15
SHMT2-201ENST00000328923 YTHDC2Q9H6S0 1430 aaKnown RBP14.1□□□□□ -0.15
SHMT2-201ENST00000328923 GSCP56915 257 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-201ENST00000328923 ALDH1L2Q3SY69 923 aa14.1□□□□□ -0.15
SHMT2-201ENST00000328923 TBC1D9Q6ZT07 1266 aa14.1□□□□□ -0.15
SHMT2-201ENST00000328923 TPM3P06753 285 aa14.09□□□□□ -0.15
SHMT2-201ENST00000328923 CWC22Q9HCG8 908 aaKnown RBP14.09□□□□□ -0.15
SHMT2-201ENST00000328923 NOB1Q9ULX3 412 aaKnown RBP14.09□□□□□ -0.15
SHMT2-201ENST00000328923 RIMS2Q9UQ26 1411 aa14.09□□□□□ -0.15
SHMT2-201ENST00000328923 PLEKHG2Q9H7P9 1386 aa14.09□□□□□ -0.15
SHMT2-201ENST00000328923 U2SURPO15042 1029 aaKnown RBP14.09□□□□□ -0.15
SHMT2-201ENST00000328923 GADD45BO75293 160 aaPredicted RBP14.09□□□□□ -0.15
SHMT2-201ENST00000328923 LRMPQ12912 555 aa14.09□□□□□ -0.15
SHMT2-201ENST00000328923 SAFB2Q14151 953 aaKnown RBP eCLIP14.09□□□□□ -0.15
SHMT2-201ENST00000328923 ZNF428Q96B54 188 aa14.09□□□□□ -0.15
SHMT2-201ENST00000328923 RAI14Q9P0K7 980 aa14.09□□□□□ -0.15
SHMT2-201ENST00000328923 ERBB3P21860 1342 aa14.09□□□□□ -0.15
SHMT2-201ENST00000328923 ZNF853P0CG23 659 aa14.08□□□□□ -0.15
SHMT2-201ENST00000328923 CWC15Q9P013 229 aaKnown RBP14.08□□□□□ -0.15
SHMT2-201ENST00000328923 PIK3R4Q99570 1358 aa14.08□□□□□ -0.16
SHMT2-201ENST00000328923 SLFNL1Q499Z3 407 aa14.08□□□□□ -0.16
SHMT2-201ENST00000328923 TSR2Q969E8 191 aaKnown RBP14.08□□□□□ -0.16
SHMT2-201ENST00000328923 CDC45O75419 566 aa14.07□□□□□ -0.16
SHMT2-201ENST00000328923 SETD1AO15047 1707 aaKnown RBP14.07□□□□□ -0.16
SHMT2-201ENST00000328923 SMARCA5O60264 1052 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-201ENST00000328923 PNMA6AP0CW24 399 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-201ENST00000328923 MNS1Q8NEH6 495 aa14.07□□□□□ -0.16
SHMT2-201ENST00000328923 GDPD2Q9HCC8 539 aa14.07□□□□□ -0.16
SHMT2-201ENST00000328923 CCDC9Q9Y3X0 531 aaKnown RBP14.07□□□□□ -0.16
SHMT2-201ENST00000328923 COL3A1P02461 1466 aaPredicted RBP14.07□□□□□ -0.16
SHMT2-201ENST00000328923 PPIP5K1Q6PFW1 1433 aa14.06□□□□□ -0.16
SHMT2-201ENST00000328923 U2AF1L5P0DN76 240 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-201ENST00000328923 U2AF1Q01081 240 aaKnown RBP eCLIP14.06□□□□□ -0.16
SHMT2-201ENST00000328923 FOXD4L6Q3SYB3 417 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-201ENST00000328923 FOXD4L3Q6VB84 417 aaPredicted RBP14.06□□□□□ -0.16
SHMT2-201ENST00000328923 PRAM1Q96QH2 718 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms