RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 MCM3P25205 808 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 GPATCH11Q8N954 259 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 DDX11Q96FC9 970 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 RAB34Q9BZG1 259 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 CCDC96Q2M329 555 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 CCDC89Q8N998 374 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 DDX54Q8TDD1 881 aaKnown RBP13.93□□□□□ -0.18
PCF11-201ENST00000298281 CUL5Q93034 780 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 PRDM11Q9NQV5 511 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 RAI14Q9P0K7 980 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 RTEL1-TNFRSF6BF6WH68 1400 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 A0A1W2PRG0 241 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 FCHSD2O94868 740 aa13.93□□□□□ -0.18
PCF11-201ENST00000298281 UTP14AQ9BVJ6 771 aaKnown RBP13.93□□□□□ -0.18
PCF11-201ENST00000298281 ZNF644Q9H582 1327 aaPredicted RBP13.93□□□□□ -0.18
PCF11-201ENST00000298281 FLIIQ13045 1269 aa13.92□□□□□ -0.18
PCF11-201ENST00000298281 PRPF4BQ13523 1007 aaKnown RBP13.92□□□□□ -0.18
PCF11-201ENST00000298281 PAIP2Q9BPZ3 127 aaKnown RBP13.92□□□□□ -0.18
PCF11-201ENST00000298281 RSPH3Q86UC2 560 aa13.92□□□□□ -0.18
PCF11-201ENST00000298281 C1orf115Q9H7X2 142 aa13.92□□□□□ -0.18
PCF11-201ENST00000298281 KIF5CO60282 957 aa13.92□□□□□ -0.18
PCF11-201ENST00000298281 RAB11FIP3O75154 756 aa13.92□□□□□ -0.18
PCF11-201ENST00000298281 BTBD11A6QL63 1104 aa13.92□□□□□ -0.18
PCF11-201ENST00000298281 ECM2O94769 699 aaPredicted RBP13.92□□□□□ -0.18
PCF11-201ENST00000298281 AIDAQ96BJ3 306 aa13.92□□□□□ -0.18
PCF11-201ENST00000298281 MAP9Q49MG5 647 aa13.92□□□□□ -0.18
PCF11-201ENST00000298281 POGZQ7Z3K3 1410 aa13.92□□□□□ -0.18
PCF11-201ENST00000298281 NOL3O60936 208 aaKnown RBP13.91□□□□□ -0.18
PCF11-201ENST00000298281 KIF20AO95235 890 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 JAKMIP1Q96N16 626 aaKnown RBP13.91□□□□□ -0.18
PCF11-201ENST00000298281 ANKLE2Q86XL3 938 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 SIRT1Q96EB6 747 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 ANAPC4Q9UJX5 808 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 ANKRD30BQ9BXX2 1392 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 POLR3DP05423 398 aaPredicted RBP13.91□□□□□ -0.18
PCF11-201ENST00000298281 ACTN2P35609 894 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 KCNH5Q8NCM2 988 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 MAP3K11Q16584 847 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 IPO4Q8TEX9 1081 aaKnown RBP13.91□□□□□ -0.18
PCF11-201ENST00000298281 ZNF526Q8TF50 670 aaPredicted RBP13.91□□□□□ -0.18
PCF11-201ENST00000298281 MYL6BP14649 208 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 EPSTI1Q96J88 318 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 FAM184BQ9ULE4 1060 aa13.91□□□□□ -0.18
PCF11-201ENST00000298281 ERCC5P28715 1186 aaPredicted RBP13.9□□□□□ -0.18
PCF11-201ENST00000298281 ALS2CR12Q96Q35 445 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 MKRN1Q9UHC7 482 aaKnown RBP13.9□□□□□ -0.18
PCF11-201ENST00000298281 GLRX3O76003 335 aaKnown RBP13.9□□□□□ -0.18
PCF11-201ENST00000298281 KIF1BPQ96EK5 621 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 SAMM50Q9Y512 469 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 CASQ1P31415 396 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 ZSCAN12O43309 604 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 SPTY2D1Q68D10 685 aaPredicted RBP13.9□□□□□ -0.18
PCF11-201ENST00000298281 HAUS7Q99871 368 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 GRPEL1Q9HAV7 217 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 HMGB1P09429 215 aaKnown RBP13.9□□□□□ -0.18
PCF11-201ENST00000298281 FKBP15Q5T1M5 1219 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 SYCP3Q8IZU3 236 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 CCDC144CPQ8IYA2 1237 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 RPUSD2Q8IZ73 545 aaKnown RBP13.9□□□□□ -0.18
PCF11-201ENST00000298281 UBXN4Q92575 508 aa13.9□□□□□ -0.18
PCF11-201ENST00000298281 CDCA7LQ96GN5 454 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 PFDN4Q9NQP4 134 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 KIAA1107Q9UPP5 1409 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 XPCQ01831 940 aaPredicted RBP13.89□□□□□ -0.19
PCF11-201ENST00000298281 HLTFQ14527 1009 aaKnown RBP eCLIP13.89□□□□□ -0.19
PCF11-201ENST00000298281 EHMT1Q9H9B1 1298 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 MKNK2Q9HBH9 465 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 CABP1Q9NZU7 370 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 CCDC63Q8NA47 563 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 FBF1Q8TES7 1133 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 MAP4K4O95819 1239 aaPredicted RBP13.89□□□□□ -0.19
PCF11-201ENST00000298281 ANKIB1Q9P2G1 1089 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 CAVIN4Q5BKX8 364 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 MPNDQ8N594 471 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 TSR2Q969E8 191 aaKnown RBP13.89□□□□□ -0.19
PCF11-201ENST00000298281 KIF5AQ12840 1032 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 AFAP1Q8N556 730 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 BICD1Q96G01 975 aa13.89□□□□□ -0.19
PCF11-201ENST00000298281 MPHOSPH6Q99547 160 aaKnown RBP13.89□□□□□ -0.19
PCF11-201ENST00000298281 SCAND2PQ9GZW5 306 aaPredicted RBP13.89□□□□□ -0.19
PCF11-201ENST00000298281 CFAP100Q494V2 611 aa13.88□□□□□ -0.19
PCF11-201ENST00000298281 GRIN2BQ13224 1484 aa13.88□□□□□ -0.19
PCF11-201ENST00000298281 SLC12A5Q9H2X9 1139 aa13.88□□□□□ -0.19
PCF11-201ENST00000298281 PLEKHH1Q9ULM0 1364 aa13.88□□□□□ -0.19
PCF11-201ENST00000298281 ZBTB16Q05516 673 aa13.88□□□□□ -0.19
PCF11-201ENST00000298281 RUSC2Q8N2Y8 1516 aa13.88□□□□□ -0.19
PCF11-201ENST00000298281 IFIT1P09914 478 aaKnown RBP13.88□□□□□ -0.19
PCF11-201ENST00000298281 CWC27Q6UX04 472 aaKnown RBP13.88□□□□□ -0.19
PCF11-201ENST00000298281 SLF2Q8IX21 1173 aa13.88□□□□□ -0.19
PCF11-201ENST00000298281 GMNNO75496 209 aa13.88□□□□□ -0.19
PCF11-201ENST00000298281 RAD54L2Q9Y4B4 1467 aa13.88□□□□□ -0.19
PCF11-201ENST00000298281 IDH1O75874 414 aaKnown RBP13.87□□□□□ -0.19
PCF11-201ENST00000298281 DAPK1P53355 1430 aa13.87□□□□□ -0.19
PCF11-201ENST00000298281 GNAT3A8MTJ3 354 aa13.87□□□□□ -0.19
PCF11-201ENST00000298281 SFPQP23246 707 aaKnown RBP eCLIP13.87□□□□□ -0.19
PCF11-201ENST00000298281 CUL4BQ13620 913 aa13.87□□□□□ -0.19
PCF11-201ENST00000298281 CCDC6Q16204 474 aa13.87□□□□□ -0.19
PCF11-201ENST00000298281 ATP2B3Q16720 1220 aa13.87□□□□□ -0.19
PCF11-201ENST00000298281 KLHL10Q6JEL2 608 aa13.87□□□□□ -0.19
PCF11-201ENST00000298281 SH2B1Q9NRF2 756 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms