RNA–Protein interactions for RNA: ENST00000291547.9

PKNOX1-201, Transcript of PBX/knotted 1 homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PKNOX1, Length 5,003 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1-201ENST00000291547 RIMS2Q9UQ26 1411 aa12.55□□□□□ -0.4
PKNOX1-201ENST00000291547 CCDC69A6NI79 296 aa12.55□□□□□ -0.4
PKNOX1-201ENST00000291547 ZSCAN12O43309 604 aa12.55□□□□□ -0.4
PKNOX1-201ENST00000291547 SLC4A2P04920 1241 aa12.55□□□□□ -0.4
PKNOX1-201ENST00000291547 TTC39AQ5SRH9 613 aa12.55□□□□□ -0.4
PKNOX1-201ENST00000291547 CHD1LQ86WJ1 897 aa12.55□□□□□ -0.4
PKNOX1-201ENST00000291547 NACAP1Q9BZK3 213 aa12.55□□□□□ -0.4
PKNOX1-201ENST00000291547 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.55□□□□□ -0.4
PKNOX1-201ENST00000291547 PPP2R1AP30153 589 aa12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 CAMK4Q16566 473 aa12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 KIF4BQ2VIQ3 1234 aa12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 JAKMIP3Q5VZ66 844 aa12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 ATP2B2Q01814 1243 aa12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 MAP9Q49MG5 647 aa12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 GTF2F1P35269 517 aaKnown RBP eCLIP12.54□□□□□ -0.44e-7■■■■■ 27
PKNOX1-201ENST00000291547 AEBP2Q6ZN18 517 aaPredicted RBP12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 FERMT3Q86UX7 667 aa12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 DNAJC5Q9H3Z4 198 aa12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 EIF2AK4Q9P2K8 1649 aaKnown RBP12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 DMTNQ08495 405 aa12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 SOGA3Q5TF21 947 aa12.54□□□□□ -0.4
PKNOX1-201ENST00000291547 IMMTQ16891 758 aaKnown RBP12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 GAS2L2Q8NHY3 880 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 SIL1Q9H173 461 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 CDKL5O76039 1030 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 RNF187Q5TA31 235 aaPredicted RBP12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 NUTM2GQ5VZR2 741 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 CTR9Q6PD62 1173 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 KDM5DQ9BY66 1539 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 NPATQ14207 1427 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 ATF7IPQ6VMQ6 1270 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 CCDC91Q7Z6B0 441 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 GPATCH11Q8N954 259 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 CNNM1Q9NRU3 951 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 AMOTL2Q9Y2J4 779 aa12.53□□□□□ -0.4
PKNOX1-201ENST00000291547 KIF5CO60282 957 aa12.52□□□□□ -0.4
PKNOX1-201ENST00000291547 NLRP6P59044 892 aa12.52□□□□□ -0.4
PKNOX1-201ENST00000291547 NF2P35240 595 aa12.52□□□□□ -0.4
PKNOX1-201ENST00000291547 CCT4P50991 539 aaKnown RBP12.52□□□□□ -0.4
PKNOX1-201ENST00000291547 HDGFL1Q5TGJ6 251 aa12.52□□□□□ -0.4
PKNOX1-201ENST00000291547 ZNF692Q9BU19 519 aaPredicted RBP12.52□□□□□ -0.4
PKNOX1-201ENST00000291547 SSR1P43307 286 aaKnown RBP12.52□□□□□ -0.41
PKNOX1-201ENST00000291547 MVPQ14764 893 aaKnown RBP12.52□□□□□ -0.41
PKNOX1-201ENST00000291547 CCDC57Q2TAC2 916 aa12.52□□□□□ -0.41
PKNOX1-201ENST00000291547 ESCO1Q5FWF5 840 aa12.52□□□□□ -0.41
PKNOX1-201ENST00000291547 DDX11Q96FC9 970 aa12.52□□□□□ -0.41
PKNOX1-201ENST00000291547 SRCIN1Q9C0H9 1055 aa12.52□□□□□ -0.41
PKNOX1-201ENST00000291547 TNNT1P13805 278 aa12.51□□□□□ -0.41
PKNOX1-201ENST00000291547 SPA17Q15506 151 aa12.51□□□□□ -0.41
PKNOX1-201ENST00000291547 CWC27Q6UX04 472 aaKnown RBP12.51□□□□□ -0.41
PKNOX1-201ENST00000291547 CROCC2H7BZ55 1655 aa12.51□□□□□ -0.41
PKNOX1-201ENST00000291547 RBM25P49756 843 aaKnown RBP12.51□□□□□ -0.41
PKNOX1-201ENST00000291547 LUZP1Q86V48 1076 aa12.51□□□□□ -0.41
PKNOX1-201ENST00000291547 ZNF397Q8NF99 534 aaPredicted RBP12.51□□□□□ -0.41
PKNOX1-201ENST00000291547 FAM107BQ9H098 131 aa12.51□□□□□ -0.41
PKNOX1-201ENST00000291547 GPRASP1Q5JY77 1395 aa12.51□□□□□ -0.41
PKNOX1-201ENST00000291547 IFFO1Q0D2I5 559 aa12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 SMARCC1Q92922 1105 aaPredicted RBP12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 NUDT16Q96DE0 195 aaKnown RBP12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 GNL3LQ9NVN8 582 aaKnown RBP12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 CASQ1P31415 396 aa12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 KRT32Q14532 448 aa12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 MICALCLQ6ZW33 695 aa12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 C16orf45Q96MC5 204 aaPredicted RBP12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 CCDC61Q9Y6R9 512 aa12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 SMC1AQ14683 1233 aaKnown RBP12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 ANO10Q9NW15 660 aa12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 MCM3P25205 808 aa12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 TRMT1Q9NXH9 659 aaKnown RBP12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 UHRF1BP1Q6BDS2 1440 aa12.5□□□□□ -0.41
PKNOX1-201ENST00000291547 CETN2P41208 172 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 TOP1P11387 765 aaKnown RBP12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 SPECC1Q5M775 1068 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 CCDC183Q5T5S1 534 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 AACSQ86V21 672 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 IL1RAPL2Q9NP60 686 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 RAI14Q9P0K7 980 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 CLIP2Q9UDT6 1046 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 USP25Q9UHP3 1055 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 CTNNA3Q9UI47 895 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 CFAP65Q6ZU64 1925 aaKnown RBP12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 GSTTP1A0A1W2PQM5 241 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 CCDC175P0C221 793 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 KLHL10Q6JEL2 608 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 UBAC1Q9BSL1 405 aa12.49□□□□□ -0.41
PKNOX1-201ENST00000291547 DISP3Q9P2K9 1392 aa12.48□□□□□ -0.41
PKNOX1-201ENST00000291547 PAFAH1B1P43034 410 aa12.48□□□□□ -0.41
PKNOX1-201ENST00000291547 FKBP4Q02790 459 aaKnown RBP eCLIP12.48□□□□□ -0.416e-7■■□□□ 14.1
PKNOX1-201ENST00000291547 ZNF428Q96B54 188 aa12.48□□□□□ -0.41
PKNOX1-201ENST00000291547 SRGAP3O43295 1099 aa12.48□□□□□ -0.41
PKNOX1-201ENST00000291547 CASTP20810 708 aaKnown RBP12.48□□□□□ -0.41
PKNOX1-201ENST00000291547 MEX3CQ5U5Q3 659 aaKnown RBP12.48□□□□□ -0.41
PKNOX1-201ENST00000291547 BCCIPQ9P287 314 aaKnown RBP eCLIP12.48□□□□□ -0.41
PKNOX1-201ENST00000291547 DNA2P51530 1060 aa12.48□□□□□ -0.41
PKNOX1-201ENST00000291547 KIF6Q6ZMV9 814 aa12.48□□□□□ -0.41
PKNOX1-201ENST00000291547 HOMEZQ8IX15 550 aa12.48□□□□□ -0.41
PKNOX1-201ENST00000291547 WASLO00401 505 aaPredicted RBP12.47□□□□□ -0.41
PKNOX1-201ENST00000291547 CCDC83Q8IWF9 413 aa12.47□□□□□ -0.41
PKNOX1-201ENST00000291547 SCAND2PQ9GZW5 306 aaPredicted RBP12.47□□□□□ -0.41
PKNOX1-201ENST00000291547 NSD3Q9BZ95 1437 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms