RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 TEX13AQ9BXU3 409 aaPredicted RBP18.8■□□□□ 0.6
TPM1-202ENST00000288398 NARFQ9UHQ1 456 aa18.8■□□□□ 0.6
TPM1-202ENST00000288398 ZBTB1Q9Y2K1 713 aa18.8■□□□□ 0.6
TPM1-202ENST00000288398 KCPQ6ZWJ8 1503 aa18.79■□□□□ 0.6
TPM1-202ENST00000288398 COL3A1P02461 1466 aaPredicted RBP18.79■□□□□ 0.6
TPM1-202ENST00000288398 POLRMTO00411 1230 aaKnown RBP18.79■□□□□ 0.6
TPM1-202ENST00000288398 KIAA1551Q9HCM1 1747 aa18.78■□□□□ 0.6
TPM1-202ENST00000288398 ZNF330Q9Y3S2 320 aaPredicted RBP18.78■□□□□ 0.6
TPM1-202ENST00000288398 VIRMAQ69YN4 1812 aaKnown RBP18.77■□□□□ 0.6
TPM1-202ENST00000288398 TM4SF1P30408 202 aa18.77■□□□□ 0.6
TPM1-202ENST00000288398 PRKAR2BP31323 418 aa18.77■□□□□ 0.6
TPM1-202ENST00000288398 ZNF790Q6PG37 636 aa18.77■□□□□ 0.6
TPM1-202ENST00000288398 RTF1Q92541 710 aaKnown RBP18.77■□□□□ 0.6
TPM1-202ENST00000288398 ADAMTS7Q9UKP4 1686 aa18.76■□□□□ 0.59
TPM1-202ENST00000288398 U2AF1L5P0DN76 240 aaPredicted RBP18.76■□□□□ 0.59
TPM1-202ENST00000288398 CHRNA5P30532 468 aa18.76■□□□□ 0.59
TPM1-202ENST00000288398 U2AF1Q01081 240 aaKnown RBP eCLIP18.76■□□□□ 0.596e-9■■■■□ 21.7
TPM1-202ENST00000288398 NFIXQ14938 502 aa18.76■□□□□ 0.59
TPM1-202ENST00000288398 FMNL2Q96PY5 1086 aa18.76■□□□□ 0.59
TPM1-202ENST00000288398 KCNA3P22001 575 aa18.75■□□□□ 0.59
TPM1-202ENST00000288398 C9orf131Q5VYM1 1079 aa18.75■□□□□ 0.59
TPM1-202ENST00000288398 IL17REQ8NFR9 667 aa18.75■□□□□ 0.59
TPM1-202ENST00000288398 ZNF496Q96IT1 587 aaPredicted RBP18.75■□□□□ 0.59
TPM1-202ENST00000288398 HEG1Q9ULI3 1381 aa18.75■□□□□ 0.59
TPM1-202ENST00000288398 BTBD11A6QL63 1104 aa18.74■□□□□ 0.59
TPM1-202ENST00000288398 NPHP1O15259 732 aa18.74■□□□□ 0.59
TPM1-202ENST00000288398 SERPINB2P05120 415 aa18.74■□□□□ 0.59
TPM1-202ENST00000288398 NEFMP07197 916 aa18.74■□□□□ 0.59
TPM1-202ENST00000288398 BICDL1Q6ZP65 573 aa18.74■□□□□ 0.59
TPM1-202ENST00000288398 C16orf71Q8IYS4 520 aaPredicted RBP18.74■□□□□ 0.59
TPM1-202ENST00000288398 HSPA6P17066 643 aa18.73■□□□□ 0.59
TPM1-202ENST00000288398 RSPH6AQ9H0K4 717 aa18.73■□□□□ 0.59
TPM1-202ENST00000288398 UBR2Q8IWV8 1755 aa18.73■□□□□ 0.59
TPM1-202ENST00000288398 PPP2R1AP30153 589 aa18.72■□□□□ 0.59
TPM1-202ENST00000288398 RNF181Q9P0P0 153 aa18.72■□□□□ 0.59
TPM1-202ENST00000288398 KDM2BQ8NHM5 1336 aa18.72■□□□□ 0.59
TPM1-202ENST00000288398 H0YIN7 160 aa18.71■□□□□ 0.59
TPM1-202ENST00000288398 KIF3CO14782 793 aa18.71■□□□□ 0.59
TPM1-202ENST00000288398 EIF5P55010 431 aaKnown RBP18.71■□□□□ 0.59
TPM1-202ENST00000288398 PHACTR3Q96KR7 559 aa18.71■□□□□ 0.59
TPM1-202ENST00000288398 ARFGEF1Q9Y6D6 1849 aa18.71■□□□□ 0.59
TPM1-202ENST00000288398 BRCA1P38398 1863 aaKnown RBP18.71■□□□□ 0.59
TPM1-202ENST00000288398 IL6STP40189 918 aaPredicted RBP18.7■□□□□ 0.58
TPM1-202ENST00000288398 C2CD5Q86YS7 1000 aa18.7■□□□□ 0.58
TPM1-202ENST00000288398 CEMIPQ8WUJ3 1361 aa18.69■□□□□ 0.58
TPM1-202ENST00000288398 TOMM70O94826 608 aa18.69■□□□□ 0.58
TPM1-202ENST00000288398 TTLL6Q8N841 843 aa18.69■□□□□ 0.58
TPM1-202ENST00000288398 BCL2L12Q9HB09 334 aa18.69■□□□□ 0.58
TPM1-202ENST00000288398 TBC1D2BQ9UPU7 963 aa18.69■□□□□ 0.58
TPM1-202ENST00000288398 PDZRN3Q9UPQ7 1066 aa18.68■□□□□ 0.58
TPM1-202ENST00000288398 CARMIL3Q8ND23 1372 aa18.68■□□□□ 0.58
TPM1-202ENST00000288398 PDE6BP35913 854 aa18.67■□□□□ 0.58
TPM1-202ENST00000288398 SETDB2Q96T68 719 aa18.67■□□□□ 0.58
TPM1-202ENST00000288398 NMRK2Q9NPI5 230 aa18.67■□□□□ 0.58
TPM1-202ENST00000288398 A1BGP04217 495 aa18.66■□□□□ 0.58
TPM1-202ENST00000288398 TBC1D9BQ66K14 1250 aa18.66■□□□□ 0.58
TPM1-202ENST00000288398 MCM10Q7L590 875 aa18.66■□□□□ 0.58
TPM1-202ENST00000288398 ZNF622Q969S3 477 aaKnown RBP eCLIP18.66■□□□□ 0.586e-7■■□□□ 13.8
TPM1-202ENST00000288398 HTATSF1O43719 755 aaKnown RBP18.65■□□□□ 0.58
TPM1-202ENST00000288398 SNRPA1P09661 255 aaKnown RBP18.65■□□□□ 0.58
TPM1-202ENST00000288398 APLP1P51693 650 aa18.65■□□□□ 0.58
TPM1-202ENST00000288398 ST5P78524 1137 aa18.65■□□□□ 0.58
TPM1-202ENST00000288398 DZIP3Q86Y13 1208 aaKnown RBP18.65■□□□□ 0.58
TPM1-202ENST00000288398 ZNF652Q9Y2D9 606 aa18.65■□□□□ 0.58
TPM1-202ENST00000288398 SIPA1L3O60292 1781 aaPredicted RBP18.65■□□□□ 0.58
TPM1-202ENST00000288398 AFDNP55196 1824 aaKnown RBP18.65■□□□□ 0.58
TPM1-202ENST00000288398 KCNQ3O43525 872 aa18.64■□□□□ 0.57
TPM1-202ENST00000288398 LMNB1P20700 586 aa18.64■□□□□ 0.57
TPM1-202ENST00000288398 CNBD1Q8NA66 436 aa18.64■□□□□ 0.57
TPM1-202ENST00000288398 BRIP1Q9BX63 1249 aa18.64■□□□□ 0.57
TPM1-202ENST00000288398 NRXN2Q9P2S2 1712 aa18.63■□□□□ 0.57
TPM1-202ENST00000288398 RASSF7Q02833 373 aa18.63■□□□□ 0.57
TPM1-202ENST00000288398 ZC3H4Q9UPT8 1303 aaKnown RBP18.63■□□□□ 0.57
TPM1-202ENST00000288398 SCN7AQ01118 1682 aa18.63■□□□□ 0.57
TPM1-202ENST00000288398 CEP350Q5VT06 3117 aa18.63■□□□□ 0.57
TPM1-202ENST00000288398 RBM46Q8TBY0 533 aaKnown RBP18.62■□□□□ 0.57
TPM1-202ENST00000288398 PNNQ9H307 717 aaKnown RBP18.62■□□□□ 0.57
TPM1-202ENST00000288398 CAMTA2O94983 1202 aa18.61■□□□□ 0.57
TPM1-202ENST00000288398 DCTN1Q14203 1278 aa18.61■□□□□ 0.57
TPM1-202ENST00000288398 PRR5LQ6MZQ0 368 aa18.61■□□□□ 0.57
TPM1-202ENST00000288398 USP16Q9Y5T5 823 aa18.61■□□□□ 0.57
TPM1-202ENST00000288398 MAPK8IP3Q9UPT6 1336 aa18.6■□□□□ 0.57
TPM1-202ENST00000288398 TAF7Q15545 349 aaPredicted RBP18.6■□□□□ 0.57
TPM1-202ENST00000288398 CCDC24Q8N4L8 307 aa18.6■□□□□ 0.57
TPM1-202ENST00000288398 RRAGCQ9HB90 399 aa18.6■□□□□ 0.57
TPM1-202ENST00000288398 PIP4K2AP48426 406 aaPredicted RBP18.59■□□□□ 0.57
TPM1-202ENST00000288398 NBPF5PQ86XG9 351 aaPredicted RBP18.59■□□□□ 0.57
TPM1-202ENST00000288398 PNISRQ8TF01 805 aaKnown RBP18.59■□□□□ 0.57
TPM1-202ENST00000288398 ZNF219Q9P2Y4 722 aaPredicted RBP18.59■□□□□ 0.57
TPM1-202ENST00000288398 DLEC1Q9Y238 1755 aa18.59■□□□□ 0.57
TPM1-202ENST00000288398 FSTL1Q12841 308 aa18.58■□□□□ 0.56
TPM1-202ENST00000288398 CLEC4GQ6UXB4 293 aa18.58■□□□□ 0.56
TPM1-202ENST00000288398 CNKSR1Q969H4 720 aa18.58■□□□□ 0.56
TPM1-202ENST00000288398 PRAMEF22A3QJZ6 481 aa18.57■□□□□ 0.56
TPM1-202ENST00000288398 C21orf2O43822 256 aa18.57■□□□□ 0.56
TPM1-202ENST00000288398 SOGA3Q5TF21 947 aa18.57■□□□□ 0.56
TPM1-202ENST00000288398 STYK1Q6J9G0 422 aa18.56■□□□□ 0.56
TPM1-202ENST00000288398 DPY19L2Q6NUT2 758 aa18.56■□□□□ 0.56
TPM1-202ENST00000288398 TNRC6CQ9HCJ0 1690 aaKnown RBP18.56■□□□□ 0.56
TPM1-202ENST00000288398 GLTPD2A6NH11 291 aa18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 98.9 ms