RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 TPM3P06753 285 aa15.78■□□□□ 0.12
NUP54-201ENST00000264883 SLC20A2Q08357 652 aa15.78■□□□□ 0.12
NUP54-201ENST00000264883 TIGD1Q96MW7 591 aa15.78■□□□□ 0.12
NUP54-201ENST00000264883 KIAA0232Q92628 1395 aa15.78■□□□□ 0.12
NUP54-201ENST00000264883 MCM2P49736 904 aa15.77■□□□□ 0.12
NUP54-201ENST00000264883 ANKARQ7Z5J8 1434 aa15.77■□□□□ 0.11
NUP54-201ENST00000264883 HCLS1P14317 486 aaPredicted RBP15.77■□□□□ 0.11
NUP54-201ENST00000264883 HSPA2P54652 639 aa15.77■□□□□ 0.11
NUP54-201ENST00000264883 KCNF1Q9H3M0 494 aa15.77■□□□□ 0.11
NUP54-201ENST00000264883 RGPD8O14715 1765 aaPredicted RBP15.76■□□□□ 0.11
NUP54-201ENST00000264883 HMOX1P09601 288 aa15.76■□□□□ 0.11
NUP54-201ENST00000264883 TERF2Q15554 542 aa15.76■□□□□ 0.11
NUP54-201ENST00000264883 C8orf58Q8NAV2 365 aa15.76■□□□□ 0.11
NUP54-201ENST00000264883 MORC2Q9Y6X9 1032 aaPredicted RBP15.76■□□□□ 0.11
NUP54-201ENST00000264883 PLCB2Q00722 1185 aa15.76■□□□□ 0.11
NUP54-201ENST00000264883 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.76■□□□□ 0.112e-11■■□□□ 11.8
NUP54-201ENST00000264883 TMX3Q96JJ7 454 aa15.76■□□□□ 0.11
NUP54-201ENST00000264883 CCDC183Q5T5S1 534 aa15.75■□□□□ 0.11
NUP54-201ENST00000264883 THUMPD2Q9BTF0 503 aaKnown RBP15.75■□□□□ 0.11
NUP54-201ENST00000264883 HMMRO75330 724 aa15.75■□□□□ 0.11
NUP54-201ENST00000264883 USP48Q86UV5 1035 aa15.75■□□□□ 0.11
NUP54-201ENST00000264883 GDPD2Q9HCC8 539 aa15.75■□□□□ 0.11
NUP54-201ENST00000264883 ACEP12821 1306 aa15.75■□□□□ 0.11
NUP54-201ENST00000264883 SSH2Q76I76 1423 aa15.75■□□□□ 0.11
NUP54-201ENST00000264883 STRCQ7RTU9 1775 aa15.74■□□□□ 0.11
NUP54-201ENST00000264883 USP6P35125 1406 aa15.74■□□□□ 0.11
NUP54-201ENST00000264883 ERC2O15083 957 aa15.74■□□□□ 0.11
NUP54-201ENST00000264883 MAPK8IP2Q13387 824 aaPredicted RBP15.74■□□□□ 0.11
NUP54-201ENST00000264883 CEP85Q6P2H3 762 aa15.74■□□□□ 0.11
NUP54-201ENST00000264883 OSBPL3Q9H4L5 887 aa15.74■□□□□ 0.11
NUP54-201ENST00000264883 RGS12O14924 1447 aa15.74■□□□□ 0.11
NUP54-201ENST00000264883 ADGRL3Q9HAR2 1447 aa15.74■□□□□ 0.11
NUP54-201ENST00000264883 NUTM2FA1L443 756 aa15.73■□□□□ 0.11
NUP54-201ENST00000264883 SDSP20132 328 aa15.73■□□□□ 0.11
NUP54-201ENST00000264883 FOXD4L6Q3SYB3 417 aaPredicted RBP15.73■□□□□ 0.11
NUP54-201ENST00000264883 FOXD4L3Q6VB84 417 aaPredicted RBP15.73■□□□□ 0.11
NUP54-201ENST00000264883 RTL1A6NKG5 1358 aa15.73■□□□□ 0.11
NUP54-201ENST00000264883 GOLGA6L6A8MZA4 724 aa15.73■□□□□ 0.11
NUP54-201ENST00000264883 ELL2O00472 640 aaPredicted RBP15.73■□□□□ 0.11
NUP54-201ENST00000264883 SMARCA5O60264 1052 aaPredicted RBP15.73■□□□□ 0.11
NUP54-201ENST00000264883 NME9Q86XW9 330 aa15.72■□□□□ 0.11
NUP54-201ENST00000264883 KIF18AQ8NI77 898 aa15.72■□□□□ 0.11
NUP54-201ENST00000264883 EMILIN1Q9Y6C2 1016 aa15.72■□□□□ 0.11
NUP54-201ENST00000264883 SMTNL1A8MU46 457 aa15.72■□□□□ 0.11
NUP54-201ENST00000264883 NEK4P51957 841 aa15.72■□□□□ 0.11
NUP54-201ENST00000264883 COG3Q96JB2 828 aa15.72■□□□□ 0.11
NUP54-201ENST00000264883 CALCOCO1Q9P1Z2 691 aa15.72■□□□□ 0.11
NUP54-201ENST00000264883 MX1P20591 662 aa15.71■□□□□ 0.11
NUP54-201ENST00000264883 KRT222Q8N1A0 295 aa15.71■□□□□ 0.11
NUP54-201ENST00000264883 TTC21BQ7Z4L5 1316 aa15.71■□□□□ 0.11
NUP54-201ENST00000264883 SPC24Q8NBT2 197 aa15.71■□□□□ 0.11
NUP54-201ENST00000264883 MCCP23508 829 aa15.7■□□□□ 0.1
NUP54-201ENST00000264883 CUL4AQ13619 759 aa15.7■□□□□ 0.1
NUP54-201ENST00000264883 C16orf71Q8IYS4 520 aaPredicted RBP15.7■□□□□ 0.1
NUP54-201ENST00000264883 TULP2O00295 520 aa15.7■□□□□ 0.1
NUP54-201ENST00000264883 EPB41L2O43491 1005 aaKnown RBP15.7■□□□□ 0.1
NUP54-201ENST00000264883 ANAPC15P60006 121 aa15.7■□□□□ 0.1
NUP54-201ENST00000264883 PAXIP1Q6ZW49 1069 aaPredicted RBP15.7■□□□□ 0.1
NUP54-201ENST00000264883 ZRANB1Q9UGI0 708 aa15.7■□□□□ 0.1
NUP54-201ENST00000264883 CHL1O00533 1208 aa15.69■□□□□ 0.1
NUP54-201ENST00000264883 AP5Z1O43299 807 aa15.69■□□□□ 0.1
NUP54-201ENST00000264883 KLHL34Q8N239 644 aa15.69■□□□□ 0.1
NUP54-201ENST00000264883 INTS4Q96HW7 963 aaKnown RBP15.69■□□□□ 0.1
NUP54-201ENST00000264883 MSH6P52701 1360 aa15.69■□□□□ 0.1
NUP54-201ENST00000264883 OVOS2A0A0J9YW53 1432 aa15.69■□□□□ 0.1
NUP54-201ENST00000264883 OVOS2Q6IE36 1432 aa15.69■□□□□ 0.1
NUP54-201ENST00000264883 ERICH4A6NGS2 130 aa15.69■□□□□ 0.1
NUP54-201ENST00000264883 CAPN2P17655 700 aa15.68■□□□□ 0.1
NUP54-201ENST00000264883 NAA30Q147X3 362 aaPredicted RBP15.68■□□□□ 0.1
NUP54-201ENST00000264883 IL17RAQ96F46 866 aa15.68■□□□□ 0.1
NUP54-201ENST00000264883 TMEM87AQ8NBN3 555 aa15.68■□□□□ 0.1
NUP54-201ENST00000264883 WDR33Q9C0J8 1336 aaKnown RBP15.67■□□□□ 0.1
NUP54-201ENST00000264883 ARHGEF10O15013 1369 aa15.67■□□□□ 0.1
NUP54-201ENST00000264883 CCDC112Q8NEF3 446 aa15.67■□□□□ 0.1
NUP54-201ENST00000264883 RBM33Q96EV2 1170 aaKnown RBP15.67■□□□□ 0.1
NUP54-201ENST00000264883 C16orf45Q96MC5 204 aaPredicted RBP15.67■□□□□ 0.1
NUP54-201ENST00000264883 CCT4P50991 539 aaKnown RBP15.67■□□□□ 0.1
NUP54-201ENST00000264883 TPRNQ4KMQ1 711 aa15.67■□□□□ 0.1
NUP54-201ENST00000264883 OTUD7AQ8TE49 926 aaPredicted RBP15.67■□□□□ 0.1
NUP54-201ENST00000264883 PAXBP1Q9Y5B6 917 aa15.67■□□□□ 0.1
NUP54-201ENST00000264883 STRCP1A6NGW2 1772 aa15.66■□□□□ 0.1
NUP54-201ENST00000264883 CHMP4AQ9BY43 222 aa15.66■□□□□ 0.1
NUP54-201ENST00000264883 TSPYL1Q9H0U9 437 aa15.66■□□□□ 0.1
NUP54-201ENST00000264883 TTC21AQ8NDW8 1320 aa15.66■□□□□ 0.1
NUP54-201ENST00000264883 TNNT1P13805 278 aa15.65■□□□□ 0.1
NUP54-201ENST00000264883 FBLN1P23142 703 aa15.65■□□□□ 0.1
NUP54-201ENST00000264883 PTGS1P23219 599 aa15.65■□□□□ 0.1
NUP54-201ENST00000264883 FAM193AP78312 1265 aa15.65■□□□□ 0.1
NUP54-201ENST00000264883 NOL8Q76FK4 1167 aaKnown RBP15.65■□□□□ 0.1
NUP54-201ENST00000264883 FUCA2Q9BTY2 467 aa15.65■□□□□ 0.1
NUP54-201ENST00000264883 TRIM6-TRIM34B2RNG4 842 aa15.65■□□□□ 0.1
NUP54-201ENST00000264883 IRX3P78415 501 aaPredicted RBP15.65■□□□□ 0.1
NUP54-201ENST00000264883 ZNF397Q8NF99 534 aaPredicted RBP15.65■□□□□ 0.1
NUP54-201ENST00000264883 TRIM34Q9BYJ4 488 aa15.65■□□□□ 0.1
NUP54-201ENST00000264883 USP31Q70CQ4 1352 aa15.65■□□□□ 0.1
NUP54-201ENST00000264883 TCHHQ07283 1943 aa15.65■□□□□ 0.1
NUP54-201ENST00000264883 FAM83GA6ND36 823 aa15.64■□□□□ 0.09
NUP54-201ENST00000264883 PDE1AP54750 535 aa15.64■□□□□ 0.09
NUP54-201ENST00000264883 UBE2HP62256 183 aa15.64■□□□□ 0.09
NUP54-201ENST00000264883 NGDNQ8NEJ9 315 aaKnown RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms