RNA–Protein interactions for RNA: ENST00000253794.6

VPS25-201, Transcript of vacuolar protein sorting 25 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS25, Length 1,101 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-201ENST00000253794 PRAMEF22A3QJZ6 481 aa18.25■□□□□ 0.51
VPS25-201ENST00000253794 CT47B1P0C2W7 299 aaPredicted RBP18.25■□□□□ 0.51
VPS25-201ENST00000253794 EXOSC9Q06265 439 aaKnown RBP18.25■□□□□ 0.51
VPS25-201ENST00000253794 AKT1S1Q96B36 256 aa18.25■□□□□ 0.51
VPS25-201ENST00000253794 CHMP4AQ9BY43 222 aa18.25■□□□□ 0.51
VPS25-201ENST00000253794 USP16Q9Y5T5 823 aa18.25■□□□□ 0.51
VPS25-201ENST00000253794 KCNQ4P56696 695 aa18.24■□□□□ 0.51
VPS25-201ENST00000253794 TWISTNBQ3B726 338 aaPredicted RBP18.24■□□□□ 0.51
VPS25-201ENST00000253794 TSPYL6Q8N831 410 aa18.24■□□□□ 0.51
VPS25-201ENST00000253794 VAMP4O75379 141 aa18.23■□□□□ 0.51
VPS25-201ENST00000253794 CRKLP46109 303 aaKnown RBP18.23■□□□□ 0.51
VPS25-201ENST00000253794 INTS5Q6P9B9 1019 aaKnown RBP18.23■□□□□ 0.51
VPS25-201ENST00000253794 ZNF428Q96B54 188 aa18.23■□□□□ 0.51
VPS25-201ENST00000253794 YTHDC1Q96MU7 727 aaKnown RBP18.22■□□□□ 0.51
VPS25-201ENST00000253794 CCDC87Q9NVE4 849 aa18.22■□□□□ 0.51
VPS25-201ENST00000253794 MYH14Q7Z406 1995 aaKnown RBP18.22■□□□□ 0.51
VPS25-201ENST00000253794 QSER1Q2KHR3 1735 aa18.21■□□□□ 0.51
VPS25-201ENST00000253794 ZNF827Q17R98 1081 aa18.21■□□□□ 0.51
VPS25-201ENST00000253794 HDGFL1Q5TGJ6 251 aa18.21■□□□□ 0.51
VPS25-201ENST00000253794 ANO8Q9HCE9 1232 aaPredicted RBP18.21■□□□□ 0.51
VPS25-201ENST00000253794 RPS6KA4O75676 772 aa18.2■□□□□ 0.5
VPS25-201ENST00000253794 IL6STP40189 918 aaPredicted RBP18.2■□□□□ 0.5
VPS25-201ENST00000253794 PDIA6Q15084 440 aa18.2■□□□□ 0.5
VPS25-201ENST00000253794 ZBTB1Q9Y2K1 713 aa18.2■□□□□ 0.5
VPS25-201ENST00000253794 UBR3Q6ZT12 1888 aa18.2■□□□□ 0.5
VPS25-201ENST00000253794 NBPF26B4DH59 902 aa18.19■□□□□ 0.5
VPS25-201ENST00000253794 ELL2O00472 640 aaPredicted RBP18.19■□□□□ 0.5
VPS25-201ENST00000253794 SLC15A2Q16348 729 aa18.19■□□□□ 0.5
VPS25-201ENST00000253794 NBPF14Q5TI25 921 aa18.19■□□□□ 0.5
VPS25-201ENST00000253794 NBPF10Q6P3W6 841 aaKnown RBP18.19■□□□□ 0.5
VPS25-201ENST00000253794 LRP10Q7Z4F1 713 aa18.19■□□□□ 0.5
VPS25-201ENST00000253794 NBPF15Q8N660 670 aa18.19■□□□□ 0.5
VPS25-201ENST00000253794 A1BGP04217 495 aa18.18■□□□□ 0.5
VPS25-201ENST00000253794 ADRA2BP18089 450 aa18.18■□□□□ 0.5
VPS25-201ENST00000253794 SSFA2P28290 1259 aa18.18■□□□□ 0.5
VPS25-201ENST00000253794 EIF5P55010 431 aaKnown RBP18.18■□□□□ 0.5
VPS25-201ENST00000253794 CCDC30Q5VVM6 783 aa18.18■□□□□ 0.5
VPS25-201ENST00000253794 AK7Q96M32 723 aa18.18■□□□□ 0.5
VPS25-201ENST00000253794 DDX21Q9NR30 783 aaKnown RBP eCLIP18.18■□□□□ 0.5
VPS25-201ENST00000253794 STK32BQ9NY57 414 aa18.18■□□□□ 0.5
VPS25-201ENST00000253794 DBF4Q9UBU7 674 aaPredicted RBP18.18■□□□□ 0.5
VPS25-201ENST00000253794 EIF2S2P20042 333 aaKnown RBP18.17■□□□□ 0.5
VPS25-201ENST00000253794 GNPATO15228 680 aa18.16■□□□□ 0.5
VPS25-201ENST00000253794 FLAD1Q8NFF5 587 aa18.16■□□□□ 0.5
VPS25-201ENST00000253794 RTCBQ9Y3I0 505 aaKnown RBP18.16■□□□□ 0.5
VPS25-201ENST00000253794 TUBGCP6Q96RT7 1819 aa18.16■□□□□ 0.5
VPS25-201ENST00000253794 ALDH1L2Q3SY69 923 aa18.15■□□□□ 0.5
VPS25-201ENST00000253794 AMIGO3Q86WK7 504 aa18.15■□□□□ 0.5
VPS25-201ENST00000253794 CHPF2Q9P2E5 772 aa18.15■□□□□ 0.5
VPS25-201ENST00000253794 COL15A1P39059 1388 aa18.15■□□□□ 0.5
VPS25-201ENST00000253794 RGL2O15211 777 aa18.14■□□□□ 0.49
VPS25-201ENST00000253794 BRPF1P55201 1214 aaPredicted RBP18.14■□□□□ 0.49
VPS25-201ENST00000253794 HYPKQ9NX55 129 aa18.14■□□□□ 0.49
VPS25-201ENST00000253794 PNPLA7Q6ZV29 1317 aa18.14■□□□□ 0.49
VPS25-201ENST00000253794 A0A087WZG4 1122 aa18.13■□□□□ 0.49
VPS25-201ENST00000253794 CANXP27824 592 aaKnown RBP18.13■□□□□ 0.49
VPS25-201ENST00000253794 PROSER3Q2NL68 480 aa18.13■□□□□ 0.49
VPS25-201ENST00000253794 TFCP2L1Q9NZI6 479 aa18.13■□□□□ 0.49
VPS25-201ENST00000253794 CACNA1FO60840 1977 aa18.12■□□□□ 0.49
VPS25-201ENST00000253794 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.12■□□□□ 0.49
VPS25-201ENST00000253794 NECTIN2Q92692 538 aa18.12■□□□□ 0.49
VPS25-201ENST00000253794 STK31Q9BXU1 1019 aa18.12■□□□□ 0.49
VPS25-201ENST00000253794 C4AP0C0L4 1744 aa18.12■□□□□ 0.49
VPS25-201ENST00000253794 PIP4K2AP48426 406 aaPredicted RBP18.11■□□□□ 0.49
VPS25-201ENST00000253794 RARSP54136 660 aaKnown RBP18.11■□□□□ 0.49
VPS25-201ENST00000253794 TRAPPC3LQ5T215 181 aa18.11■□□□□ 0.49
VPS25-201ENST00000253794 SSH1Q8WYL5 1049 aa18.11■□□□□ 0.49
VPS25-201ENST00000253794 CASZ1Q86V15 1759 aa18.1■□□□□ 0.49
VPS25-201ENST00000253794 MYL6BP14649 208 aa18.1■□□□□ 0.49
VPS25-201ENST00000253794 ARHGEF1Q92888 912 aaKnown RBP18.1■□□□□ 0.49
VPS25-201ENST00000253794 SCN7AQ01118 1682 aa18.09■□□□□ 0.49
VPS25-201ENST00000253794 USP42Q9H9J4 1324 aaKnown RBP18.09■□□□□ 0.49
VPS25-201ENST00000253794 ANXA1P04083 346 aa18.09■□□□□ 0.49
VPS25-201ENST00000253794 SLC4A2P04920 1241 aa18.09■□□□□ 0.49
VPS25-201ENST00000253794 COL23A1Q86Y22 540 aaPredicted RBP18.09■□□□□ 0.49
VPS25-201ENST00000253794 MRPL50Q8N5N7 158 aaKnown RBP18.09■□□□□ 0.49
VPS25-201ENST00000253794 NARFQ9UHQ1 456 aa18.09■□□□□ 0.49
VPS25-201ENST00000253794 SLC16A10Q8TF71 515 aa18.08■□□□□ 0.48
VPS25-201ENST00000253794 BCORQ6W2J9 1755 aa18.08■□□□□ 0.48
VPS25-201ENST00000253794 ERVV-1B6SEH8 477 aa18.07■□□□□ 0.48
VPS25-201ENST00000253794 PHF14O94880 888 aa18.07■□□□□ 0.48
VPS25-201ENST00000253794 CAMTA2O94983 1202 aa18.07■□□□□ 0.48
VPS25-201ENST00000253794 COPS6Q7L5N1 327 aa18.07■□□□□ 0.48
VPS25-201ENST00000253794 NPM2Q86SE8 214 aaKnown RBP18.07■□□□□ 0.48
VPS25-201ENST00000253794 DZIP3Q86Y13 1208 aaKnown RBP18.07■□□□□ 0.48
VPS25-201ENST00000253794 XAGE3Q8WTP9 111 aa18.07■□□□□ 0.48
VPS25-201ENST00000253794 PHAXQ9H814 394 aaKnown RBP18.07■□□□□ 0.48
VPS25-201ENST00000253794 MAP3K15Q6ZN16 1313 aa18.06■□□□□ 0.48
VPS25-201ENST00000253794 TCERG1O14776 1098 aaKnown RBP18.06■□□□□ 0.48
VPS25-201ENST00000253794 RFC4P35249 363 aa18.06■□□□□ 0.48
VPS25-201ENST00000253794 FLIIQ13045 1269 aa18.06■□□□□ 0.48
VPS25-201ENST00000253794 R3HDM1Q15032 1099 aaKnown RBP18.06■□□□□ 0.48
VPS25-201ENST00000253794 TTLL7Q6ZT98 887 aa18.06■□□□□ 0.48
VPS25-201ENST00000253794 SMIM5Q71RC9 77 aa18.06■□□□□ 0.48
VPS25-201ENST00000253794 SMC4Q9NTJ3 1288 aa18.06■□□□□ 0.48
VPS25-201ENST00000253794 CLEC4GQ6UXB4 293 aa18.05■□□□□ 0.48
VPS25-201ENST00000253794 KIF6Q6ZMV9 814 aa18.05■□□□□ 0.48
VPS25-201ENST00000253794 G2E3Q7L622 706 aa18.05■□□□□ 0.48
VPS25-201ENST00000253794 PTPRCP08575 1304 aa18.04■□□□□ 0.48
VPS25-201ENST00000253794 KIF16BQ96L93 1317 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms