RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 BTBD11A6QL63 1104 aa25.9■■□□□ 1.74
TRIM28-201ENST00000253024 SSH2Q76I76 1423 aa25.9■■□□□ 1.74
TRIM28-201ENST00000253024 KDRP35968 1356 aa25.89■■□□□ 1.74
TRIM28-201ENST00000253024 OSBPL3Q9H4L5 887 aa25.89■■□□□ 1.74
TRIM28-201ENST00000253024 PHF8Q9UPP1 1060 aa25.89■■□□□ 1.74
TRIM28-201ENST00000253024 THEMISQ8N1K5 641 aaPredicted RBP25.89■■□□□ 1.74
TRIM28-201ENST00000253024 TBX22Q9Y458 520 aa25.89■■□□□ 1.74
TRIM28-201ENST00000253024 UBR1Q8IWV7 1749 aa25.89■■□□□ 1.74
TRIM28-201ENST00000253024 TRHP20396 242 aaPredicted RBP25.89■■□□□ 1.73
TRIM28-201ENST00000253024 SALL3Q9BXA9 1300 aa25.88■■□□□ 1.73
TRIM28-201ENST00000253024 RASEFQ8IZ41 740 aa25.88■■□□□ 1.73
TRIM28-201ENST00000253024 KLHDC4Q8TBB5 520 aa25.87■■□□□ 1.73
TRIM28-201ENST00000253024 CWC22Q9HCG8 908 aaKnown RBP25.87■■□□□ 1.73
TRIM28-201ENST00000253024 NRKQ7Z2Y5 1582 aa25.87■■□□□ 1.73
TRIM28-201ENST00000253024 ORAI2Q96SN7 254 aa25.87■■□□□ 1.73
TRIM28-201ENST00000253024 C9orf78Q9NZ63 289 aaPredicted RBP25.86■■□□□ 1.73
TRIM28-201ENST00000253024 TCEANC2Q96MN5 208 aa25.86■■□□□ 1.73
TRIM28-201ENST00000253024 DNAAF4Q8WXU2 420 aa25.86■■□□□ 1.73
TRIM28-201ENST00000253024 EIF4A1P60842 406 aaKnown RBP25.85■■□□□ 1.73
TRIM28-201ENST00000253024 SLC39A6Q13433 755 aa25.85■■□□□ 1.73
TRIM28-201ENST00000253024 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.85■■□□□ 1.73
TRIM28-201ENST00000253024 MAP3K2Q9Y2U5 619 aa25.84■■□□□ 1.73
TRIM28-201ENST00000253024 CHMP3Q9Y3E7 222 aa25.84■■□□□ 1.73
TRIM28-201ENST00000253024 COL9A3Q14050 684 aaPredicted RBP25.83■■□□□ 1.73
TRIM28-201ENST00000253024 ARID3AQ99856 593 aa25.83■■□□□ 1.73
TRIM28-201ENST00000253024 MYL6BP14649 208 aa25.83■■□□□ 1.73
TRIM28-201ENST00000253024 ZC3H6P61129 1189 aaKnown RBP25.83■■□□□ 1.73
TRIM28-201ENST00000253024 REREQ9P2R6 1566 aa25.83■■□□□ 1.72
TRIM28-201ENST00000253024 PLCB2Q00722 1185 aa25.83■■□□□ 1.72
TRIM28-201ENST00000253024 PTMSP20962 102 aa25.82■■□□□ 1.72
TRIM28-201ENST00000253024 CCDC8Q9H0W5 538 aaPredicted RBP25.82■■□□□ 1.72
TRIM28-201ENST00000253024 SSH3Q8TE77 659 aa25.82■■□□□ 1.72
TRIM28-201ENST00000253024 CCDC173Q0VFZ6 552 aa25.81■■□□□ 1.72
TRIM28-201ENST00000253024 PI4K2BQ8TCG2 481 aa25.81■■□□□ 1.72
TRIM28-201ENST00000253024 NDUFB9Q9Y6M9 179 aa25.81■■□□□ 1.72
TRIM28-201ENST00000253024 DIP2AQ14689 1571 aa25.81■■□□□ 1.72
TRIM28-201ENST00000253024 MSNP26038 577 aaKnown RBP25.81■■□□□ 1.72
TRIM28-201ENST00000253024 DDX17Q92841 729 aaKnown RBP25.8■■□□□ 1.72
TRIM28-201ENST00000253024 LARGE1O95461 756 aa25.8■■□□□ 1.72
TRIM28-201ENST00000253024 KIAA1211Q6ZU35 1233 aa25.8■■□□□ 1.72
TRIM28-201ENST00000253024 FIBPO43427 364 aa25.8■■□□□ 1.72
TRIM28-201ENST00000253024 CASTP20810 708 aaKnown RBP25.8■■□□□ 1.72
TRIM28-201ENST00000253024 BEND3Q5T5X7 828 aa25.8■■□□□ 1.72
TRIM28-201ENST00000253024 AK2P54819 239 aa25.79■■□□□ 1.72
TRIM28-201ENST00000253024 CLEC17AQ6ZS10 378 aa25.79■■□□□ 1.72
TRIM28-201ENST00000253024 CNPY2Q9Y2B0 182 aa25.79■■□□□ 1.72
TRIM28-201ENST00000253024 PTH1RQ03431 593 aa25.79■■□□□ 1.72
TRIM28-201ENST00000253024 PRPF40BQ6NWY9 871 aaKnown RBP25.79■■□□□ 1.72
TRIM28-201ENST00000253024 ADCK5Q3MIX3 580 aa25.78■■□□□ 1.72
TRIM28-201ENST00000253024 SNX14Q9Y5W7 946 aa25.78■■□□□ 1.72
TRIM28-201ENST00000253024 KCNJ4P48050 445 aa25.78■■□□□ 1.72
TRIM28-201ENST00000253024 DIAPH3Q9NSV4 1193 aa25.78■■□□□ 1.72
TRIM28-201ENST00000253024 ISY1Q9ULR0 285 aaKnown RBP25.78■■□□□ 1.72
TRIM28-201ENST00000253024 BRD1O95696 1058 aa25.77■■□□□ 1.72
TRIM28-201ENST00000253024 USP48Q86UV5 1035 aa25.77■■□□□ 1.72
TRIM28-201ENST00000253024 CCDC83Q8IWF9 413 aa25.77■■□□□ 1.72
TRIM28-201ENST00000253024 NECAB1Q8N987 351 aa25.77■■□□□ 1.72
TRIM28-201ENST00000253024 PIK3C2AO00443 1686 aa25.77■■□□□ 1.72
TRIM28-201ENST00000253024 C1orf141Q5JVX7 400 aa25.77■■□□□ 1.72
TRIM28-201ENST00000253024 KIF1BPQ96EK5 621 aa25.77■■□□□ 1.72
TRIM28-201ENST00000253024 RGPD1P0DJD0 1748 aa25.77■■□□□ 1.72
TRIM28-201ENST00000253024 ZNF445P59923 1031 aa25.77■■□□□ 1.72
TRIM28-201ENST00000253024 AACSQ86V21 672 aa25.77■■□□□ 1.72
TRIM28-201ENST00000253024 EDC3Q96F86 508 aaKnown RBP25.77■■□□□ 1.72
TRIM28-201ENST00000253024 IP6K1Q92551 441 aa25.76■■□□□ 1.71
TRIM28-201ENST00000253024 HTATSF1O43719 755 aaKnown RBP25.76■■□□□ 1.71
TRIM28-201ENST00000253024 STAP2Q9UGK3 403 aa25.76■■□□□ 1.71
TRIM28-201ENST00000253024 AXIN2Q9Y2T1 843 aa25.76■■□□□ 1.71
TRIM28-201ENST00000253024 CNTROBQ8N137 903 aa25.75■■□□□ 1.71
TRIM28-201ENST00000253024 TLR7Q9NYK1 1049 aaKnown RBP25.75■■□□□ 1.71
TRIM28-201ENST00000253024 CHGBP05060 677 aa25.75■■□□□ 1.71
TRIM28-201ENST00000253024 JAKMIP1Q96N16 626 aaKnown RBP25.75■■□□□ 1.71
TRIM28-201ENST00000253024 SGSM2O43147 1006 aa25.74■■□□□ 1.71
TRIM28-201ENST00000253024 IFIT2P09913 472 aaKnown RBP25.74■■□□□ 1.71
TRIM28-201ENST00000253024 FAM227BQ96M60 508 aa25.74■■□□□ 1.71
TRIM28-201ENST00000253024 ZNF830Q96NB3 372 aaPredicted RBP25.74■■□□□ 1.71
TRIM28-201ENST00000253024 BOLA2Q9H3K6 86 aa25.74■■□□□ 1.71
TRIM28-201ENST00000253024 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP25.74■■□□□ 1.71
TRIM28-201ENST00000253024 HSPA4P34932 840 aa25.74■■□□□ 1.71
TRIM28-201ENST00000253024 PTMAP06454 111 aaKnown RBP25.73■■□□□ 1.71
TRIM28-201ENST00000253024 FAM173BQ6P4H8 233 aa25.73■■□□□ 1.71
TRIM28-201ENST00000253024 FERMT3Q86UX7 667 aa25.73■■□□□ 1.71
TRIM28-201ENST00000253024 RUFY3Q7L099 469 aa25.73■■□□□ 1.71
TRIM28-201ENST00000253024 ZSCAN30Q86W11 494 aa25.73■■□□□ 1.71
TRIM28-201ENST00000253024 CLASRPQ8N2M8 674 aaKnown RBP25.73■■□□□ 1.71
TRIM28-201ENST00000253024 VPS37CA5D8V6 355 aaPredicted RBP25.72■■□□□ 1.71
TRIM28-201ENST00000253024 PPFIA3O75145 1194 aa25.72■■□□□ 1.71
TRIM28-201ENST00000253024 RBM10P98175 930 aaKnown RBP25.72■■□□□ 1.71
TRIM28-201ENST00000253024 LRSAM1Q6UWE0 723 aa25.72■■□□□ 1.71
TRIM28-201ENST00000253024 R3HCC1Q9Y3T6 440 aaKnown RBP25.72■■□□□ 1.71
TRIM28-201ENST00000253024 GCP02774 474 aa25.71■■□□□ 1.71
TRIM28-201ENST00000253024 TOPAZ1Q8N9V7 1692 aa25.71■■□□□ 1.71
TRIM28-201ENST00000253024 ADCY9O60503 1353 aa25.71■■□□□ 1.71
TRIM28-201ENST00000253024 ANKRD24Q8TF21 1146 aa25.71■■□□□ 1.71
TRIM28-201ENST00000253024 LSG1Q9H089 658 aaKnown RBP25.71■■□□□ 1.71
TRIM28-201ENST00000253024 CUL4AQ13619 759 aa25.71■■□□□ 1.71
TRIM28-201ENST00000253024 POLA2Q14181 598 aa25.71■■□□□ 1.71
TRIM28-201ENST00000253024 PPP1R9BQ96SB3 815 aa25.71■■□□□ 1.71
TRIM28-201ENST00000253024 STK3Q13188 491 aa25.7■■□□□ 1.7
TRIM28-201ENST00000253024 TAF6LQ9Y6J9 622 aa25.7■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms