RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 ZSWIM4Q9H7M6 989 aa12.84□□□□□ -0.35
MSH6-201ENST00000234420 KIF4AO95239 1232 aa12.84□□□□□ -0.35
MSH6-201ENST00000234420 CCDC30Q5VVM6 783 aa12.84□□□□□ -0.35
MSH6-201ENST00000234420 JMYQ8N9B5 988 aa12.84□□□□□ -0.35
MSH6-201ENST00000234420 IMMTQ16891 758 aaKnown RBP12.84□□□□□ -0.35
MSH6-201ENST00000234420 CUL5Q93034 780 aa12.84□□□□□ -0.35
MSH6-201ENST00000234420 APBB1IPQ7Z5R6 666 aaPredicted RBP12.84□□□□□ -0.35
MSH6-201ENST00000234420 SWAP70Q9UH65 585 aa12.84□□□□□ -0.35
MSH6-201ENST00000234420 SP4Q02446 784 aa12.84□□□□□ -0.35
MSH6-201ENST00000234420 CAVIN4Q5BKX8 364 aa12.84□□□□□ -0.35
MSH6-201ENST00000234420 SPATA32Q96LK8 384 aa12.84□□□□□ -0.35
MSH6-201ENST00000234420 GPR162Q16538 588 aa12.83□□□□□ -0.35
MSH6-201ENST00000234420 CCDC144CPQ8IYA2 1237 aa12.83□□□□□ -0.35
MSH6-201ENST00000234420 ZWINTO95229 277 aa12.83□□□□□ -0.36
MSH6-201ENST00000234420 FEZ2Q9UHY8 353 aaPredicted RBP12.83□□□□□ -0.36
MSH6-201ENST00000234420 SMTNL1A8MU46 457 aa12.83□□□□□ -0.36
MSH6-201ENST00000234420 NLRP5P59047 1200 aa12.83□□□□□ -0.36
MSH6-201ENST00000234420 STARD3NLO95772 234 aa12.83□□□□□ -0.36
MSH6-201ENST00000234420 PDE1CQ14123 709 aaPredicted RBP12.83□□□□□ -0.36
MSH6-201ENST00000234420 RRS1Q15050 365 aaKnown RBP12.83□□□□□ -0.36
MSH6-201ENST00000234420 ANKLE2Q86XL3 938 aa12.83□□□□□ -0.36
MSH6-201ENST00000234420 ZNF530Q6P9A1 599 aaPredicted RBP12.83□□□□□ -0.36
MSH6-201ENST00000234420 GTPBP4Q9BZE4 634 aaKnown RBP12.83□□□□□ -0.36
MSH6-201ENST00000234420 PDS5BQ9NTI5 1447 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 ANKRD18BA2A2Z9 1011 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 CTNNA2P26232 953 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 LMOD1P29536 600 aaPredicted RBP12.82□□□□□ -0.36
MSH6-201ENST00000234420 TRIM22Q8IYM9 498 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 RSRC1Q96IZ7 334 aaKnown RBP12.82□□□□□ -0.36
MSH6-201ENST00000234420 POTEJP0CG39 1038 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 KIF5BP33176 963 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 SPA17Q15506 151 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 LARP1BQ659C4 914 aaKnown RBP12.82□□□□□ -0.36
MSH6-201ENST00000234420 RASSF4Q9H2L5 321 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 MAP3K11Q16584 847 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 CLIP2Q9UDT6 1046 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 MXRA7P84157 204 aa12.82□□□□□ -0.36
MSH6-201ENST00000234420 RANBP6O60518 1105 aaKnown RBP12.81□□□□□ -0.36
MSH6-201ENST00000234420 ZFYP08048 801 aaPredicted RBP12.81□□□□□ -0.36
MSH6-201ENST00000234420 DDX46Q7L014 1031 aaKnown RBP12.81□□□□□ -0.36
MSH6-201ENST00000234420 POLD1P28340 1107 aa12.81□□□□□ -0.36
MSH6-201ENST00000234420 PICALMQ13492 652 aa12.81□□□□□ -0.36
MSH6-201ENST00000234420 ATRIPQ8WXE1 791 aa12.81□□□□□ -0.36
MSH6-201ENST00000234420 ZNF444Q8N0Y2 327 aaPredicted RBP12.81□□□□□ -0.36
MSH6-201ENST00000234420 ZNF397Q8NF99 534 aaPredicted RBP12.81□□□□□ -0.36
MSH6-201ENST00000234420 PRAM1Q96QH2 718 aa12.81□□□□□ -0.36
MSH6-201ENST00000234420 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.81□□□□□ -0.36
MSH6-201ENST00000234420 API5Q9BZZ5 524 aaKnown RBP12.81□□□□□ -0.36
MSH6-201ENST00000234420 CAPN2P17655 700 aa12.81□□□□□ -0.36
MSH6-201ENST00000234420 PAFAH1B1P43034 410 aa12.81□□□□□ -0.36
MSH6-201ENST00000234420 PRKRIP1Q9H875 184 aaPredicted RBP12.81□□□□□ -0.36
MSH6-201ENST00000234420 FAM114A2Q9NRY5 505 aa12.81□□□□□ -0.36
MSH6-201ENST00000234420 ST5P78524 1137 aa12.8□□□□□ -0.36
MSH6-201ENST00000234420 ROCK1Q13464 1354 aa12.8□□□□□ -0.36
MSH6-201ENST00000234420 RIMBP2O15034 1052 aa12.8□□□□□ -0.36
MSH6-201ENST00000234420 MCM6Q14566 821 aa12.8□□□□□ -0.36
MSH6-201ENST00000234420 ZBTB21Q9ULJ3 1066 aa12.8□□□□□ -0.36
MSH6-201ENST00000234420 BMP2KQ9NSY1 1161 aaPredicted RBP12.8□□□□□ -0.36
MSH6-201ENST00000234420 UACAQ9BZF9 1416 aa12.8□□□□□ -0.36
MSH6-201ENST00000234420 NOL3O60936 208 aaKnown RBP12.8□□□□□ -0.36
MSH6-201ENST00000234420 DIXDC1Q155Q3 683 aa12.8□□□□□ -0.36
MSH6-201ENST00000234420 USP25Q9UHP3 1055 aa12.8□□□□□ -0.36
MSH6-201ENST00000234420 CEP112Q8N8E3 955 aa12.8□□□□□ -0.36
MSH6-201ENST00000234420 BACH2Q9BYV9 841 aa12.8□□□□□ -0.36
MSH6-201ENST00000234420 TTC30AQ86WT1 665 aa12.79□□□□□ -0.36
MSH6-201ENST00000234420 PDZRN3Q9UPQ7 1066 aa12.79□□□□□ -0.36
MSH6-201ENST00000234420 CEP120Q8N960 986 aa12.79□□□□□ -0.36
MSH6-201ENST00000234420 FLIIQ13045 1269 aa12.79□□□□□ -0.36
MSH6-201ENST00000234420 SYCP3Q8IZU3 236 aa12.79□□□□□ -0.36
MSH6-201ENST00000234420 ZNF710Q8N1W2 664 aa12.79□□□□□ -0.36
MSH6-201ENST00000234420 CEP135Q66GS9 1140 aa12.79□□□□□ -0.36
MSH6-201ENST00000234420 HDGFL1Q5TGJ6 251 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 HOOK3Q86VS8 718 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 BANK1Q8NDB2 785 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 CPLX3Q8WVH0 158 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 ARHGAP5Q13017 1502 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 HSF2BPO75031 334 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 SULT6B1Q6IMI4 303 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 AACSQ86V21 672 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 A0A1B0GUA9 196 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 TOP1P11387 765 aaKnown RBP12.78□□□□□ -0.36
MSH6-201ENST00000234420 SYNCQ9H7C4 482 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 POTEB2H3BUK9 544 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 RPUSD2Q8IZ73 545 aaKnown RBP12.78□□□□□ -0.36
MSH6-201ENST00000234420 JAG2Q9Y219 1238 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 CCDC121Q6ZUS5 278 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 AIDAQ96BJ3 306 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 RNF216Q9NWF9 866 aaPredicted RBP12.78□□□□□ -0.36
MSH6-201ENST00000234420 NOD1Q9Y239 953 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 KANK4Q5T7N3 995 aaPredicted RBP12.78□□□□□ -0.36
MSH6-201ENST00000234420 PPP4R4Q6NUP7 873 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 TTC30BQ8N4P2 665 aa12.78□□□□□ -0.36
MSH6-201ENST00000234420 CEP164Q9UPV0 1460 aa12.77□□□□□ -0.36
MSH6-201ENST00000234420 CLNS1AP54105 237 aaKnown RBP12.77□□□□□ -0.36
MSH6-201ENST00000234420 TCHPQ9BT92 498 aa12.77□□□□□ -0.36
MSH6-201ENST00000234420 SNW1Q13573 536 aaKnown RBP12.77□□□□□ -0.37
MSH6-201ENST00000234420 GBP7Q8N8V2 638 aaPredicted RBP12.77□□□□□ -0.37
MSH6-201ENST00000234420 CFAP58Q5T655 872 aa12.77□□□□□ -0.37
MSH6-201ENST00000234420 JARID2Q92833 1246 aaPredicted RBP12.77□□□□□ -0.37
MSH6-201ENST00000234420 CCDC114Q96M63 670 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms