RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 RAB34Q9BZG1 259 aa15.39■□□□□ 0.05
COL1A1-201ENST00000225964 CCDC196A0A1B0GTZ2 297 aa15.39■□□□□ 0.05
COL1A1-201ENST00000225964 HMGN5P82970 282 aaKnown RBP15.39■□□□□ 0.05
COL1A1-201ENST00000225964 IFT140Q96RY7 1462 aa15.39■□□□□ 0.05
COL1A1-201ENST00000225964 MX1P20591 662 aa15.39■□□□□ 0.05
COL1A1-201ENST00000225964 VAT1LQ9HCJ6 419 aa15.39■□□□□ 0.05
COL1A1-201ENST00000225964 MAP3K11Q16584 847 aa15.39■□□□□ 0.05
COL1A1-201ENST00000225964 DYDC1Q8WWB3 177 aa15.39■□□□□ 0.05
COL1A1-201ENST00000225964 COMMD10Q9Y6G5 202 aa15.38■□□□□ 0.05
COL1A1-201ENST00000225964 PHAXQ9H814 394 aaKnown RBP15.38■□□□□ 0.05
COL1A1-201ENST00000225964 GOLGA8AA7E2F4 631 aa15.38■□□□□ 0.05
COL1A1-201ENST00000225964 GOLGA8BA8MQT2 603 aa15.38■□□□□ 0.05
COL1A1-201ENST00000225964 CATIPQ7Z7H3 387 aa15.38■□□□□ 0.05
COL1A1-201ENST00000225964 GLRX3O76003 335 aaKnown RBP15.38■□□□□ 0.05
COL1A1-201ENST00000225964 DNA2P51530 1060 aa15.38■□□□□ 0.05
COL1A1-201ENST00000225964 CCDC61Q9Y6R9 512 aa15.38■□□□□ 0.05
COL1A1-201ENST00000225964 ST5P78524 1137 aa15.38■□□□□ 0.05
COL1A1-201ENST00000225964 C8orf76Q96K31 380 aa15.38■□□□□ 0.05
COL1A1-201ENST00000225964 IFIT3O14879 490 aaKnown RBP15.37■□□□□ 0.05
COL1A1-201ENST00000225964 FGFR1OPO95684 399 aaKnown RBP15.37■□□□□ 0.05
COL1A1-201ENST00000225964 RFC4P35249 363 aa15.37■□□□□ 0.05
COL1A1-201ENST00000225964 A0A087WZG4 1122 aa15.37■□□□□ 0.05
COL1A1-201ENST00000225964 MACROD2A1Z1Q3 448 aa15.37■□□□□ 0.05
COL1A1-201ENST00000225964 SAMM50Q9Y512 469 aa15.37■□□□□ 0.05
COL1A1-201ENST00000225964 FERMT3Q86UX7 667 aa15.37■□□□□ 0.05
COL1A1-201ENST00000225964 VPS36Q86VN1 386 aa15.37■□□□□ 0.05
COL1A1-201ENST00000225964 CCDC194A0A1B0GVG4 234 aa15.37■□□□□ 0.05
COL1A1-201ENST00000225964 CASQ1P31415 396 aa15.37■□□□□ 0.05
COL1A1-201ENST00000225964 CCDC144CPQ8IYA2 1237 aa15.37■□□□□ 0.05
COL1A1-201ENST00000225964 MAP2K1Q02750 393 aaPredicted RBP15.37■□□□□ 0.05
COL1A1-201ENST00000225964 DDX46Q7L014 1031 aaKnown RBP15.37■□□□□ 0.05
COL1A1-201ENST00000225964 PLCD3Q8N3E9 789 aa15.36■□□□□ 0.05
COL1A1-201ENST00000225964 ZBTB3Q9H5J0 574 aa15.36■□□□□ 0.05
COL1A1-201ENST00000225964 CABP5Q9NP86 173 aa15.36■□□□□ 0.05
COL1A1-201ENST00000225964 CTNNA2P26232 953 aa15.36■□□□□ 0.05
COL1A1-201ENST00000225964 RNF41Q9H4P4 317 aaPredicted RBP15.36■□□□□ 0.05
COL1A1-201ENST00000225964 GSTTP1A0A1W2PQM5 241 aa15.36■□□□□ 0.05
COL1A1-201ENST00000225964 MYO1BO43795 1136 aa15.36■□□□□ 0.05
COL1A1-201ENST00000225964 GRPEL1Q9HAV7 217 aa15.36■□□□□ 0.05
COL1A1-201ENST00000225964 SPTY2D1Q68D10 685 aaPredicted RBP15.36■□□□□ 0.05
COL1A1-201ENST00000225964 LRPPRCP42704 1394 aaKnown RBP15.35■□□□□ 0.05
COL1A1-201ENST00000225964 PUF60Q9UHX1 559 aaKnown RBP15.35■□□□□ 0.05
COL1A1-201ENST00000225964 TMX1Q9H3N1 280 aa15.35■□□□□ 0.05
COL1A1-201ENST00000225964 HYPKQ9NX55 129 aa15.35■□□□□ 0.05
COL1A1-201ENST00000225964 EFCAB5A4FU69 1503 aa15.35■□□□□ 0.05
COL1A1-201ENST00000225964 FOXO3O43524 673 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 NME9Q86XW9 330 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 MPHOSPH6Q99547 160 aaKnown RBP15.34■□□□□ 0.05
COL1A1-201ENST00000225964 DAPK1P53355 1430 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 HLA-DOAP06340 250 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 NAIPQ13075 1403 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 VTI1AQ96AJ9 217 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 PHF8Q9UPP1 1060 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 FAM135AQ9P2D6 1515 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 STAMBPO95630 424 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 SYCP3Q8IZU3 236 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 F6X3S4 739 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 CCT2P78371 535 aaKnown RBP15.34■□□□□ 0.05
COL1A1-201ENST00000225964 TDRD12Q587J7 1177 aaKnown RBP15.34■□□□□ 0.05
COL1A1-201ENST00000225964 NUP88Q99567 741 aaPredicted RBP15.34■□□□□ 0.05
COL1A1-201ENST00000225964 KAT14Q9H8E8 782 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 NESP48681 1621 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 USP8P40818 1118 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 NBPF8Q3BBV2 869 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 CALML4Q96GE6 196 aa15.34■□□□□ 0.05
COL1A1-201ENST00000225964 CDC5LQ99459 802 aaKnown RBP15.34■□□□□ 0.05
COL1A1-201ENST00000225964 UQCRHLA0A096LP55 91 aa15.33■□□□□ 0.05
COL1A1-201ENST00000225964 UQCRHP07919 91 aa15.33■□□□□ 0.05
COL1A1-201ENST00000225964 KRT28Q7Z3Y7 464 aa15.33■□□□□ 0.05
COL1A1-201ENST00000225964 BICD1Q96G01 975 aa15.33■□□□□ 0.04
COL1A1-201ENST00000225964 BCCIPQ9P287 314 aaKnown RBP eCLIP15.33■□□□□ 0.04
COL1A1-201ENST00000225964 GOLGA6L10A0A0M3HER8 536 aa15.33■□□□□ 0.04
COL1A1-201ENST00000225964 CLEC11AQ9Y240 323 aa15.33■□□□□ 0.04
COL1A1-201ENST00000225964 MAP3K2Q9Y2U5 619 aa15.33■□□□□ 0.04
COL1A1-201ENST00000225964 HMGB1P09429 215 aaKnown RBP15.33■□□□□ 0.04
COL1A1-201ENST00000225964 HOOK3Q86VS8 718 aa15.33■□□□□ 0.04
COL1A1-201ENST00000225964 WDR70Q9NW82 654 aa15.33■□□□□ 0.04
COL1A1-201ENST00000225964 PRKCSHP14314 528 aaPredicted RBP15.33■□□□□ 0.04
COL1A1-201ENST00000225964 TROQ12816 1431 aaPredicted RBP15.33■□□□□ 0.04
COL1A1-201ENST00000225964 SYCE3A1L190 88 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 LUZP1Q86V48 1076 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 TTC16Q8NEE8 873 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 DNAAF4Q8WXU2 420 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 TSPY2A6NKD2 308 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 PPP1R42Q7Z4L9 355 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 MMRN2Q9H8L6 949 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 AMOTL2Q9Y2J4 779 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 BAG3O95817 575 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 IFFO1Q0D2I5 559 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 CNNM3Q8NE01 707 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 KIF5CO60282 957 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 ANO10Q9NW15 660 aa15.32■□□□□ 0.04
COL1A1-201ENST00000225964 HOMER2Q9NSB8 354 aa15.31■□□□□ 0.04
COL1A1-201ENST00000225964 KIF20AO95235 890 aa15.31■□□□□ 0.04
COL1A1-201ENST00000225964 UBE4AQ14139 1066 aa15.31■□□□□ 0.04
COL1A1-201ENST00000225964 TTF1Q15361 905 aaPredicted RBP15.31■□□□□ 0.04
COL1A1-201ENST00000225964 TCERG1LQ5VWI1 586 aa15.31■□□□□ 0.04
COL1A1-201ENST00000225964 CCDC12Q8WUD4 166 aaPredicted RBP15.31■□□□□ 0.04
COL1A1-201ENST00000225964 PABPN1LA6NDY0 278 aaKnown RBP15.31■□□□□ 0.04
COL1A1-201ENST00000225964 PRC1O43663 620 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms