RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 CRACR2AQ9BSW2 395 aa15.77■□□□□ 0.12
SF3A1-201ENST00000215793 ECHDC1Q9NTX5 307 aa15.77■□□□□ 0.12
SF3A1-201ENST00000215793 DDX19AQ9NUU7 478 aaKnown RBP15.77■□□□□ 0.12
SF3A1-201ENST00000215793 PHF8Q9UPP1 1060 aa15.77■□□□□ 0.12
SF3A1-201ENST00000215793 SLC12A7Q9Y666 1083 aa15.77■□□□□ 0.12
SF3A1-201ENST00000215793 KIF20AO95235 890 aa15.77■□□□□ 0.12
SF3A1-201ENST00000215793 FLIIQ13045 1269 aa15.77■□□□□ 0.12
SF3A1-201ENST00000215793 VPS36Q86VN1 386 aa15.77■□□□□ 0.12
SF3A1-201ENST00000215793 EVI5LQ96CN4 794 aa15.77■□□□□ 0.12
SF3A1-201ENST00000215793 EMILIN1Q9Y6C2 1016 aa15.77■□□□□ 0.12
SF3A1-201ENST00000215793 F6X3S4 739 aa15.77■□□□□ 0.11
SF3A1-201ENST00000215793 WASLO00401 505 aaPredicted RBP15.77■□□□□ 0.11
SF3A1-201ENST00000215793 SLC5A1P13866 664 aa15.77■□□□□ 0.11
SF3A1-201ENST00000215793 TRIM27P14373 513 aa15.77■□□□□ 0.11
SF3A1-201ENST00000215793 USP8P40818 1118 aa15.77■□□□□ 0.11
SF3A1-201ENST00000215793 TSG101Q99816 390 aa15.77■□□□□ 0.11
SF3A1-201ENST00000215793 CCDC8Q9H0W5 538 aaPredicted RBP15.77■□□□□ 0.11
SF3A1-201ENST00000215793 TOP1P11387 765 aaKnown RBP15.77■□□□□ 0.11
SF3A1-201ENST00000215793 BMP2KLQ5H9B9 411 aa15.77■□□□□ 0.11
SF3A1-201ENST00000215793 TTC21BQ7Z4L5 1316 aa15.76■□□□□ 0.11
SF3A1-201ENST00000215793 KIF5CO60282 957 aa15.76■□□□□ 0.11
SF3A1-201ENST00000215793 ZPR1O75312 459 aa15.76■□□□□ 0.11
SF3A1-201ENST00000215793 CDK13Q14004 1512 aaKnown RBP15.76■□□□□ 0.11
SF3A1-201ENST00000215793 DZIP1Q86YF9 867 aaKnown RBP15.76■□□□□ 0.11
SF3A1-201ENST00000215793 CRACR2BQ8N4Y2 399 aaPredicted RBP15.76■□□□□ 0.11
SF3A1-201ENST00000215793 FAM193AP78312 1265 aa15.76■□□□□ 0.11
SF3A1-201ENST00000215793 RRP9O43818 475 aaKnown RBP15.76■□□□□ 0.11
SF3A1-201ENST00000215793 A0A087WZG4 1122 aa15.75■□□□□ 0.11
SF3A1-201ENST00000215793 NEMFO60524 1076 aa15.75■□□□□ 0.11
SF3A1-201ENST00000215793 ANKRD18BA2A2Z9 1011 aa15.75■□□□□ 0.11
SF3A1-201ENST00000215793 TRIM21P19474 475 aaKnown RBP15.75■□□□□ 0.11
SF3A1-201ENST00000215793 GBP2P32456 591 aaPredicted RBP15.75■□□□□ 0.11
SF3A1-201ENST00000215793 ZNF444Q8N0Y2 327 aaPredicted RBP15.75■□□□□ 0.11
SF3A1-201ENST00000215793 TRMT112Q9UI30 125 aaKnown RBP15.75■□□□□ 0.11
SF3A1-201ENST00000215793 ARHGEF11O15085 1522 aa15.75■□□□□ 0.11
SF3A1-201ENST00000215793 MATR3P43243 847 aaKnown RBP eCLIP15.75■□□□□ 0.11
SF3A1-201ENST00000215793 TMEM266Q2M3C6 531 aa15.75■□□□□ 0.11
SF3A1-201ENST00000215793 KLHL10Q6JEL2 608 aa15.75■□□□□ 0.11
SF3A1-201ENST00000215793 CACNA2D4Q7Z3S7 1137 aa15.75■□□□□ 0.11
SF3A1-201ENST00000215793 TBC1D2Q9BYX2 928 aa15.75■□□□□ 0.11
SF3A1-201ENST00000215793 MAP9Q49MG5 647 aa15.75■□□□□ 0.11
SF3A1-201ENST00000215793 RANBP6O60518 1105 aaKnown RBP15.74■□□□□ 0.11
SF3A1-201ENST00000215793 SLF2Q8IX21 1173 aa15.74■□□□□ 0.11
SF3A1-201ENST00000215793 CCDC194A0A1B0GVG4 234 aa15.74■□□□□ 0.11
SF3A1-201ENST00000215793 C11orf95C9JLR9 678 aaPredicted RBP15.74■□□□□ 0.11
SF3A1-201ENST00000215793 MCM3P25205 808 aa15.74■□□□□ 0.11
SF3A1-201ENST00000215793 MPRIPQ6WCQ1 1025 aa15.74■□□□□ 0.11
SF3A1-201ENST00000215793 IFIT3O14879 490 aaKnown RBP15.74■□□□□ 0.11
SF3A1-201ENST00000215793 HMGXB3Q12766 1538 aa15.74■□□□□ 0.11
SF3A1-201ENST00000215793 IL16Q14005 1332 aa15.73■□□□□ 0.11
SF3A1-201ENST00000215793 GOLGA8BA8MQT2 603 aa15.73■□□□□ 0.11
SF3A1-201ENST00000215793 SSRP1Q08945 709 aaKnown RBP15.73■□□□□ 0.11
SF3A1-201ENST00000215793 KIF4BQ2VIQ3 1234 aa15.73■□□□□ 0.11
SF3A1-201ENST00000215793 CNNM3Q8NE01 707 aa15.73■□□□□ 0.11
SF3A1-201ENST00000215793 GOLGA8AA7E2F4 631 aa15.73■□□□□ 0.11
SF3A1-201ENST00000215793 SSFA2P28290 1259 aa15.73■□□□□ 0.11
SF3A1-201ENST00000215793 TNPO1Q92973 898 aaKnown RBP15.73■□□□□ 0.11
SF3A1-201ENST00000215793 TEX13AQ9BXU3 409 aaPredicted RBP15.73■□□□□ 0.11
SF3A1-201ENST00000215793 DNAI2Q9GZS0 605 aa15.73■□□□□ 0.11
SF3A1-201ENST00000215793 CLIP2Q9UDT6 1046 aa15.73■□□□□ 0.11
SF3A1-201ENST00000215793 CAVIN2O95810 425 aa15.73■□□□□ 0.11
SF3A1-201ENST00000215793 SSR1P43307 286 aaKnown RBP15.73■□□□□ 0.11
SF3A1-201ENST00000215793 TTF1Q15361 905 aaPredicted RBP15.73■□□□□ 0.11
SF3A1-201ENST00000215793 CAMSAP2Q08AD1 1489 aa15.72■□□□□ 0.11
SF3A1-201ENST00000215793 ABCC5O15440 1437 aa15.72■□□□□ 0.11
SF3A1-201ENST00000215793 USHBP1Q8N6Y0 703 aa15.72■□□□□ 0.11
SF3A1-201ENST00000215793 DNMBPQ6XZF7 1577 aa15.72■□□□□ 0.11
SF3A1-201ENST00000215793 CATIPQ7Z7H3 387 aa15.72■□□□□ 0.11
SF3A1-201ENST00000215793 CD109Q6YHK3 1445 aa15.72■□□□□ 0.11
SF3A1-201ENST00000215793 GSDMDP57764 484 aa15.72■□□□□ 0.11
SF3A1-201ENST00000215793 ANKIB1Q9P2G1 1089 aa15.72■□□□□ 0.11
SF3A1-201ENST00000215793 AMOTL2Q9Y2J4 779 aa15.72■□□□□ 0.11
SF3A1-201ENST00000215793 ADGRF5Q8IZF2 1346 aa15.72■□□□□ 0.11
SF3A1-201ENST00000215793 USO1O60763 962 aaKnown RBP15.72■□□□□ 0.11
SF3A1-201ENST00000215793 URI1O94763 535 aaPredicted RBP15.71■□□□□ 0.11
SF3A1-201ENST00000215793 HMG20BQ9P0W2 317 aa15.71■□□□□ 0.11
SF3A1-201ENST00000215793 GUCY1B3Q02153 619 aa15.71■□□□□ 0.11
SF3A1-201ENST00000215793 FSIP1Q8NA03 581 aa15.71■□□□□ 0.11
SF3A1-201ENST00000215793 FOXO3O43524 673 aa15.71■□□□□ 0.11
SF3A1-201ENST00000215793 NEBLO76041 1014 aa15.71■□□□□ 0.11
SF3A1-201ENST00000215793 PAFAH1B1P43034 410 aa15.71■□□□□ 0.11
SF3A1-201ENST00000215793 PYM1Q9BRP8 204 aaKnown RBP15.71■□□□□ 0.11
SF3A1-201ENST00000215793 SCAF11Q99590 1463 aaKnown RBP15.71■□□□□ 0.11
SF3A1-201ENST00000215793 CCDC82Q8N4S0 544 aa15.71■□□□□ 0.1
SF3A1-201ENST00000215793 CCDC12Q8WUD4 166 aaPredicted RBP15.71■□□□□ 0.1
SF3A1-201ENST00000215793 STX6O43752 255 aa15.7■□□□□ 0.1
SF3A1-201ENST00000215793 YEATS4O95619 227 aa15.7■□□□□ 0.1
SF3A1-201ENST00000215793 NLRP5P59047 1200 aa15.7■□□□□ 0.1
SF3A1-201ENST00000215793 PPP4R3AQ6IN85 833 aa15.7■□□□□ 0.1
SF3A1-201ENST00000215793 TBC1D9Q6ZT07 1266 aa15.7■□□□□ 0.1
SF3A1-201ENST00000215793 IARSP41252 1262 aaKnown RBP15.7■□□□□ 0.1
SF3A1-201ENST00000215793 IDI1Q13907 227 aa15.7■□□□□ 0.1
SF3A1-201ENST00000215793 CUL5Q93034 780 aa15.7■□□□□ 0.1
SF3A1-201ENST00000215793 PIK3R4Q99570 1358 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 LDHCP07864 332 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 CASQ1P31415 396 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 CKAP2LQ8IYA6 745 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 PLCD4Q9BRC7 762 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 NCOA1Q15788 1441 aa15.69■□□□□ 0.1
SF3A1-201ENST00000215793 KIF5BP33176 963 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms