RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 CECR2Q9BXF3 1484 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 MAP4K4O95819 1239 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-201ENST00000011700 CASQ1P31415 396 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 HNRNPMP52272 730 aaKnown RBP eCLIP7.02□□□□□ -1.29
VPS13D-201ENST00000011700 EIF5P55010 431 aaKnown RBP7.02□□□□□ -1.29
VPS13D-201ENST00000011700 MAP3K9P80192 1104 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 TTF1Q15361 905 aaPredicted RBP7.02□□□□□ -1.29
VPS13D-201ENST00000011700 STK24Q9Y6E0 443 aa7.02□□□□□ -1.29
VPS13D-201ENST00000011700 MYO1BO43795 1136 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 CEP135Q66GS9 1140 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 BICDL1Q6ZP65 573 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 TSGA10Q9BZW7 698 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 SOX12O15370 315 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 FAM193AP78312 1265 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 IFFO1Q0D2I5 559 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 MYH6P13533 1939 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 ERCC6LQ2NKX8 1250 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 ARFGAP2Q8N6H7 521 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 SSX2IPQ9Y2D8 614 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 PTPRCP08575 1304 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 GLRX3O76003 335 aaKnown RBP7.01□□□□□ -1.29
VPS13D-201ENST00000011700 APBB1IPQ7Z5R6 666 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-201ENST00000011700 CCDC155Q8N6L0 562 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 ATP2A2P16615 1042 aaKnown RBP7.01□□□□□ -1.29
VPS13D-201ENST00000011700 MSANTD4Q8NCY6 345 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 CCDC77Q9BR77 488 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 C9orf84Q5VXU9 1444 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 B4DLN1 442 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 MRPL12P52815 198 aaKnown RBP7.01□□□□□ -1.29
VPS13D-201ENST00000011700 IKQ13123 557 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-201ENST00000011700 CFAP157Q5JU67 520 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 TMTC2Q8N394 836 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 CRBNQ96SW2 442 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 SELENOOQ9BVL4 669 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 CROCCQ5TZA2 2017 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 SAFB2Q14151 953 aaKnown RBP eCLIP7.01□□□□□ -1.29
VPS13D-201ENST00000011700 MAP7Q14244 749 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 BMS1Q14692 1282 aaKnown RBP7.01□□□□□ -1.29
VPS13D-201ENST00000011700 NOL8Q76FK4 1167 aaKnown RBP7.01□□□□□ -1.29
VPS13D-201ENST00000011700 CTCFLQ8NI51 663 aaPredicted RBP7.01□□□□□ -1.29
VPS13D-201ENST00000011700 LMBR1Q8WVP7 490 aa7.01□□□□□ -1.29
VPS13D-201ENST00000011700 ZC3H15Q8WU90 426 aaKnown RBP7.01□□□□□ -1.29
VPS13D-201ENST00000011700 CCDC82Q8N4S0 544 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 COG6Q9Y2V7 657 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 RAD50Q92878 1312 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 MYO9BQ13459 2157 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 FERMT2Q96AC1 680 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 TIGD1Q96MW7 591 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 HOMER2Q9NSB8 354 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 WDR97A6NE52 1622 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 OPA1O60313 960 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 STX1AQ16623 288 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 PHF23Q9BUL5 403 aaPredicted RBP7□□□□□ -1.29
VPS13D-201ENST00000011700 ARFGAP3Q9NP61 516 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 BCAP29Q9UHQ4 241 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 PPFIBP2Q8ND30 876 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 PLCD4Q9BRC7 762 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 CAMSAP2Q08AD1 1489 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 GSTTP1A0A1W2PQM5 241 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 IRX4P78413 519 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 TAX1BP1Q86VP1 789 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 STIM2Q9P246 746 aa7□□□□□ -1.29
VPS13D-201ENST00000011700 NOL3O60936 208 aaKnown RBP6.99□□□□□ -1.29
VPS13D-201ENST00000011700 ZWINTO95229 277 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 B4GALNT4Q76KP1 1039 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 IFT74Q96LB3 600 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 STRN4Q9NRL3 753 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 SPG7Q9UQ90 795 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 MYO5CQ9NQX4 1742 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 UQCRHLA0A096LP55 91 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 FCHSD2O94868 740 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 UQCRHP07919 91 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 PPP2R5EQ16537 467 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 IQCA1Q86XH1 822 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 TMCO5BA8MYB1 307 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 PDE4CQ08493 712 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 SPATS2Q86XZ4 545 aaKnown RBP6.99□□□□□ -1.29
VPS13D-201ENST00000011700 LRPPRCP42704 1394 aaKnown RBP6.99□□□□□ -1.29
VPS13D-201ENST00000011700 CFAP100Q494V2 611 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 SNX16P57768 344 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 PLCD3Q8N3E9 789 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 MPHOSPH8Q99549 860 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 MVPQ14764 893 aaKnown RBP6.99□□□□□ -1.29
VPS13D-201ENST00000011700 CACNA2D4Q7Z3S7 1137 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 CENPHQ9H3R5 247 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 ZFYP08048 801 aaPredicted RBP6.99□□□□□ -1.29
VPS13D-201ENST00000011700 AMOTQ4VCS5 1084 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 FAM184BQ9ULE4 1060 aa6.99□□□□□ -1.29
VPS13D-201ENST00000011700 BAZ2BQ9UIF8 2168 aaKnown RBP6.98□□□□□ -1.29
VPS13D-201ENST00000011700 KCNH5Q8NCM2 988 aa6.98□□□□□ -1.29
VPS13D-201ENST00000011700 IQCGQ9H095 443 aaKnown RBP6.98□□□□□ -1.29
VPS13D-201ENST00000011700 TMOD2Q9NZR1 351 aa6.98□□□□□ -1.29
VPS13D-201ENST00000011700 RABGAP1Q9Y3P9 1069 aa6.98□□□□□ -1.29
VPS13D-201ENST00000011700 SYNJ1O43426 1573 aa6.98□□□□□ -1.29
VPS13D-201ENST00000011700 JPH4Q96JJ6 628 aa6.98□□□□□ -1.29
VPS13D-201ENST00000011700 KIF1BPQ96EK5 621 aa6.98□□□□□ -1.29
VPS13D-201ENST00000011700 SMC6Q96SB8 1091 aa6.98□□□□□ -1.29
VPS13D-201ENST00000011700 IFT140Q96RY7 1462 aa6.98□□□□□ -1.29
VPS13D-201ENST00000011700 TOP1P11387 765 aaKnown RBP6.98□□□□□ -1.29
VPS13D-201ENST00000011700 TANGO6Q9C0B7 1094 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 103.1 ms