RNA–Protein interactions for RNA: ENST00000512431.5

DDX41-215, Transcript of DEAD-box helicase 41, human

TSL 5

Gene DDX41, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX41-215	ENST00000512431	ZNF585A	Q6P3V2	769 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	B3GNT6	Q6ZMB0	384 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	LUZP1	Q86V48	1076 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	CYP4Z2P	Q8N1L4	340 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	WFDC11	Q8NEX6	87 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	LRRC46	Q96FV0	321 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	PEX11G	Q96HA9	241 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	ZNF778	Q96MU6	729 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	PRAP1	Q96NZ9	151 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	TTYH2	Q9BSA4	534 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	P2RY12	Q9H244	342 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	TIMMDC1	Q9NPL8	285 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	PNPLA3	Q9NST1	481 aa		11.76	□□□□□ -0.53
DDX41-215	ENST00000512431	INTS1	Q8N201	2190 aa	Known RBP	11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	KCNE1B	A0A087WTH5	132 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	OR14I1	A6ND48	311 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431		A6NNC1	897 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	ARHGEF33	A8MVX0	844 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431		E7EVH7	732 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	PFDN6	O15212	129 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	RDH16	O75452	317 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	RPS3	P23396	243 aa	Known RBP eCLIP	11.75	□□□□□ -0.53	7e-10	■■■■□ 20.3
DDX41-215	ENST00000512431	JAK1	P23458	1154 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	ATP5D	P30049	168 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	PTPN7	P35236	360 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	EIF3B	P55884	814 aa	Known RBP	11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	GPR85	P60893	370 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	EEF1AKMT2	Q5JPI9	291 aa	Known RBP	11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	C11orf63	Q6NUN7	778 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	TMEM214	Q6NUQ4	689 aa	Known RBP	11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	PAMR1	Q6UXH9	720 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	WDR53	Q7Z5U6	358 aa	Predicted RBP	11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	OTUD6B	Q8N6M0	293 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	PPFIBP2	Q8ND30	876 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	PPHLN1	Q8NEY8	458 aa	Known RBP	11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	OR5M9	Q8NGP3	310 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	ZCCHC10	Q8TBK6	192 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	PEX13	Q92968	403 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	TSLP	Q969D9	159 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	ARSG	Q96EG1	525 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	THAP11	Q96EK4	314 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	PKP4	Q99569	1192 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	MACROD1	Q9BQ69	325 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	RBCK1	Q9BYM8	510 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	ZNF395	Q9H8N7	513 aa	Predicted RBP	11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	NEUROD4	Q9HD90	331 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	ABHD10	Q9NUJ1	306 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	TMEM184C	Q9NVA4	438 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	CRIM1	Q9NZV1	1036 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	NAALAD2	Q9Y3Q0	740 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	PCDHA3	Q9Y5H8	950 aa		11.75	□□□□□ -0.53
DDX41-215	ENST00000512431	ABCA4	P78363	2273 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431		A0A0G2JNJ9	132 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	11.74	□□□□□ -0.53
DDX41-215	ENST00000512431		H3BMM5	538 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	PSIP1	O75475	530 aa	Known RBP	11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	SLC16A8	O95907	504 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	SYF2	O95926	243 aa	Known RBP	11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	TUBB4A	P04350	444 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	GLI4	P10075	376 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	CHRM3	P20309	590 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	UQCRC1	P31930	480 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	CTNNA1	P35221	906 aa	Known RBP	11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	MAGEA1	P43355	309 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	RWDD2B	P57060	319 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	PPIA	P62937	165 aa	Known RBP	11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	SNRPN	P63162	240 aa	Known RBP	11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	SKP1	P63208	163 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	SNTB1	Q13884	538 aa	Known RBP	11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	KLHL38	Q2WGJ6	581 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	RGS9BP	Q6ZS82	235 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	PRIMA1	Q86XR5	153 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	SHISA5	Q8N114	240 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	MPP5	Q8N3R9	675 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	FAM222B	Q8WU58	562 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	ZNF480	Q8WV37	535 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	TBC1D20	Q96BZ9	403 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	FAM129A	Q9BZQ8	928 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	LANCL2	Q9NS86	450 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	MARCH4	Q9P2E8	410 aa	Predicted RBP	11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	B4GALT7	Q9UBV7	327 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431		Q9UFV3	132 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	ERVK-11	Q9UQG0	969 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431	TCAF1	Q9Y4C2	921 aa		11.74	□□□□□ -0.53
DDX41-215	ENST00000512431		E7ENX8	843 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	FH	P07954	510 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	SLC35G6	P0C7Q6	338 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	ACAN	P16112	2415 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	HOXC12	P31275	282 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	FMO4	P31512	558 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	GRK3	P35626	688 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	TAP2	Q03519	686 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	HERC3	Q15034	1050 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	FLYWCH1	Q4VC44	716 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	CHSY3	Q70JA7	882 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	CXXC5	Q7LFL8	322 aa	Known RBP	11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	MDGA2	Q7Z553	956 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	VN1R4	Q7Z5H5	301 aa		11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	11.73	□□□□□ -0.53
DDX41-215	ENST00000512431	ASPG	Q86U10	573 aa		11.73	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms