RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 CBLBQ13191 982 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 MFAP5Q13361 173 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 TLR1Q15399 786 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 HECTD2Q5U5R9 776 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 VN1R4Q7Z5H5 301 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 PLD3Q8IV08 490 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 GPATCH11Q8N954 259 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 ANKRD7Q92527 254 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 C19orf60Q96EN9 201 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 ATG10Q9H0Y0 220 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 PLAC1Q9HBJ0 212 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 ARL15Q9NXU5 204 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 CHMP2BQ9UQN3 213 aa18.09■□□□□ 0.49
CCDC28A-203ENST00000617445 IGHV1-45A0A0A0MS14 117 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 BLACEA4D250 179 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 USP27XA6NNY8 438 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 SEC31AO94979 1220 aaKnown RBP18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 BMP10O95393 424 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 DDAH2O95865 285 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 NPPBP16860 134 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 ITGA8P53708 1063 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 PHKG1Q16816 387 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 TMEM214Q6NUQ4 689 aaKnown RBP18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 TMEM205Q6UW68 189 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 SPNS2Q8IVW8 549 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 TBC1D19Q8N5T2 526 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 BBOF1Q8ND07 529 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 ABHD11Q8NFV4 315 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 OR56A3Q8NH54 315 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 SSC4DQ8WTU2 575 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 C8orf44Q96CB5 159 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 TM4SF19Q96DZ7 209 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 PDLIM2Q96JY6 352 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 SARGQ9BW04 601 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 ZFATQ9P243 1243 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 MKL2Q9ULH7 1088 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 NOVA2Q9UNW9 492 aaKnown RBP18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 SVILO95425 2214 aa18.08■□□□□ 0.48
CCDC28A-203ENST00000617445 SCN2AQ99250 2005 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 SCN3AQ9NY46 2000 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 TTI1O43156 1089 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 PRR35P0CG20 571 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 CCR8P51685 355 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 MGAT5Q09328 741 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 ELOAQ14241 798 aaKnown RBP18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 ZNF169Q14929 603 aaPredicted RBP18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 NR6A1Q15406 480 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 HP1BP3Q5SSJ5 553 aaPredicted RBP18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 TRMT10BQ6PF06 316 aaKnown RBP18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 MBOAT1Q6ZNC8 495 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 ASPGQ86U10 573 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 ZC3H7AQ8IWR0 971 aaKnown RBP18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 OR4K1Q8NGD4 311 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 SLC13A3Q8WWT9 602 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 METTL21AQ8WXB1 218 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 FBXL8Q96CD0 374 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 ZNF700Q9H0M5 742 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 ANKHQ9HCJ1 492 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 NSMCE4AQ9NXX6 385 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 SLC22A7Q9Y694 548 aa18.07■□□□□ 0.48
CCDC28A-203ENST00000617445 DYTNA2CJ06 578 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 EFCAB8A8MWE9 144 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 SLC35G6P0C7Q6 338 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 C8orf89P0DMQ9 161 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 IL10P22301 178 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 BCL6P41182 706 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 SKP1P63208 163 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 MRPL49Q13405 166 aaKnown RBP18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 EIF2S3LQ2VIR3 472 aaKnown RBP18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 NIPAL1Q6NVV3 410 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 RPUSD3Q6P087 351 aaKnown RBP18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 STRA8Q7Z7C7 330 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 SLC26A11Q86WA9 606 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 NKAPQ8N5F7 415 aaKnown RBP18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 MFSD9Q8NBP5 474 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 OR9A4Q8NGU2 314 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 OR51Q1Q8NH59 317 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 PRR7Q8TB68 274 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 ALKBH8Q96BT7 664 aaKnown RBP18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 TUBB6Q9BUF5 446 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 MOCS1Q9NZB8 636 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 C19orf25Q9UFG5 118 aaPredicted RBP18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 DOPEY1Q5JWR5 2465 aa18.06■□□□□ 0.48
CCDC28A-203ENST00000617445 ZGRF1Q86YA3 2104 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 ANKUB1A6NFN9 424 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 E7ESA3 106 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 FFAR3O14843 346 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 GPR42O15529 346 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 WFS1O76024 890 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 KLHL18O94889 574 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 CDH1P12830 882 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 SOX11P35716 441 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 EEF1A2Q05639 463 aaKnown RBP18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 PDIA2Q13087 525 aaKnown RBP18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 PWP1Q13610 501 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 HERC3Q15034 1050 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 SYT16Q17RD7 645 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 LINC00696Q6ZRV3 163 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 PSMF1Q92530 271 aa18.05■□□□□ 0.48
CCDC28A-203ENST00000617445 HAS2Q92819 552 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms