RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 LARP4Q71RC2 724 aaKnown RBP eCLIP10.14□□□□□ -0.79
LIG1-220ENST00000601091 FBXL6Q8N531 539 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 C11orf65Q8NCR3 313 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 NANPQ8TBE9 248 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 PANX1Q96RD7 426 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 HIPK3Q9H422 1215 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 TMEM181Q9P2C4 612 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 RNF24Q9Y225 148 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 M0QZQ0 153 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 HAS3O00219 553 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 STK25O00506 426 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 NME4O00746 187 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 LDLRAD4O15165 306 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 KELP23276 732 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 ADRA1AP35348 466 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 AGTR2P50052 363 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 SRP54P61011 504 aaKnown RBP10.14□□□□□ -0.79
LIG1-220ENST00000601091 SNRPD1P62314 119 aaKnown RBP10.14□□□□□ -0.79
LIG1-220ENST00000601091 PWP1Q13610 501 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 OR4D1Q15615 310 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 TSC22D1Q15714 1073 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 NANOGP8Q6NSW7 305 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 CRTC3Q6UUV7 619 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 TPGS1Q6ZTW0 290 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 MRPL10Q7Z7H8 261 aaKnown RBP10.14□□□□□ -0.79
LIG1-220ENST00000601091 NUDT13Q86X67 352 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 ZNF280BQ86YH2 543 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 TMEM199Q8N511 208 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 UPF1Q92900 1129 aaKnown RBP eCLIP10.14□□□□□ -0.79
LIG1-220ENST00000601091 RAB7BQ96AH8 199 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 TMEM159Q96B96 161 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 SLC22A18Q96BI1 424 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 ZNF597Q96LX8 424 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 SSX3Q99909 188 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 NANOGQ9H9S0 305 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 ATP13A2Q9NQ11 1180 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 DNAJB9Q9UBS3 223 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 SLC22A7Q9Y694 548 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 NUP205Q92621 2012 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 A0A0D9SEW6 157 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 GLYATL1P3A0A0U1RQE8 302 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 A0A1W2PPW3 197 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 PLK4O00444 970 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 PSIP1O75475 530 aaKnown RBP10.14□□□□□ -0.79
LIG1-220ENST00000601091 LRATO95237 230 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 CLDN9O95484 217 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 GSNP06396 782 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 GNAO1P09471 354 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 HOXD8P13378 290 aaPredicted RBP10.14□□□□□ -0.79
LIG1-220ENST00000601091 PPM1AP35813 382 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 GATMP50440 423 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 POLR2LP62875 67 aaKnown RBP10.14□□□□□ -0.79
LIG1-220ENST00000601091 MAPK11Q15759 364 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 ZBTB2Q8N680 514 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 PTERQ96BW5 349 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 MED8Q96G25 268 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 FBXL20Q96IG2 436 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 MS4A4AQ96JQ5 239 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 EXOSC4Q9NPD3 245 aaKnown RBP10.14□□□□□ -0.79
LIG1-220ENST00000601091 TNFRSF10DQ9UBN6 386 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 PDE10AQ9Y233 779 aa10.14□□□□□ -0.79
LIG1-220ENST00000601091 LTBP1Q14766 1721 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 SOCS2O14508 198 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 TOR1AO14656 332 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 CYP2A6P11509 494 aaPredicted RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 SOAT1P35610 550 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 RPIAP49247 311 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 ST8SIA6P61647 398 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 LSM3P62310 102 aaKnown RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 ALKBH1Q13686 389 aaKnown RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 GRM2Q14416 872 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 SNX29P2Q8IUI4 249 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 SVOPLQ8N434 492 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 LIX1Q8N485 282 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 FAM110BQ8TC76 370 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 KCNJ9Q92806 393 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 C12orf43Q96C57 262 aaKnown RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 ADAD1Q96M93 576 aaKnown RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 NCOR1P1Q9H4R4 102 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 MAGEE1Q9HCI5 957 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 SDR39U1Q9NRG7 319 aaPredicted RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 UFSP2Q9NUQ7 469 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 TMEM161AQ9NX61 479 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 RGS17Q9UGC6 210 aaPredicted RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 NUP50Q9UKX7 468 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 SAMD4AQ9UPU9 718 aaKnown RBP10.13□□□□□ -0.79
LIG1-220ENST00000601091 FAM172BPA6NC97 362 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 CXCR6O00574 342 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 GMDSO60547 372 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 WDR47O94967 919 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 NTRK1P04629 796 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 FCER2P06734 321 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 C7P10643 843 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 G6PDP11413 515 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 CAPN3P20807 821 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 MAGP20916 626 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 GPX3P22352 226 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 OR3A3P47888 321 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 GSK3AP49840 483 aa10.13□□□□□ -0.79
LIG1-220ENST00000601091 DEFA1P59665 94 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms