RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 FCRL1Q96LA6 429 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 LRGUKQ96M69 825 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 MIR1-1HGQ9H1L0 117 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 TMED5Q9Y3A6 229 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 DGKBQ9Y6T7 804 aa21.82■■□□□ 1.08
CDX1-201ENST00000231656 A0A1W2PR77 199 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 STAMBPO95630 424 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 WNT1P04628 370 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 CAPNS1P04632 268 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 SLC7A1P30825 629 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 HNF4AP41235 474 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 CLCNKAP51800 687 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 LIPEQ05469 1076 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 CSTF3Q12996 717 aaKnown RBP21.81■■□□□ 1.08
CDX1-201ENST00000231656 FZD2Q14332 565 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 FAM174BQ3ZCQ3 159 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 RNF175Q8N4F7 328 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 OR9A1PQ8NGU1 263 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 DNASE2BQ8WZ79 361 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 TMEM74Q96NL1 305 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 TMEM168Q9H0V1 697 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 ALG2Q9H553 416 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 GPRC5BQ9NZH0 403 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 ACTR3BQ9P1U1 418 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 AP4S1Q9Y587 144 aa21.81■■□□□ 1.08
CDX1-201ENST00000231656 H0YIV9 168 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 CLGNO14967 610 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 SLC35G4P0C7Q5 338 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 CLDN8P56748 225 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 CTBSQ01459 385 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 EIF2B5Q13144 721 aaKnown RBP21.8■■□□□ 1.08
CDX1-201ENST00000231656 SPANXN4Q5MJ08 99 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 IRAK1BP1Q5VVH5 260 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 PTRH1Q86Y79 214 aaKnown RBP21.8■■□□□ 1.08
CDX1-201ENST00000231656 TMEM102Q8N9M5 508 aaPredicted RBP21.8■■□□□ 1.08
CDX1-201ENST00000231656 DTWD2Q8NBA8 298 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 CLHC1Q8NHS4 586 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 TRIM15Q9C019 465 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 MUC13Q9H3R2 512 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 TM9SF3Q9HD45 589 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 EGFL7Q9UHF1 273 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 WDR37Q9Y2I8 494 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 FANCMQ8IYD8 2048 aa21.8■■□□□ 1.08
CDX1-201ENST00000231656 TDRD6O60522 2096 aaKnown RBP21.8■■□□□ 1.08
CDX1-201ENST00000231656 AQP12BA6NM10 295 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 RASGRP1O95267 797 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 IL6P05231 212 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 AMD1P17707 334 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 SDC1P18827 310 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 IDSP22304 550 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 TBPL1P62380 186 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 CAPRIN2Q6IMN6 1127 aaKnown RBP21.79■■□□□ 1.08
CDX1-201ENST00000231656 UNC5DQ6UXZ4 953 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 ARMCX6Q7L4S7 300 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 IQCHQ86VS3 1027 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 DCP2Q8IU60 420 aaKnown RBP21.79■■□□□ 1.08
CDX1-201ENST00000231656 AQP12AQ8IXF9 295 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 LRRC56Q8IYG6 542 aaPredicted RBP21.79■■□□□ 1.08
CDX1-201ENST00000231656 TFGQ92734 400 aaPredicted RBP21.79■■□□□ 1.08
CDX1-201ENST00000231656 GTF2H4Q92759 462 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 CGREF1Q99674 301 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 SGPP1Q9BX95 441 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 TRNAU1APQ9NX07 287 aaKnown RBP21.79■■□□□ 1.08
CDX1-201ENST00000231656 ARPC2O15144 300 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 PGRP06401 933 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 MAPK1P28482 360 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 GRIA3P42263 894 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 FXNQ16595 210 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 CAPN13Q6MZZ7 669 aaPredicted RBP21.79■■□□□ 1.08
CDX1-201ENST00000231656 SLCO4C1Q6ZQN7 724 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 LPCAT2Q7L5N7 544 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 TICAM1Q8IUC6 712 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 FAM9CQ8IZT9 166 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 PPM1MQ96MI6 270 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 KCTD14Q9BQ13 255 aaPredicted RBP21.79■■□□□ 1.08
CDX1-201ENST00000231656 CAAP1Q9H8G2 361 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 KLF15Q9UIH9 416 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 ASF1AQ9Y294 204 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 CFAP20Q9Y6A4 193 aaKnown RBP21.79■■□□□ 1.08
CDX1-201ENST00000231656 ARHGEF17Q96PE2 2063 aaPredicted RBP21.79■■□□□ 1.08
CDX1-201ENST00000231656 CROCCQ5TZA2 2017 aa21.79■■□□□ 1.08
CDX1-201ENST00000231656 WDFY4Q6ZS81 3184 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 LAMA1P25391 3075 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 ZNF839A8K0R7 811 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 TNFP01375 233 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 PCSK2P16519 638 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 TACR1P25103 407 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 AK4P27144 223 aaPredicted RBP21.78■■□□□ 1.08
CDX1-201ENST00000231656 AQP4P55087 323 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 SRSF5Q13243 272 aaKnown RBP21.78■■□□□ 1.08
CDX1-201ENST00000231656 TCEA2Q15560 299 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 GRAMD1BQ3KR37 738 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 ZNF542PQ5EBM4 170 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 WDR45BQ5MNZ6 344 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 PARGQ86W56 976 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 SYTL1Q8IYJ3 562 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 GOLM1Q8NBJ4 401 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 PHC3Q8NDX5 983 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 CCL4L1Q8NHW4 92 aa21.78■■□□□ 1.08
CDX1-201ENST00000231656 NEIL2Q969S2 332 aa21.78■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms