RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 PRDM8Q9NQV8 689 aa8.94□□□□□ -0.98
LIMCH1-202ENST00000381753 DNAJC25-GNG10A0A024R161 153 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 A0A0J9YY10 115 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 ANKRD34BA5PLL1 514 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 TRIM3O75382 744 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 TSPAN12O95859 305 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 TSPAN8P19075 237 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 ENDOUP21128 410 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 DPP4P27487 766 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 EIF1AXP47813 144 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 RUNX2Q13950 521 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 C9orf152Q5JTZ5 239 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 EXOC3L1Q86VI1 746 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 IZUMO1Q8IYV9 350 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 CRYBG2Q8N1P7 616 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 SPATA6LQ8N4H0 392 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 IL17RCQ8NAC3 791 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 SCAMP4Q969E2 229 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 RHBDF1Q96CC6 855 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 C19orf60Q96EN9 201 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 TSSK3Q96PN8 268 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 LRRN3Q9H3W5 708 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 CENPMQ9NSP4 180 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 CPNE7Q9UBL6 633 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 IDSB3KWA1 339 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 UBFD1O14562 309 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 FECHP22830 423 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 ITGB7P26010 798 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 GSTM5P46439 218 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 MAPK7Q13164 816 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 TAF5Q15542 800 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 CDCA2Q69YH5 1023 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 GALNT6Q8NCL4 622 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 ANKK1Q8NFD2 765 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 ANKRD7Q92527 254 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 KCNF1Q9H3M0 494 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 MTMR10Q9NXD2 777 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 PPP1R14DQ9NXH3 145 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 UTS2RQ9UKP6 389 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 AP3M1Q9Y2T2 418 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 ENTPD2Q9Y5L3 495 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 PMF1-BGLAPU3KQ54 211 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 A0A0D9SEW6 157 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 SOX1O00570 391 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 HCN1O60741 890 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 SEC24AO95486 1093 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 DBIP07108 87 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 IL12RB1P42701 662 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 OR1D5P58170 312 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 RNASEH2BQ5TBB1 312 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 TMEM211Q6ICI0 200 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 OPN5Q6U736 354 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 PHF10Q8WUB8 498 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 CATSPER2Q96P56 530 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 NOP53Q9NZM5 478 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 EMC3Q9P0I2 261 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 SH3GLB1Q9Y371 365 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 POLR3HQ9Y535 204 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 RBM47A0AV96 593 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 DPPA5A6NC42 116 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 PSMD9O00233 223 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 AGR2O95994 175 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 EDNRBP24530 442 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 CLCN2P51788 898 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 KEAP1Q14145 624 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 PCBP2Q15366 365 aaKnown RBP eCLIP8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 SGCAQ16586 387 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 SUSD1Q6UWL2 747 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 GPR155Q7Z3F1 870 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 FUKQ8N0W3 1084 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 FAM47BQ8NA70 645 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 RCBTB1Q8NDN9 531 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 PJA1Q8NG27 643 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 TMEM40Q8WWA1 233 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 ERP44Q9BS26 406 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 TRIM2Q9C040 744 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 GRIP2Q9C0E4 1043 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 SLC6A17Q9H1V8 727 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 RETREG1Q9H6L5 497 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 TAS2R9Q9NYW1 312 aa8.93□□□□□ -0.98
LIMCH1-202ENST00000381753 PRR33A8MZF0 331 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 TAF4O00268 1085 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 RAD51CO43502 376 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 CNOT3O75175 753 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 RSL1D1O76021 490 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 AP2A2O94973 939 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 C8orf89P0DMQ9 161 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 ZNF20P17024 532 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 AK4P27144 223 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 ST13P50502 369 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 LGALS4P56470 323 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 DEFA1P59665 94 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 DEFA3P59666 94 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 ABATP80404 500 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 DEFB134Q4QY38 66 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 NXPE1Q8N323 547 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 ARFGAP1Q8N6T3 406 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 EXD3Q8N9H8 876 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 OR2L5Q8NG80 312 aa8.92□□□□□ -0.98
LIMCH1-202ENST00000381753 ZNF142P52746 1687 aaPredicted RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms