RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 SLC6A19Q695T7 634 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 SUSD1Q6UWL2 747 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 CYHR1Q6ZMK1 362 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 KCNMB4Q86W47 210 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 OR4N4Q8N0Y3 316 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 AGGF1Q8N302 714 aaeCLIP18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 GIMAP7Q8NHV1 300 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 ZNF480Q8WV37 535 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 COL26A1Q96A83 441 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 GPR21Q99679 349 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 SLC30A3Q99726 388 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 AARSD1Q9BTE6 412 aaKnown RBP18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 ZNF552Q9H707 407 aaPredicted RBP18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 SLC6A20Q9NP91 592 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 ZNF282Q9UDV7 671 aaPredicted RBP18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 ASIC3Q9UHC3 531 aa18.21■□□□□ 0.51
CCDC28A-203ENST00000617445 SPTAN1Q13813 2472 aaKnown RBP18.21■□□□□ 0.5
CCDC28A-203ENST00000617445 MAST4O15021 2626 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 E7ENX8 843 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 H0YGG7 62 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 DNALI1O14645 258 aaPredicted RBP18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 HAUS5O94927 633 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 EIF2S1P05198 315 aaKnown RBP18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 EZRP15311 586 aaKnown RBP18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 HRH2P25021 359 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 OR1D4P47884 311 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 ARF3P61204 181 aaPredicted RBP18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 TAP2Q03519 686 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 CRYMQ14894 314 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 INPP5JQ15735 1006 aaPredicted RBP18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 PRAMEF13Q5VWM6 474 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 ZNF425Q6IV72 752 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 KIAA0408Q6ZU52 694 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 SYDE1Q6ZW31 735 aaPredicted RBP18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 PAQR7Q86WK9 346 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 ZADH2Q8N4Q0 377 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 C2CD4AQ8NCU7 369 aaPredicted RBP18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 CD200R1Q8TD46 325 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 RERGQ96A58 199 aaPredicted RBP18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 RUNDC3BQ96NL0 473 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 TAC3Q9UHF0 121 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 FBXL4Q9UKA2 621 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 B3GNT3Q9Y2A9 372 aa18.2■□□□□ 0.5
CCDC28A-203ENST00000617445 SMAPO00193 183 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 SOCS6O14544 535 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 SYF2O95926 243 aaKnown RBP18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 RGS4P49798 205 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 CUL1Q13616 776 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 TSTA3Q13630 321 aaPredicted RBP18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 RAPSNQ13702 412 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 RBBP7Q16576 425 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 SPANXN3Q5MJ09 141 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 IRAK1BP1Q5VVH5 260 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 KIRREL2Q6UWL6 708 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 GALNT7Q86SF2 657 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 Q8NA96 180 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 MCOLN3Q8TDD5 553 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 MIEF2Q96C03 454 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 CABS1Q96KC9 395 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 MFRPQ9BY79 579 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 SLC29A3Q9BZD2 475 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 PCBD2Q9H0N5 130 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 DDX47Q9H0S4 455 aaKnown RBP18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 IARS2Q9NSE4 1012 aaKnown RBP18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 TAS2R13Q9NYV9 303 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 CTSFQ9UBX1 484 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 TRMT6Q9UJA5 497 aaKnown RBP18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 HS3ST3B1Q9Y662 390 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 MAU2Q9Y6X3 613 aa18.19■□□□□ 0.5
CCDC28A-203ENST00000617445 IGLV3-12A0A075B6K2 115 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 IGKV1-8A0A0C4DH67 115 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 PCDH17O14917 1159 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 C8GP07360 202 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 ZGLP1P0C6A0 271 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 ITGA3P26006 1051 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 FOXL2P58012 376 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 YBX1P67809 324 aaKnown RBP18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 MPP1Q00013 466 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 TUBB8Q3ZCM7 444 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 UBE2R2Q712K3 238 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 CNTN4Q8IWV2 1026 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 PALM2Q8IXS6 379 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 LRRC56Q8IYG6 542 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 IQCKQ8N0W5 287 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 CSNK1A1LQ8N752 337 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 STT3BQ8TCJ2 826 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 C10orf90Q96M02 699 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 OR2A5Q96R48 311 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 CRB3Q9BUF7 120 aa18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 SOX17Q9H6I2 414 aaPredicted RBP18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 TRMT1Q9NXH9 659 aaKnown RBP18.18■□□□□ 0.5
CCDC28A-203ENST00000617445 SLC16A5O15375 505 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 NRP2O60462 931 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 FBLP22087 321 aaKnown RBP18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 DHX9Q08211 1270 aaKnown RBP18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 SP140Q13342 867 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 DSG2Q14126 1118 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 MORF4L2Q15014 288 aa18.17■□□□□ 0.5
CCDC28A-203ENST00000617445 PLEKHN1Q494U1 663 aaPredicted RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms