RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 ZCCHC7Q8N3Z6 543 aaKnown RBP10.17□□□□□ -0.78
LIG1-220ENST00000601091 SVOPQ8N4V2 548 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 RBM4BQ9BQ04 359 aaKnown RBP10.17□□□□□ -0.78
LIG1-220ENST00000601091 RBM4Q9BWF3 364 aaKnown RBP10.17□□□□□ -0.78
LIG1-220ENST00000601091 TOR3AQ9H497 397 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 HMG20AQ9NP66 347 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 TREX1Q9NSU2 369 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 ELOVL7A1L3X0 281 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 ZNF195O14628 629 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 PRAMEF11O60813 436 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 ZNF865P0CJ78 1059 aaPredicted RBP10.17□□□□□ -0.78
LIG1-220ENST00000601091 GPC1P35052 558 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 SH3BP2P78314 561 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 SMAD3P84022 425 aaKnown RBP10.17□□□□□ -0.78
LIG1-220ENST00000601091 NRG1Q02297 640 aaPredicted RBP10.17□□□□□ -0.78
LIG1-220ENST00000601091 GTF2H2Q13888 395 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 PIK3R6Q5UE93 754 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 LYPLAL1Q5VWZ2 237 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 SLC6A19Q695T7 634 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 GTF2H2CQ6P1K8 395 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 ATG14Q6ZNE5 492 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 GPR180Q86V85 440 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 CIPCQ9C0C6 399 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 ACTR6Q9GZN1 396 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 ZFYVE1Q9HBF4 777 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 LRTM1Q9HBL6 345 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 GMPR2Q9P2T1 348 aaKnown RBP10.17□□□□□ -0.78
LIG1-220ENST00000601091 RIMS3Q9UJD0 308 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 ZNF490Q9ULM2 529 aaPredicted RBP10.17□□□□□ -0.78
LIG1-220ENST00000601091 HCN4Q9Y3Q4 1203 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 KIAA1217Q5T5P2 1943 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 SIPA1L1O43166 1804 aa10.17□□□□□ -0.78
LIG1-220ENST00000601091 PI15O43692 258 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 DNAJB6O75190 326 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 PROS1P07225 676 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 RAP2AP10114 183 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 GJA1P17302 382 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 ARCN1P48444 511 aaKnown RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 MTPNP58546 118 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 UFM1P61960 85 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 CADM2Q8N3J6 435 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 MINDY1Q8N5J2 469 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 NSUN5Q96P11 429 aaKnown RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 SYT17Q9BSW7 474 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 CUEDC1Q9NWM3 386 aaPredicted RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 SNX7Q9UNH6 387 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 GOLGA4Q13439 2230 aaKnown RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 COL11A2P13942 1736 aaPredicted RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 NRXN2Q9P2S2 1712 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 PRSS51A0A1B0GVH4 220 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 GNG14A0A1W2PPG7 69 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 MOXD2PA6NHM9 499 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 H3BNH8 94 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 APOC1P02654 83 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 CYP11A1P05108 521 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 HOXB6P17509 224 aaKnown RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 CXCR2P25025 360 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 SERPINB1P30740 379 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 SZRD1Q7Z422 152 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 SYT12Q8IV01 421 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 SLC37A3Q8NCC5 494 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 OR7A2PQ8NGA2 310 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 OR9Q1Q8NGQ5 310 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 OR10A6Q8NH74 314 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 PIK3R3Q92569 461 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 L3HYPDHQ96EM0 354 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 ZNF486Q96H40 463 aaPredicted RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 LURAP1Q96LR2 239 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 CDK15Q96Q40 435 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 C1QTNF1Q9BXJ1 281 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 YTHDF1Q9BYJ9 559 aaKnown RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 TRMT13Q9NUP7 481 aaKnown RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 U3KQV3 271 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 FAM20BO75063 409 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 ITGBL1O95965 494 aaPredicted RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 ANXA8P13928 327 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 KCNQ1P51787 676 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 IRF8Q02556 426 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 ACSM2AQ08AH3 577 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 STARD3Q14849 445 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 ANXA8L1Q5VT79 327 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 ACSM2BQ68CK6 577 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 LILRA2Q8N149 483 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 ZNF619Q8N2I2 560 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 OR6K2Q8NGY2 324 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 TMEM74Q96NL1 305 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 GSTO2Q9H4Y5 243 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 DIABLOQ9NR28 239 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 SH3BP4Q9P0V3 963 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 EBF1Q9UH73 591 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 CDC14AQ9UNH5 594 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 WBP11Q9Y2W2 641 aaKnown RBP10.16□□□□□ -0.78
LIG1-220ENST00000601091 LRRC14BA6NHZ5 514 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 RFXANKO14593 260 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 STX16O14662 325 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 STK16O75716 305 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 ADH1CP00326 375 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 ITIH1P19827 911 aa10.16□□□□□ -0.78
LIG1-220ENST00000601091 TRIM32Q13049 653 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms