RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 KLF10Q13118 480 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 NR6A1Q15406 480 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 ATP6AP1LQ52LC2 224 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 ICE2Q659A1 982 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 GKN2Q86XP6 184 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 FAM129CQ86XR2 697 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 OR7G3Q8NG95 312 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 SNX11Q9Y5W9 270 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 PIPSLA2A3N6 862 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 ANKRD65E5RJM6 399 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 SLC28A1O00337 649 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 BTN3A3O00478 584 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 RGS14O43566 566 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 UNC5CO95185 931 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 SLC2A4P14672 509 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 GNSP15586 552 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 AVPR2P30518 371 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 ADGRF3Q8IZF5 1079 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 ZNF740Q8NDX6 193 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 ZFPM2Q8WW38 1151 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 ZC3H10Q96K80 434 aaKnown RBP17.93■□□□□ 0.46
CLN3-206ENST00000360019 TWSG1Q9GZX9 223 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 SRMSQ9H3Y6 488 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 ERVMER34-1Q9H9K5 563 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 UCKL1Q9NWZ5 548 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 PCDHB11Q9Y5F2 797 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 PCDHGA11Q9Y5H2 935 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 CAPN7Q9Y6W3 813 aa17.93■□□□□ 0.46
CLN3-206ENST00000360019 WDR87Q6ZQQ6 2873 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 IGKV1-8A0A0C4DH67 115 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 SERTM1A2A2V5 107 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 PIAS2O75928 621 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 CHRM5P08912 532 aaPredicted RBP17.92■□□□□ 0.46
CLN3-206ENST00000360019 DIO3P55073 304 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 PRDX1Q06830 199 aaKnown RBP17.92■□□□□ 0.46
CLN3-206ENST00000360019 PLCL1Q15111 1095 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 PAGE2BQ5JRK9 111 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 MED27Q6P2C8 311 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 FAM20CQ8IXL6 584 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 ABHD11Q8NFV4 315 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 PELI2Q9HAT8 420 aa17.92■□□□□ 0.46
CLN3-206ENST00000360019 LMO7DNF2Z398 122 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 SP9P0CG40 484 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 PIK3R1P27986 724 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 SCTRP47872 440 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 MAZP56270 477 aaKnown RBP17.91■□□□□ 0.46
CLN3-206ENST00000360019 ERVK-8P63133 956 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 HHEXQ03014 270 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 ZNF33BQ06732 778 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 SQLEQ14534 574 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 NAA25Q14CX7 972 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 IMPG1Q17R60 797 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 AP5B1Q2VPB7 878 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 ZNF528Q3MIS6 628 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 RFTN2Q52LD8 501 aaPredicted RBP17.91■□□□□ 0.46
CLN3-206ENST00000360019 SLC9B2Q86UD5 537 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 LAS2Q8IYD9 372 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 FNDC5Q8NAU1 212 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 PIGKQ92643 395 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 NSL1Q96IY1 281 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 MTERF1Q99551 399 aaKnown RBP17.91■□□□□ 0.46
CLN3-206ENST00000360019 C1orf50Q9BV19 199 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 ZSCAN32Q9NX65 697 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 SUSD2Q9UGT4 822 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 DOLKQ9UPQ8 538 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 PI4KAP42356 2102 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 H7BY64 318 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 SLC22A2O15244 555 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 CNR2P34972 360 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 NCALDP61601 193 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 LAPTM5Q13571 262 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 DDX39BQ13838 428 aaKnown RBP17.91■□□□□ 0.46
CLN3-206ENST00000360019 DEFB133Q30KQ1 61 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 PEAR1Q5VY43 1037 aaPredicted RBP17.91■□□□□ 0.46
CLN3-206ENST00000360019 CEP68Q76N32 757 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 SPATA19Q7Z5L4 167 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 ZBTB44Q8NCP5 570 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 OR2L3Q8NG85 312 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 OR4K1Q8NGD4 311 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 HUS1BQ8NHY5 278 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 PPP3R2Q96LZ3 170 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 PRAP1Q96NZ9 151 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 TXLNGQ9NUQ3 528 aa17.91■□□□□ 0.46
CLN3-206ENST00000360019 SPEGQ15772 3267 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 CABIN1Q9Y6J0 2220 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 NOBOXO60393 691 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 SNRNP200O75643 2136 aaKnown RBP17.9■□□□□ 0.46
CLN3-206ENST00000360019 RSL1D1O76021 490 aaKnown RBP17.9■□□□□ 0.46
CLN3-206ENST00000360019 PCNAP12004 261 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 ADSLP30566 484 aaPredicted RBP17.9■□□□□ 0.46
CLN3-206ENST00000360019 ATP4BP51164 291 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 CCR8P51685 355 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 RPL38P63173 70 aaKnown RBP17.9■□□□□ 0.46
CLN3-206ENST00000360019 ANGPT1Q15389 498 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 SHBQ15464 509 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 ZNF423Q2M1K9 1284 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 ZNF761Q86XN6 746 aaPredicted RBP17.9■□□□□ 0.46
CLN3-206ENST00000360019 SYT12Q8IV01 421 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 SDR16C5Q8N3Y7 309 aa17.9■□□□□ 0.46
CLN3-206ENST00000360019 POU5F2Q8N7G0 328 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms